The complete plastid genome sequence of Abies koreana (Pinaceae: Abietoideae)

Mitochondrial DNA

Volumn 27, Issue 4, 2016, Pages 2351-2353

  Yi, Dong Keun ^a   Yang, Jong Cheol ^a   So, Soonku ^a   Joo, Minjung ^a   Kim, Dong Kap ^a   Shin, Chang Ho ^a   Lee, You Mi ^a   Choi, Kyung ^a  

^a Korea National Arboretum   (South Korea)

Author keywords

Abies koreana; Pinaceae; Plastid genome

Indexed keywords

CHLOROPLAST DNA; DOUBLE STRANDED DNA; PLANT DNA; PLANT PROTEIN; PLANT RNA; RIBOSOME RNA; SPACER DNA; TRANSFER RNA;

ABIES; ABIES KOREANA; ARTICLE; BASE PAIRING; CHLOROPLAST GENOME; GENE LOSS; GENE SEQUENCE; INTRON; INVERTED REPEAT; NDH GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENETIC TREE; PINACEAE; PLANT GENE; PLANT GENOME; PRIORITY JOURNAL; PSEUDOGENE; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; NUCLEOTIDE REPEAT; PLASTID GENOME; WHOLE GENOME SEQUENCING;

ABIES; BASE COMPOSITION; GENES, PLANT; GENOME, PLASTID; OPEN READING FRAMES; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; WHOLE GENOME SEQUENCING;

EID: 85008397813     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/19401736.2015.1025260     Document Type: Article

References (16)

1. Cronn R, Liston A, Parks M, Gernandt DS, Shen R, Mockler T. (2008). Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res 36: e122.
2. Farjon A. (2010). A handbook of the world’s conifers. Vols 1-2. Leiden: EJ Brill.
3. Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, et al. (2012). Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28: 1647-9.
4. Lin CP, Huang JP, Wu CS, Hsu CY, Chaw SM. (2010). Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies. Genome Biol Evol 2: 504-17.
5. Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, et al. (2013). The Norway spruce genome sequence and conifer genome evolution. Nature 497: 579-84.
6. Raubeson LA, Jansen RK. (1992). A rare chloroplast DNA structure mutation mutation is shared by all conifers. BiochemSyst Ecol 20: 17-24.
7. Semerikova SA, Semerikov VL. (2014). Molecular phylogenetic analysis of the genus Abies (Pinaceae) based on the nucleotide sequence of chloroplast DNA. Russ J Genet 50: 7-19.
8. Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, et al. (1986). The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression. EMBO J 5: 2043-9.
9. Suyama Y, Yoshimaru H, Tsumura Y. (2000). Molecular phylogenetic position of Japanese Abies (Pinaceae) based on chloroplast DNA sequences. Mol Phylogenet Evol 16: 271-7.
10. Tsumura Y, Suyama Y, Yoshimura K. (2000). Chloroplast DNA inversion polymorphism in populations of Abies and Tsuga. Mol Biol Evol 17: 1302-12.
11. Wakasugi T, Tsudzuki J, Ito S, Nakashima K, Tsudzuki T, Sugiura M. (1994). Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Proc Natl Acad Sci USA 91: 9794-8.
12. Wang XQ, Tank DC, Sang T. (2000). Phylogeny and divergence times in Pinaceae: Evidence from three genomes. Mol Biol Evol 17: 773-81.
13. Wu CS, Lai YT, Lin CP, Wang YN, Chaw SM. (2009). Evolution of reduced and compact chloroplast genomes (cpDNAs). in gnetophytes: Selection toward a lower-cost strategy. Mol Phylogenet Evol 52: 115-24.
14. Wu CS, Wang YN, Hsu CY, Lin CP, Chaw SM. (2011). Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny. Genome Biol Evol 3: 1284-95.
15. Xiang QP, Wei R, Shao YZ, Yang ZY, Wang XQ, Zhang XC. (2015). Phylogenetic relationships, possible ancient hybridization, and biogeographic history of Abies (Pinaceae) based on data from nuclear, plastid, and mitochondrial genomes. Mol Phylogenet Evol 82: 1-14.
16. Yi DK, Kim KJ. (2012). Complete chloroplast genome sequences of important oilseed crop Sesamum indicum L. PLoS One 7: e35872.