Rapid metagenomic next-generation sequencing during an investigation of hospital-acquired human parainfluenza virus 3 infections

Journal of Clinical Microbiology

Volumn 55, Issue 1, 2017, Pages 177-182

  Greninger, Alexander L ^a   Zerr, Danielle M ^b   Qin, Xuan ^a   Adler, Amanda L ^b   Sampoleo, Reigran ^a   Kuypers, Jane M ^a   Englund, Janet A ^b   Jerome, Keith R ^a,c  

^a UNIVERSITY OF WASHINGTON   (United States)

^b UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^c USA   (United States)

Author keywords

Hospital acquired infections; HPIV3; Human parainfluenza 3 virus; Infection prevention; Metagenomics; mNGS; Next generation sequencing; Parainfluenza; Rapid sequencing; Viral sequencing

Indexed keywords

ARTICLE; CASE REPORT; CHILD; CONTROLLED STUDY; DISEASE TRANSMISSION; GENE CLUSTER; GENOME-WIDE ASSOCIATION STUDY; HOSPITAL INFECTION; HUMAN; HUMAN PARAINFLUENZA VIRUS 3; INFANT; INFECTION PREVENTION; MALE; METAGENOMICS; NEXT GENERATION SEQUENCING; NONHUMAN; NUCLEOTIDE SEQUENCE; PARAINFLUENZA VIRUS INFECTION; PHYLOGENY; PRESCHOOL CHILD; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY ANALYSIS; STRAIN DIFFERENCE; VIRUS DETECTION; VIRUS GENOME; VIRUS STRAIN; ADOLESCENT; CLASSIFICATION; CLUSTER ANALYSIS; CROSS INFECTION; EPIDEMIC; FEMALE; GENETICS; HIGH THROUGHPUT SEQUENCING; HOSPITAL; ISOLATION AND PURIFICATION; MOLECULAR EPIDEMIOLOGY; NEWBORN; RESPIROVIRUS INFECTIONS; SEQUENCE HOMOLOGY; TIME FACTOR; VIROLOGY; YOUNG ADULT;

ADOLESCENT; CHILD; CHILD, PRESCHOOL; CLUSTER ANALYSIS; CROSS INFECTION; DISEASE OUTBREAKS; FEMALE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HOSPITALS, PEDIATRIC; HUMANS; INFANT; INFANT, NEWBORN; MALE; METAGENOMICS; MOLECULAR EPIDEMIOLOGY; PARAINFLUENZA VIRUS 3, HUMAN; PHYLOGENY; RESPIROVIRUS INFECTIONS; SEQUENCE HOMOLOGY; TIME FACTORS; YOUNG ADULT;

EID: 85008413051     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01881-16     Document Type: Article

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