Next clip: An analysis and read preparation tool for nextera long mate pair libraries

Bioinformatics

Volumn 30, Issue 4, 2014, Pages 566-568

  Leggett, Richard M ^a   Clavijo, Bernardo J ^a   Clissold, Leah ^a   Clark, Matthew D ^a   Caccamo, Mario ^a  

^a EARLHAM INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN;

ARABIDOPSIS; ARTICLE; BIOLOGY; COMPUTER PROGRAM; DNA SEQUENCE; GENE LIBRARY; GENETICS; HIGH THROUGHPUT SEQUENCING; METHODOLOGY;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; COMPUTATIONAL BIOLOGY; GENOMIC LIBRARY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 84892405230     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt702     Document Type: Article

References (6)

1. Illumina. (2012) Data Processing of Nextera-Mate Pair Reads on Illumina Sequencing Platforms. Technical note. 5http://www.illumina.com/products/nextera- mate-pair-sample-prep-kit.ilmn4(21 August 2013, date last accessed).
2. Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics, 25, 1754-1760.
3. Marine,R. et al. (2011) Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA. Appl. Environ. Microbiol., 77, 8071-8079.
4. Park,N. et al. (2013) An improved approach to mate-paired library preparation for Illumina sequencing. Methods Next Gener. Seq., 1, 10-20.
5. Simpson,J.T. et al. (2009) ABySS: a parallel assembler for short read sequence data. Genome Res., 19, 1117-1123.
6. Quail,M.A. et al. (2012) A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics, 13, 341.