-
1
-
-
84976875290
-
WormBase 2016: expanding to enable helminth genomic research
-
Howe, K.L., Bolt, B.J., Cain, S., Chan, J., Chen, W.J., Davis, P., Done, J., Down, T., Gao, S., Grove, C., Harris, T.W., Kishore, R., Lee, R., Lomax, J., Li, Y., Muller, H.M., Nakamura, C., Nuin, P., Paulini, M., Raciti, D., Schindelman, G., Stanley, E., Tuli, M.A., Van Auken, K., Wang, D., Wang, X., Williams, G., Wright, A., Yook, K., Berriman, M., Kersey, P., Schedl, T., Stein, L., Sternberg, P.W., WormBase 2016: expanding to enable helminth genomic research. Nucleic Acids Res. 44:D1 (2016), D774–D780.
-
(2016)
Nucleic Acids Res.
, vol.44
, Issue.D1
, pp. D774-D780
-
-
Howe, K.L.1
Bolt, B.J.2
Cain, S.3
Chan, J.4
Chen, W.J.5
Davis, P.6
Done, J.7
Down, T.8
Gao, S.9
Grove, C.10
Harris, T.W.11
Kishore, R.12
Lee, R.13
Lomax, J.14
Li, Y.15
Muller, H.M.16
Nakamura, C.17
Nuin, P.18
Paulini, M.19
Raciti, D.20
Schindelman, G.21
Stanley, E.22
Tuli, M.A.23
Van Auken, K.24
Wang, D.25
Wang, X.26
Williams, G.27
Wright, A.28
Yook, K.29
Berriman, M.30
Kersey, P.31
Schedl, T.32
Stein, L.33
Sternberg, P.W.34
more..
-
2
-
-
4243088097
-
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics
-
Stein, L.D., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M.R., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A., Coulson, A., D'Eustachio, P., Fitch, D.H., Fulton, L.A., Fulton, R.E., Griffiths-Jones, S., Harris, T.W., Hillier, L.W., Kamath, R., Kuwabara, P.E., Mardis, E.R., Marra, M.A., Miner, T.L., Minx, P., Mullikin, J.C., Plumb, R.W., Rogers, J., Schein, J.E., Sohrmann, M., Spieth, J., Stajich, J.E., Wei, C., Willey, D., Wilson, R.K., Durbin, R., Waterston, R.H., The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol., 1(2), 2003, E45.
-
(2003)
PLoS Biol.
, vol.1
, Issue.2
, pp. E45
-
-
Stein, L.D.1
Bao, Z.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
Chen, N.6
Chinwalla, A.7
Clarke, L.8
Clee, C.9
Coghlan, A.10
Coulson, A.11
D'Eustachio, P.12
Fitch, D.H.13
Fulton, L.A.14
Fulton, R.E.15
Griffiths-Jones, S.16
Harris, T.W.17
Hillier, L.W.18
Kamath, R.19
Kuwabara, P.E.20
Mardis, E.R.21
Marra, M.A.22
Miner, T.L.23
Minx, P.24
Mullikin, J.C.25
Plumb, R.W.26
Rogers, J.27
Schein, J.E.28
Sohrmann, M.29
Spieth, J.30
Stajich, J.E.31
Wei, C.32
Willey, D.33
Wilson, R.K.34
Durbin, R.35
Waterston, R.H.36
more..
-
3
-
-
34648836102
-
Draft genome of the filarial nematode parasite Brugia malayi
-
Ghedin, E., Wang, S., Spiro, D., Caler, E., Zhao, Q., Crabtree, J., Allen, J.E., Delcher, A.L., Guiliano, D.B., Miranda-Saavedra, D., Angiuoli, S.V., Creasy, T., Amedeo, P., Haas, B., El-Sayed, N.M., Wortman, J.R., Feldblyum, T., Tallon, L., Schatz, M., Shumway, M., Koo, H., Salzberg, S.L., Schobel, S., Pertea, M., Pop, M., White, O., Barton, G.J., Carlow, C.K., Crawford, M.J., Daub, J., Dimmic, M.W., Estes, C.F., Foster, J.M., Ganatra, M., Gregory, W.F., Johnson, N.M., Jin, J., Komuniecki, R., Korf, I., Kumar, S., Laney, S., Li, B.W., Li, W., Lindblom, T.H., Lustigman, S., Ma, D., Maina, C.V., Martin, D.M., McCarter, J.P., McReynolds, L., Mitreva, M., Nutman, T.B., Parkinson, J., Peregrin-Alvarez, J.M., Poole, C., Ren, Q., Saunders, L., Sluder, A.E., Smith, K., Stanke, M., Unnasch, T.R., Ware, J., Wei, A.D., Weil, G., Williams, D.J., Zhang, Y., Williams, S.A., Fraser-Liggett, C., Slatko, B., Blaxter, M.L., Scott, A.L., Draft genome of the filarial nematode parasite Brugia malayi. Science 317:5845 (2007), 1756–1760.
-
(2007)
Science
, vol.317
, Issue.5845
, pp. 1756-1760
-
-
Ghedin, E.1
Wang, S.2
Spiro, D.3
Caler, E.4
Zhao, Q.5
Crabtree, J.6
Allen, J.E.7
Delcher, A.L.8
Guiliano, D.B.9
Miranda-Saavedra, D.10
Angiuoli, S.V.11
Creasy, T.12
Amedeo, P.13
Haas, B.14
El-Sayed, N.M.15
Wortman, J.R.16
Feldblyum, T.17
Tallon, L.18
Schatz, M.19
Shumway, M.20
Koo, H.21
Salzberg, S.L.22
Schobel, S.23
Pertea, M.24
Pop, M.25
White, O.26
Barton, G.J.27
Carlow, C.K.28
Crawford, M.J.29
Daub, J.30
Dimmic, M.W.31
Estes, C.F.32
Foster, J.M.33
Ganatra, M.34
Gregory, W.F.35
Johnson, N.M.36
Jin, J.37
Komuniecki, R.38
Korf, I.39
Kumar, S.40
Laney, S.41
Li, B.W.42
Li, W.43
Lindblom, T.H.44
Lustigman, S.45
Ma, D.46
Maina, C.V.47
Martin, D.M.48
McCarter, J.P.49
McReynolds, L.50
Mitreva, M.51
Nutman, T.B.52
Parkinson, J.53
Peregrin-Alvarez, J.M.54
Poole, C.55
Ren, Q.56
Saunders, L.57
Sluder, A.E.58
Smith, K.59
Stanke, M.60
Unnasch, T.R.61
Ware, J.62
Wei, A.D.63
Weil, G.64
Williams, D.J.65
Zhang, Y.66
Williams, S.A.67
Fraser-Liggett, C.68
Slatko, B.69
Blaxter, M.L.70
Scott, A.L.71
more..
-
4
-
-
49449094873
-
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
-
Abad, P., Gouzy, J., Aury, J.M., Castagnone-Sereno, P., Danchin, E.G., Deleury, E., Perfus-Barbeoch, L., Anthouard, V., Artiguenave, F., Blok, V.C., Caillaud, M.C., Coutinho, P.M., Dasilva, C., De Luca, F., Deau, F., Esquibet, M., Flutre, T., Goldstone, J.V., Hamamouch, N., Hewezi, T., Jaillon, O., Jubin, C., Leonetti, P., Magliano, M., Maier, T.R., Markov, G.V., McVeigh, P., Pesole, G., Poulain, J., Robinson-Rechavi, M., Sallet, E., Segurens, B., Steinbach, D., Tytgat, T., Ugarte, E., van Ghelder, C., Veronico, P., Baum, T.J., Blaxter, M., Bleve-Zacheo, T., Davis, E.L., Ewbank, J.J., Favery, B., Grenier, E., Henrissat, B., Jones, J.T., Laudet, V., Maule, A.G., Quesneville, H., Rosso, M.N., Schiex, T., Smant, G., Weissenbach, J., Wincker, P., Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat. Biotechnol. 26:8 (2008), 909–915.
-
(2008)
Nat. Biotechnol.
, vol.26
, Issue.8
, pp. 909-915
-
-
Abad, P.1
Gouzy, J.2
Aury, J.M.3
Castagnone-Sereno, P.4
Danchin, E.G.5
Deleury, E.6
Perfus-Barbeoch, L.7
Anthouard, V.8
Artiguenave, F.9
Blok, V.C.10
Caillaud, M.C.11
Coutinho, P.M.12
Dasilva, C.13
De Luca, F.14
Deau, F.15
Esquibet, M.16
Flutre, T.17
Goldstone, J.V.18
Hamamouch, N.19
Hewezi, T.20
Jaillon, O.21
Jubin, C.22
Leonetti, P.23
Magliano, M.24
Maier, T.R.25
Markov, G.V.26
McVeigh, P.27
Pesole, G.28
Poulain, J.29
Robinson-Rechavi, M.30
Sallet, E.31
Segurens, B.32
Steinbach, D.33
Tytgat, T.34
Ugarte, E.35
van Ghelder, C.36
Veronico, P.37
Baum, T.J.38
Blaxter, M.39
Bleve-Zacheo, T.40
Davis, E.L.41
Ewbank, J.J.42
Favery, B.43
Grenier, E.44
Henrissat, B.45
Jones, J.T.46
Laudet, V.47
Maule, A.G.48
Quesneville, H.49
Rosso, M.N.50
Schiex, T.51
Smant, G.52
Weissenbach, J.53
Wincker, P.54
more..
-
5
-
-
54149092490
-
Sequence and genetic map of Meloidogyne hapla: a compact nematode genome for plant parasitism
-
Opperman, C.H., Bird, D.M., Williamson, V.M., Rokhsar, D.S., Burke, M., Cohn, J., Cromer, J., Diener, S., Gajan, J., Graham, S., Houfek, T.D., Liu, Q., Mitros, T., Schaff, J., Schaffer, R., Scholl, E., Sosinski, B.R., Thomas, V.P., Windham, E., Sequence and genetic map of Meloidogyne hapla: a compact nematode genome for plant parasitism. Proc. Natl. Acad. Sci. U. S. A. 105:39 (2008), 14802–14807.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, Issue.39
, pp. 14802-14807
-
-
Opperman, C.H.1
Bird, D.M.2
Williamson, V.M.3
Rokhsar, D.S.4
Burke, M.5
Cohn, J.6
Cromer, J.7
Diener, S.8
Gajan, J.9
Graham, S.10
Houfek, T.D.11
Liu, Q.12
Mitros, T.13
Schaff, J.14
Schaffer, R.15
Scholl, E.16
Sosinski, B.R.17
Thomas, V.P.18
Windham, E.19
-
6
-
-
67650786530
-
-
Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium, The Schistosoma japonicum genome reveals features of host-parasite interplay. Please see.
-
Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium, The Schistosoma japonicum genome reveals features of host-parasite interplay, Nature, 460, 7253, (2009) 345-51. Please see https://www.ncbi.nlm.nih.gov/pubmed/19606140.
-
(2009)
Nature
, vol.460
, Issue.7253
, pp. 345-51
-
-
-
7
-
-
67650789618
-
The genome of the blood fluke Schistosoma mansoni
-
Berriman, M., Haas, B.J., LoVerde, P.T., Wilson, R.A., Dillon, G.P., Cerqueira, G.C., Mashiyama, S.T., Al-Lazikani, B., Andrade, L.F., Ashton, P.D., Aslett, M.A., Bartholomeu, D.C., Blandin, G., Caffrey, C.R., Coghlan, A., Coulson, R., Day, T.A., Delcher, A., DeMarco, R., Djikeng, A., Eyre, T., Gamble, J.A., Ghedin, E., Gu, Y., Hertz-Fowler, C., Hirai, H., Hirai, Y., Houston, R., Ivens, A., Johnston, D.A., Lacerda, D., Macedo, C.D., McVeigh, P., Ning, Z., Oliveira, G., Overington, J.P., Parkhill, J., Pertea, M., Pierce, R.J., Protasio, A.V., Quail, M.A., Rajandream, M.A., Rogers, J., Sajid, M., Salzberg, S.L., Stanke, M., Tivey, A.R., White, O., Williams, D.L., Wortman, J., Wu, W., Zamanian, M., Zerlotini, A., Fraser-Liggett, C.M., Barrell, B.G., El-Sayed, N.M., The genome of the blood fluke Schistosoma mansoni. Nature 460:7253 (2009), 352–358.
-
(2009)
Nature
, vol.460
, Issue.7253
, pp. 352-358
-
-
Berriman, M.1
Haas, B.J.2
LoVerde, P.T.3
Wilson, R.A.4
Dillon, G.P.5
Cerqueira, G.C.6
Mashiyama, S.T.7
Al-Lazikani, B.8
Andrade, L.F.9
Ashton, P.D.10
Aslett, M.A.11
Bartholomeu, D.C.12
Blandin, G.13
Caffrey, C.R.14
Coghlan, A.15
Coulson, R.16
Day, T.A.17
Delcher, A.18
DeMarco, R.19
Djikeng, A.20
Eyre, T.21
Gamble, J.A.22
Ghedin, E.23
Gu, Y.24
Hertz-Fowler, C.25
Hirai, H.26
Hirai, Y.27
Houston, R.28
Ivens, A.29
Johnston, D.A.30
Lacerda, D.31
Macedo, C.D.32
McVeigh, P.33
Ning, Z.34
Oliveira, G.35
Overington, J.P.36
Parkhill, J.37
Pertea, M.38
Pierce, R.J.39
Protasio, A.V.40
Quail, M.A.41
Rajandream, M.A.42
Rogers, J.43
Sajid, M.44
Salzberg, S.L.45
Stanke, M.46
Tivey, A.R.47
White, O.48
Williams, D.L.49
Wortman, J.50
Wu, W.51
Zamanian, M.52
Zerlotini, A.53
Fraser-Liggett, C.M.54
Barrell, B.G.55
El-Sayed, N.M.56
more..
-
8
-
-
79952195648
-
The draft genome of the parasitic nematode Trichinella spiralis
-
Mitreva, M., Jasmer, D.P., Zarlenga, D.S., Wang, Z., Abubucker, S., Martin, J., Taylor, C.M., Yin, Y., Fulton, L., Minx, P., Yang, S.P., Warren, W.C., Fulton, R.S., Bhonagiri, V., Zhang, X., Hallsworth-Pepin, K., Clifton, S.W., McCarter, J.P., Appleton, J., Mardis, E.R., Wilson, R.K., The draft genome of the parasitic nematode Trichinella spiralis. Nat. Genet. 43:3 (2011), 228–235.
-
(2011)
Nat. Genet.
, vol.43
, Issue.3
, pp. 228-235
-
-
Mitreva, M.1
Jasmer, D.P.2
Zarlenga, D.S.3
Wang, Z.4
Abubucker, S.5
Martin, J.6
Taylor, C.M.7
Yin, Y.8
Fulton, L.9
Minx, P.10
Yang, S.P.11
Warren, W.C.12
Fulton, R.S.13
Bhonagiri, V.14
Zhang, X.15
Hallsworth-Pepin, K.16
Clifton, S.W.17
McCarter, J.P.18
Appleton, J.19
Mardis, E.R.20
Wilson, R.K.21
more..
-
9
-
-
80053454201
-
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus
-
Kikuchi, T., Cotton, J.A., Dalzell, J.J., Hasegawa, K., Kanzaki, N., McVeigh, P., Takanashi, T., Tsai, I.J., Assefa, S.A., Cock, P.J., Otto, T.D., Hunt, M., Reid, A.J., Sanchez-Flores, A., Tsuchihara, K., Yokoi, T., Larsson, M.C., Miwa, J., Maule, A.G., Sahashi, N., Jones, J.T., Berriman, M., Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathog., 7(9), 2011, e1002219.
-
(2011)
PLoS Pathog.
, vol.7
, Issue.9
, pp. e1002219
-
-
Kikuchi, T.1
Cotton, J.A.2
Dalzell, J.J.3
Hasegawa, K.4
Kanzaki, N.5
McVeigh, P.6
Takanashi, T.7
Tsai, I.J.8
Assefa, S.A.9
Cock, P.J.10
Otto, T.D.11
Hunt, M.12
Reid, A.J.13
Sanchez-Flores, A.14
Tsuchihara, K.15
Yokoi, T.16
Larsson, M.C.17
Miwa, J.18
Maule, A.G.19
Sahashi, N.20
Jones, J.T.21
Berriman, M.22
more..
-
10
-
-
81855167105
-
Ascaris suum draft genome
-
Jex, A.R., Liu, S., Li, B., Young, N.D., Hall, R.S., Li, Y., Yang, L., Zeng, N., Xu, X., Xiong, Z., Chen, F., Wu, X., Zhang, G., Fang, X., Kang, Y., Anderson, G.A., Harris, T.W., Campbell, B.E., Vlaminck, J., Wang, T., Cantacessi, C., Schwarz, E.M., Ranganathan, S., Geldhof, P., Nejsum, P., Sternberg, P.W., Yang, H., Wang, J., Wang, J., Gasser, R.B., Ascaris suum draft genome. Nature 479:7374 (2011), 529–533.
-
(2011)
Nature
, vol.479
, Issue.7374
, pp. 529-533
-
-
Jex, A.R.1
Liu, S.2
Li, B.3
Young, N.D.4
Hall, R.S.5
Li, Y.6
Yang, L.7
Zeng, N.8
Xu, X.9
Xiong, Z.10
Chen, F.11
Wu, X.12
Zhang, G.13
Fang, X.14
Kang, Y.15
Anderson, G.A.16
Harris, T.W.17
Campbell, B.E.18
Vlaminck, J.19
Wang, T.20
Cantacessi, C.21
Schwarz, E.M.22
Ranganathan, S.23
Geldhof, P.24
Nejsum, P.25
Sternberg, P.W.26
Yang, H.27
Wang, J.28
Wang, J.29
Gasser, R.B.30
more..
-
11
-
-
84862777661
-
Whole-genome sequence of Schistosoma haematobium
-
Young, N.D., Jex, A.R., Li, B., Liu, S., Yang, L., Xiong, Z., Li, Y., Cantacessi, C., Hall, R.S., Xu, X., Chen, F., Wu, X., Zerlotini, A., Oliveira, G., Hofmann, A., Zhang, G., Fang, X., Kang, Y., Campbell, B.E., Loukas, A., Ranganathan, S., Rollinson, D., Rinaldi, G., Brindley, P.J., Yang, H., Wang, J., Wang, J., Gasser, R.B., Whole-genome sequence of Schistosoma haematobium. Nat. Genet. 44:2 (2012), 221–225.
-
(2012)
Nat. Genet.
, vol.44
, Issue.2
, pp. 221-225
-
-
Young, N.D.1
Jex, A.R.2
Li, B.3
Liu, S.4
Yang, L.5
Xiong, Z.6
Li, Y.7
Cantacessi, C.8
Hall, R.S.9
Xu, X.10
Chen, F.11
Wu, X.12
Zerlotini, A.13
Oliveira, G.14
Hofmann, A.15
Zhang, G.16
Fang, X.17
Kang, Y.18
Campbell, B.E.19
Loukas, A.20
Ranganathan, S.21
Rollinson, D.22
Rinaldi, G.23
Brindley, P.J.24
Yang, H.25
Wang, J.26
Wang, J.27
Gasser, R.B.28
more..
-
12
-
-
84868274725
-
The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets
-
Godel, C., Kumar, S., Koutsovoulos, G., Ludin, P., Nilsson, D., Comandatore, F., Wrobel, N., Thompson, M., Schmid, C.D., Goto, S., Bringaud, F., Wolstenholme, A., Bandi, C., Epe, C., Kaminsky, R., Blaxter, M., Maser, P., The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. FASEB J. 26:11 (2012), 4650–4661.
-
(2012)
FASEB J.
, vol.26
, Issue.11
, pp. 4650-4661
-
-
Godel, C.1
Kumar, S.2
Koutsovoulos, G.3
Ludin, P.4
Nilsson, D.5
Comandatore, F.6
Wrobel, N.7
Thompson, M.8
Schmid, C.D.9
Goto, S.10
Bringaud, F.11
Wolstenholme, A.12
Bandi, C.13
Epe, C.14
Kaminsky, R.15
Blaxter, M.16
Maser, P.17
-
13
-
-
84869090330
-
Silencing of germline-expressed genes by DNA elimination in somatic cells
-
Wang, J., Mitreva, M., Berriman, M., Thorne, A., Magrini, V., Koutsovoulos, G., Kumar, S., Blaxter, M.L., Davis, R.E., Silencing of germline-expressed genes by DNA elimination in somatic cells. Dev. Cell 23:5 (2012), 1072–1080.
-
(2012)
Dev. Cell
, vol.23
, Issue.5
, pp. 1072-1080
-
-
Wang, J.1
Mitreva, M.2
Berriman, M.3
Thorne, A.4
Magrini, V.5
Koutsovoulos, G.6
Kumar, S.7
Blaxter, M.L.8
Davis, R.E.9
-
14
-
-
84873828746
-
The carcinogenic liver fluke, Clonorchis sinensis: new assembly, reannotation and analysis of the genome and characterization of tissue transcriptomes
-
Huang, Y., Chen, W., Wang, X., Liu, H., Chen, Y., Guo, L., Luo, F., Sun, J., Mao, Q., Liang, P., Xie, Z., Zhou, C., Tian, Y., Lv, X., Huang, L., Zhou, J., Hu, Y., Li, R., Zhang, F., Lei, H., Li, W., Hu, X., Liang, C., Xu, J., Li, X., Yu, X., The carcinogenic liver fluke, Clonorchis sinensis: new assembly, reannotation and analysis of the genome and characterization of tissue transcriptomes. PLoS One, 8(1), 2013, e54732.
-
(2013)
PLoS One
, vol.8
, Issue.1
, pp. e54732
-
-
Huang, Y.1
Chen, W.2
Wang, X.3
Liu, H.4
Chen, Y.5
Guo, L.6
Luo, F.7
Sun, J.8
Mao, Q.9
Liang, P.10
Xie, Z.11
Zhou, C.12
Tian, Y.13
Lv, X.14
Huang, L.15
Zhou, J.16
Hu, Y.17
Li, R.18
Zhang, F.19
Lei, H.20
Li, W.21
Hu, X.22
Liang, C.23
Xu, J.24
Li, X.25
Yu, X.26
more..
-
15
-
-
84875909456
-
The genomes of four tapeworm species reveal adaptations to parasitism
-
Tsai, I.J., Zarowiecki, M., Holroyd, N., Garciarrubio, A., Sanchez-Flores, A., Brooks, K.L., Tracey, A., Bobes, R.J., Fragoso, G., Sciutto, E., Aslett, M., Beasley, H., Bennett, H.M., Cai, J., Camicia, F., Clark, R., Cucher, M., De Silva, N., Day, T.A., Deplazes, P., Estrada, K., Fernandez, C., Holland, P.W., Hou, J., Hu, S., Huckvale, T., Hung, S.S., Kamenetzky, L., Keane, J.A., Kiss, F., Koziol, U., Lambert, O., Liu, K., Luo, X., Luo, Y., Macchiaroli, N., Nichol, S., Paps, J., Parkinson, J., Pouchkina-Stantcheva, N., Riddiford, N., Rosenzvit, M., Salinas, G., Wasmuth, J.D., Zamanian, M., Zheng, Y., Taenia solium Genome Consortium, Cai, X., Soberon, X., Olson, P.D., Laclette, J.P., Brehm, K., Berriman, M., The genomes of four tapeworm species reveal adaptations to parasitism. Nature 496:7443 (2013), 57–63.
-
(2013)
Nature
, vol.496
, Issue.7443
, pp. 57-63
-
-
Tsai, I.J.1
Zarowiecki, M.2
Holroyd, N.3
Garciarrubio, A.4
Sanchez-Flores, A.5
Brooks, K.L.6
Tracey, A.7
Bobes, R.J.8
Fragoso, G.9
Sciutto, E.10
Aslett, M.11
Beasley, H.12
Bennett, H.M.13
Cai, J.14
Camicia, F.15
Clark, R.16
Cucher, M.17
De Silva, N.18
Day, T.A.19
Deplazes, P.20
Estrada, K.21
Fernandez, C.22
Holland, P.W.23
Hou, J.24
Hu, S.25
Huckvale, T.26
Hung, S.S.27
Kamenetzky, L.28
Keane, J.A.29
Kiss, F.30
Koziol, U.31
Lambert, O.32
Liu, K.33
Luo, X.34
Luo, Y.35
Macchiaroli, N.36
Nichol, S.37
Paps, J.38
Parkinson, J.39
Pouchkina-Stantcheva, N.40
Riddiford, N.41
Rosenzvit, M.42
Salinas, G.43
Wasmuth, J.D.44
Zamanian, M.45
Zheng, Y.46
Taenia solium Genome Consortium47
Cai, X.48
Soberon, X.49
Olson, P.D.50
Laclette, J.P.51
Brehm, K.52
Berriman, M.53
more..
-
16
-
-
84878534378
-
Genomics of Loa loa, a wolbachia-free filarial parasite of humans
-
Desjardins, C.A., Cerqueira, G.C., Goldberg, J.M., Dunning Hotopp, J.C., Haas, B.J., Zucker, J., Ribeiro, J.M., Saif, S., Levin, J.Z., Fan, L., Zeng, Q., Russ, C., Wortman, J.R., Fink, D.L., Birren, B.W., Nutman, T.B., Genomics of Loa loa, a wolbachia-free filarial parasite of humans. Nat. Genet. 45:5 (2013), 495–500.
-
(2013)
Nat. Genet.
, vol.45
, Issue.5
, pp. 495-500
-
-
Desjardins, C.A.1
Cerqueira, G.C.2
Goldberg, J.M.3
Dunning Hotopp, J.C.4
Haas, B.J.5
Zucker, J.6
Ribeiro, J.M.7
Saif, S.8
Levin, J.Z.9
Fan, L.10
Zeng, Q.11
Russ, C.12
Wortman, J.R.13
Fink, D.L.14
Birren, B.W.15
Nutman, T.B.16
-
17
-
-
84880426549
-
A lover and a fighter: the genome sequence of an entomopathogenic nematode Heterorhabditis bacteriophora
-
Bai, X., Adams, B.J., Ciche, T.A., Clifton, S., Gaugler, R., Kim, K.S., Spieth, J., Sternberg, P.W., Wilson, R.K., Grewal, P.S., A lover and a fighter: the genome sequence of an entomopathogenic nematode Heterorhabditis bacteriophora. PLoS One, 8(7), 2013, e69618.
-
(2013)
PLoS One
, vol.8
, Issue.7
, pp. e69618
-
-
Bai, X.1
Adams, B.J.2
Ciche, T.A.3
Clifton, S.4
Gaugler, R.5
Kim, K.S.6
Spieth, J.7
Sternberg, P.W.8
Wilson, R.K.9
Grewal, P.S.10
-
18
-
-
84883086002
-
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery
-
Laing, R., Kikuchi, T., Martinelli, A., Tsai, I.J., Beech, R.N., Redman, E., Holroyd, N., Bartley, D.J., Beasley, H., Britton, C., Curran, D., Devaney, E., Gilabert, A., Hunt, M., Jackson, F., Johnston, S.L., Kryukov, I., Li, K., Morrison, A.A., Reid, A.J., Sargison, N., Saunders, G.I., Wasmuth, J.D., Wolstenholme, A., Berriman, M., Gilleard, J.S., Cotton, J.A., The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. Genome Biol., 14(8), 2013, R88.
-
(2013)
Genome Biol.
, vol.14
, Issue.8
, pp. R88
-
-
Laing, R.1
Kikuchi, T.2
Martinelli, A.3
Tsai, I.J.4
Beech, R.N.5
Redman, E.6
Holroyd, N.7
Bartley, D.J.8
Beasley, H.9
Britton, C.10
Curran, D.11
Devaney, E.12
Gilabert, A.13
Hunt, M.14
Jackson, F.15
Johnston, S.L.16
Kryukov, I.17
Li, K.18
Morrison, A.A.19
Reid, A.J.20
Sargison, N.21
Saunders, G.I.22
Wasmuth, J.D.23
Wolstenholme, A.24
Berriman, M.25
Gilleard, J.S.26
Cotton, J.A.27
more..
-
19
-
-
84883129090
-
The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus
-
Schwarz, E.M., Korhonen, P.K., Campbell, B.E., Young, N.D., Jex, A.R., Jabbar, A., Hall, R.S., Mondal, A., Howe, A.C., Pell, J., Hofmann, A., Boag, P.R., Zhu, X.Q., Gregory, T., Loukas, A., Williams, B.A., Antoshechkin, I., Brown, C., Sternberg, P.W., Gasser, R.B., The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus. Genome Biol., 14(8), 2013, R89.
-
(2013)
Genome Biol.
, vol.14
, Issue.8
, pp. R89
-
-
Schwarz, E.M.1
Korhonen, P.K.2
Campbell, B.E.3
Young, N.D.4
Jex, A.R.5
Jabbar, A.6
Hall, R.S.7
Mondal, A.8
Howe, A.C.9
Pell, J.10
Hofmann, A.11
Boag, P.R.12
Zhu, X.Q.13
Gregory, T.14
Loukas, A.15
Williams, B.A.16
Antoshechkin, I.17
Brown, C.18
Sternberg, P.W.19
Gasser, R.B.20
more..
-
20
-
-
84885023462
-
The genome of the hydatid tapeworm Echinococcus granulosus
-
Zheng, H., Zhang, W., Zhang, L., Zhang, Z., Li, J., Lu, G., Zhu, Y., Wang, Y., Huang, Y., Liu, J., Kang, H., Chen, J., Wang, L., Chen, A., Yu, S., Gao, Z., Jin, L., Gu, W., Wang, Z., Zhao, L., Shi, B., Wen, H., Lin, R., Jones, M.K., Brejova, B., Vinar, T., Zhao, G., McManus, D.P., Chen, Z., Zhou, Y., Wang, S., The genome of the hydatid tapeworm Echinococcus granulosus. Nat. Genet. 45:10 (2013), 1168–1175.
-
(2013)
Nat. Genet.
, vol.45
, Issue.10
, pp. 1168-1175
-
-
Zheng, H.1
Zhang, W.2
Zhang, L.3
Zhang, Z.4
Li, J.5
Lu, G.6
Zhu, Y.7
Wang, Y.8
Huang, Y.9
Liu, J.10
Kang, H.11
Chen, J.12
Wang, L.13
Chen, A.14
Yu, S.15
Gao, Z.16
Jin, L.17
Gu, W.18
Wang, Z.19
Zhao, L.20
Shi, B.21
Wen, H.22
Lin, R.23
Jones, M.K.24
Brejova, B.25
Vinar, T.26
Zhao, G.27
McManus, D.P.28
Chen, Z.29
Zhou, Y.30
Wang, S.31
more..
-
21
-
-
84891029458
-
The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda
-
Schiffer, P.H., Kroiher, M., Kraus, C., Koutsovoulos, G.D., Kumar, S., Camps, J.I., Nsah, N.A., Stappert, D., Morris, K., Heger, P., Altmuller, J., Frommolt, P., Nurnberg, P., Thomas, W.K., Blaxter, M.L., Schierenberg, E., The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda. BMC Genomics, 14, 2013, 923.
-
(2013)
BMC Genomics
, vol.14
, pp. 923
-
-
Schiffer, P.H.1
Kroiher, M.2
Kraus, C.3
Koutsovoulos, G.D.4
Kumar, S.5
Camps, J.I.6
Nsah, N.A.7
Stappert, D.8
Morris, K.9
Heger, P.10
Altmuller, J.11
Frommolt, P.12
Nurnberg, P.13
Thomas, W.K.14
Blaxter, M.L.15
Schierenberg, E.16
-
22
-
-
84895883455
-
Genome of the human hookworm Necator americanus
-
Tang, Y.T., Gao, X., Rosa, B.A., Abubucker, S., Hallsworth-Pepin, K., Martin, J., Tyagi, R., Heizer, E., Zhang, X., Bhonagiri-Palsikar, V., Minx, P., Warren, W.C., Wang, Q., Zhan, B., Hotez, P.J., Sternberg, P.W., Dougall, A., Gaze, S.T., Mulvenna, J., Sotillo, J., Ranganathan, S., Rabelo, E.M., Wilson, R.K., Felgner, P.L., Bethony, J., Hawdon, J.M., Gasser, R.B., Loukas, A., Mitreva, M., Genome of the human hookworm Necator americanus. Nat. Genet. 46:3 (2014), 261–269.
-
(2014)
Nat. Genet.
, vol.46
, Issue.3
, pp. 261-269
-
-
Tang, Y.T.1
Gao, X.2
Rosa, B.A.3
Abubucker, S.4
Hallsworth-Pepin, K.5
Martin, J.6
Tyagi, R.7
Heizer, E.8
Zhang, X.9
Bhonagiri-Palsikar, V.10
Minx, P.11
Warren, W.C.12
Wang, Q.13
Zhan, B.14
Hotez, P.J.15
Sternberg, P.W.16
Dougall, A.17
Gaze, S.T.18
Mulvenna, J.19
Sotillo, J.20
Ranganathan, S.21
Rabelo, E.M.22
Wilson, R.K.23
Felgner, P.L.24
Bethony, J.25
Hawdon, J.M.26
Gasser, R.B.27
Loukas, A.28
Mitreva, M.29
more..
-
23
-
-
84897947420
-
The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode
-
Cotton, J.A., Lilley, C.J., Jones, L.M., Kikuchi, T., Reid, A.J., Thorpe, P., Tsai, I.J., Beasley, H., Blok, V., Cock, P.J., Eves-van den Akker, S., Holroyd, N., Hunt, M., Mantelin, S., Naghra, H., Pain, A., Palomares-Rius, J.E., Zarowiecki, M., Berriman, M., Jones, J.T., Urwin, P.E., The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biol., 15(3), 2014, R43.
-
(2014)
Genome Biol.
, vol.15
, Issue.3
, pp. R43
-
-
Cotton, J.A.1
Lilley, C.J.2
Jones, L.M.3
Kikuchi, T.4
Reid, A.J.5
Thorpe, P.6
Tsai, I.J.7
Beasley, H.8
Blok, V.9
Cock, P.J.10
Eves-van den Akker, S.11
Holroyd, N.12
Hunt, M.13
Mantelin, S.14
Naghra, H.15
Pain, A.16
Palomares-Rius, J.E.17
Zarowiecki, M.18
Berriman, M.19
Jones, J.T.20
Urwin, P.E.21
more..
-
24
-
-
84903540511
-
Genome and transcriptome of the porcine whipworm Trichuris suis
-
Jex, A.R., Nejsum, P., Schwarz, E.M., Hu, L., Young, N.D., Hall, R.S., Korhonen, P.K., Liao, S., Thamsborg, S., Xia, J., Xu, P., Wang, S., Scheerlinck, J.P., Hofmann, A., Sternberg, P.W., Wang, J., Gasser, R.B., Genome and transcriptome of the porcine whipworm Trichuris suis. Nat. Genet. 46:7 (2014), 701–706.
-
(2014)
Nat. Genet.
, vol.46
, Issue.7
, pp. 701-706
-
-
Jex, A.R.1
Nejsum, P.2
Schwarz, E.M.3
Hu, L.4
Young, N.D.5
Hall, R.S.6
Korhonen, P.K.7
Liao, S.8
Thamsborg, S.9
Xia, J.10
Xu, P.11
Wang, S.12
Scheerlinck, J.P.13
Hofmann, A.14
Sternberg, P.W.15
Wang, J.16
Gasser, R.B.17
-
25
-
-
84903542295
-
Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction
-
Foth, B.J., Tsai, I.J., Reid, A.J., Bancroft, A.J., Nichol, S., Tracey, A., Holroyd, N., Cotton, J.A., Stanley, E.J., Zarowiecki, M., Liu, J.Z., Huckvale, T., Cooper, P.J., Grencis, R.K., Berriman, M., Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction. Nat. Genet. 46:7 (2014), 693–700.
-
(2014)
Nat. Genet.
, vol.46
, Issue.7
, pp. 693-700
-
-
Foth, B.J.1
Tsai, I.J.2
Reid, A.J.3
Bancroft, A.J.4
Nichol, S.5
Tracey, A.6
Holroyd, N.7
Cotton, J.A.8
Stanley, E.J.9
Zarowiecki, M.10
Liu, J.Z.11
Huckvale, T.12
Cooper, P.J.13
Grencis, R.K.14
Berriman, M.15
-
26
-
-
84904153902
-
The Opisthorchis viverrini genome provides insights into life in the bile duct
-
Young, N.D., Nagarajan, N., Lin, S.J., Korhonen, P.K., Jex, A.R., Hall, R.S., Safavi-Hemami, H., Kaewkong, W., Bertrand, D., Gao, S., Seet, Q., Wongkham, S., Teh, B.T., Wongkham, C., Intapan, P.M., Maleewong, W., Yang, X., Hu, M., Wang, Z., Hofmann, A., Sternberg, P.W., Tan, P., Wang, J., Gasser, R.B., The Opisthorchis viverrini genome provides insights into life in the bile duct. Nat. Commun., 5, 2014, 4378.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4378
-
-
Young, N.D.1
Nagarajan, N.2
Lin, S.J.3
Korhonen, P.K.4
Jex, A.R.5
Hall, R.S.6
Safavi-Hemami, H.7
Kaewkong, W.8
Bertrand, D.9
Gao, S.10
Seet, Q.11
Wongkham, S.12
Teh, B.T.13
Wongkham, C.14
Intapan, P.M.15
Maleewong, W.16
Yang, X.17
Hu, M.18
Wang, Z.19
Hofmann, A.20
Sternberg, P.W.21
Tan, P.22
Wang, J.23
Gasser, R.B.24
more..
-
27
-
-
84907382373
-
Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis
-
Tallon, L.J., Liu, X., Bennuru, S., Chibucos, M.C., Godinez, A., Ott, S., Zhao, X., Sadzewicz, L., Fraser, C.M., Nutman, T.B., Dunning Hotopp, J.C., Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis. BMC Genomics, 15, 2014, 788.
-
(2014)
BMC Genomics
, vol.15
, pp. 788
-
-
Tallon, L.J.1
Liu, X.2
Bennuru, S.3
Chibucos, M.C.4
Godinez, A.5
Ott, S.6
Zhao, X.7
Sadzewicz, L.8
Fraser, C.M.9
Nutman, T.B.10
Dunning Hotopp, J.C.11
-
28
-
-
84965183652
-
The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion
-
Bennett, H.M., Mok, H.P., Gkrania-Klotsas, E., Tsai, I.J., Stanley, E.J., Antoun, N.M., Coghlan, A., Harsha, B., Traini, A., Ribeiro, D.M., Steinbiss, S., Lucas, S.B., Allinson, K.S., Price, S.J., Santarius, T.S., Carmichael, A.J., Chiodini, P.L., Holroyd, N., Dean, A.F., Berriman, M., The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion. Genome Biol., 15(11), 2014, 510.
-
(2014)
Genome Biol.
, vol.15
, Issue.11
, pp. 510
-
-
Bennett, H.M.1
Mok, H.P.2
Gkrania-Klotsas, E.3
Tsai, I.J.4
Stanley, E.J.5
Antoun, N.M.6
Coghlan, A.7
Harsha, B.8
Traini, A.9
Ribeiro, D.M.10
Steinbiss, S.11
Lucas, S.B.12
Allinson, K.S.13
Price, S.J.14
Santarius, T.S.15
Carmichael, A.J.16
Chiodini, P.L.17
Holroyd, N.18
Dean, A.F.19
Berriman, M.20
more..
-
29
-
-
84939290919
-
Genetic blueprint of the zoonotic pathogen Toxocara canis
-
Zhu, X.Q., Korhonen, P.K., Cai, H., Young, N.D., Nejsum, P., von Samson-Himmelstjerna, G., Boag, P.R., Tan, P., Li, Q., Min, J., Yang, Y., Wang, X., Fang, X., Hall, R.S., Hofmann, A., Sternberg, P.W., Jex, A.R., Gasser, R.B., Genetic blueprint of the zoonotic pathogen Toxocara canis. Nat. Commun., 6, 2015, 6145.
-
(2015)
Nat. Commun.
, vol.6
, pp. 6145
-
-
Zhu, X.Q.1
Korhonen, P.K.2
Cai, H.3
Young, N.D.4
Nejsum, P.5
von Samson-Himmelstjerna, G.6
Boag, P.R.7
Tan, P.8
Li, Q.9
Min, J.10
Yang, Y.11
Wang, X.12
Fang, X.13
Hall, R.S.14
Hofmann, A.15
Sternberg, P.W.16
Jex, A.R.17
Gasser, R.B.18
-
30
-
-
84925862867
-
The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families
-
Schwarz, E.M., Hu, Y., Antoshechkin, I., Miller, M.M., Sternberg, P.W., Aroian, R.V., The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families. Nat. Genet. 47:4 (2015), 416–422.
-
(2015)
Nat. Genet.
, vol.47
, Issue.4
, pp. 416-422
-
-
Schwarz, E.M.1
Hu, Y.2
Antoshechkin, I.3
Miller, M.M.4
Sternberg, P.W.5
Aroian, R.V.6
-
31
-
-
84937073781
-
The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution
-
Cwiklinski, K., Dalton, J.P., Dufresne, P.J., La Course, J., Williams, D.J., Hodgkinson, J., Paterson, S., The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution. Genome Biol., 16, 2015, 71.
-
(2015)
Genome Biol.
, vol.16
, pp. 71
-
-
Cwiklinski, K.1
Dalton, J.P.2
Dufresne, P.J.3
La Course, J.4
Williams, D.J.5
Hodgkinson, J.6
Paterson, S.7
-
32
-
-
84955745157
-
Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks
-
Dillman, A.R., Macchietto, M., Porter, C.F., Rogers, A., Williams, B., Antoshechkin, I., Lee, M.M., Goodwin, Z., Lu, X., Lewis, E.E., Goodrich-Blair, H., Stock, S.P., Adams, B.J., Sternberg, P.W., Mortazavi, A., Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks. Genome Biol., 16, 2015, 200.
-
(2015)
Genome Biol.
, vol.16
, pp. 200
-
-
Dillman, A.R.1
Macchietto, M.2
Porter, C.F.3
Rogers, A.4
Williams, B.5
Antoshechkin, I.6
Lee, M.M.7
Goodwin, Z.8
Lu, X.9
Lewis, E.E.10
Goodrich-Blair, H.11
Stock, S.P.12
Adams, B.J.13
Sternberg, P.W.14
Mortazavi, A.15
-
33
-
-
84943427290
-
Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano
-
Wasik, K., Gurtowski, J., Zhou, X., Ramos, O.M., Delas, M.J., Battistoni, G., El Demerdash, O., Falciatori, I., Vizoso, D.B., Smith, A.D., Ladurner, P., Scharer, L., McCombie, W.R., Hannon, G.J., Schatz, M., Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano. Proc. Natl. Acad. Sci. U. S. A. 112:40 (2015), 12462–12467.
-
(2015)
Proc. Natl. Acad. Sci. U. S. A.
, vol.112
, Issue.40
, pp. 12462-12467
-
-
Wasik, K.1
Gurtowski, J.2
Zhou, X.3
Ramos, O.M.4
Delas, M.J.5
Battistoni, G.6
El Demerdash, O.7
Falciatori, I.8
Vizoso, D.B.9
Smith, A.D.10
Ladurner, P.11
Scharer, L.12
McCombie, W.R.13
Hannon, G.J.14
Schatz, M.15
-
34
-
-
84959527280
-
The genomic basis of parasitism in the Strongyloides clade of nematodes
-
Hunt, V.L., Tsai, I.J., Coghlan, A., Reid, A.J., Holroyd, N., Foth, B.J., Tracey, A., Cotton, J.A., Stanley, E.J., Beasley, H., Bennett, H.M., Brooks, K., Harsha, B., Kajitani, R., Kulkarni, A., Harbecke, D., Nagayasu, E., Nichol, S., Ogura, Y., Quail, M.A., Randle, N., Xia, D., Brattig, N.W., Soblik, H., Ribeiro, D.M., Sanchez-Flores, A., Hayashi, T., Itoh, T., Denver, D.R., Grant, W., Stoltzfus, J.D., Lok, J.B., Murayama, H., Wastling, J., Streit, A., Kikuchi, T., Viney, M., Berriman, M., The genomic basis of parasitism in the Strongyloides clade of nematodes. Nat. Genet. 48:3 (2016), 299–307.
-
(2016)
Nat. Genet.
, vol.48
, Issue.3
, pp. 299-307
-
-
Hunt, V.L.1
Tsai, I.J.2
Coghlan, A.3
Reid, A.J.4
Holroyd, N.5
Foth, B.J.6
Tracey, A.7
Cotton, J.A.8
Stanley, E.J.9
Beasley, H.10
Bennett, H.M.11
Brooks, K.12
Harsha, B.13
Kajitani, R.14
Kulkarni, A.15
Harbecke, D.16
Nagayasu, E.17
Nichol, S.18
Ogura, Y.19
Quail, M.A.20
Randle, N.21
Xia, D.22
Brattig, N.W.23
Soblik, H.24
Ribeiro, D.M.25
Sanchez-Flores, A.26
Hayashi, T.27
Itoh, T.28
Denver, D.R.29
Grant, W.30
Stoltzfus, J.D.31
Lok, J.B.32
Murayama, H.33
Wastling, J.34
Streit, A.35
Kikuchi, T.36
Viney, M.37
Berriman, M.38
more..
-
35
-
-
84956693743
-
Phylogenomic and biogeographic reconstruction of the Trichinella complex
-
Korhonen, P.K., Pozio, E., La Rosa, G., Chang, B.C., Koehler, A.V., Hoberg, E.P., Boag, P.R., Tan, P., Jex, A.R., Hofmann, A., Sternberg, P.W., Young, N.D., Gasser, R.B., Phylogenomic and biogeographic reconstruction of the Trichinella complex. Nat. Commun., 7, 2016, 10513.
-
(2016)
Nat. Commun.
, vol.7
, pp. 10513
-
-
Korhonen, P.K.1
Pozio, E.2
La Rosa, G.3
Chang, B.C.4
Koehler, A.V.5
Hoberg, E.P.6
Boag, P.R.7
Tan, P.8
Jex, A.R.9
Hofmann, A.10
Sternberg, P.W.11
Young, N.D.12
Gasser, R.B.13
-
36
-
-
84960977281
-
Population genomics of the filarial nematode parasite Wuchereria bancrofti from mosquitoes
-
Small, S.T., Reimer, L.J., Tisch, D.J., King, C.L., Christensen, B.M., Siba, P.M., Kazura, J.W., Serre, D., Zimmerman, P.A., Population genomics of the filarial nematode parasite Wuchereria bancrofti from mosquitoes. Mol. Ecol. 25:7 (2016), 1465–1477.
-
(2016)
Mol. Ecol.
, vol.25
, Issue.7
, pp. 1465-1477
-
-
Small, S.T.1
Reimer, L.J.2
Tisch, D.J.3
King, C.L.4
Christensen, B.M.5
Siba, P.M.6
Kazura, J.W.7
Serre, D.8
Zimmerman, P.A.9
-
37
-
-
84957818783
-
Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention
-
McNulty, S.N., Strube, C., Rosa, B.A., Martin, J.C., Tyagi, R., Choi, Y.J., Wang, Q., Hallsworth Pepin, K., Zhang, X., Ozersky, P., Wilson, R.K., Sternberg, P.W., Gasser, R.B., Mitreva, M., Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention. Sci. Rep., 6, 2016, 20316.
-
(2016)
Sci. Rep.
, vol.6
, pp. 20316
-
-
McNulty, S.N.1
Strube, C.2
Rosa, B.A.3
Martin, J.C.4
Tyagi, R.5
Choi, Y.J.6
Wang, Q.7
Hallsworth Pepin, K.8
Zhang, X.9
Ozersky, P.10
Wilson, R.K.11
Sternberg, P.W.12
Gasser, R.B.13
Mitreva, M.14
-
38
-
-
85020564958
-
The 50 Helminth Genomes Initiative
-
Accessed 6 October 2016
-
Wellcome Trust Sanger Institute, The 50 Helminth Genomes Initiative. 2014 http://www.sanger.ac.uk/science/collaboration/50hgp, Accessed 6 October 2016.
-
(2014)
-
-
Wellcome Trust Sanger Institute1
-
39
-
-
84976870063
-
International nucleotide sequence database the international nucleotide sequence database collaboration
-
Cochrane, G., Karsch-Mizrachi, I., Takagi, T., International nucleotide sequence database the international nucleotide sequence database collaboration. Nucleic Acids Res. 44:D1 (2016), D48–D50.
-
(2016)
Nucleic Acids Res.
, vol.44
, Issue.D1
, pp. D48-D50
-
-
Cochrane, G.1
Karsch-Mizrachi, I.2
Takagi, T.3
-
40
-
-
84891804533
-
WormBase: annotating many nematode genomes
-
Howe, K., Davis, P., Paulini, M., Tuli, M.A., Williams, G., Yook, K., Durbin, R., Kersey, P., Sternberg, P.W., WormBase: annotating many nematode genomes. Worm 1:1 (2012), 15–21.
-
(2012)
Worm
, vol.1
, Issue.1
, pp. 15-21
-
-
Howe, K.1
Davis, P.2
Paulini, M.3
Tuli, M.A.4
Williams, G.5
Yook, K.6
Durbin, R.7
Kersey, P.8
Sternberg, P.W.9
-
41
-
-
84862208151
-
GeneDB—an annotation database for pathogens
-
Database issue
-
Logan-Klumpler, F.J., De Silva, N., Boehme, U., Rogers, M.B., Velarde, G., McQuillan, J.A., Carver, T., Aslett, M., Olsen, C., Subramanian, S., Phan, I., Farris, C., Mitra, S., Ramasamy, G., Wang, H., Tivey, A., Jackson, A., Houston, R., Parkhill, J., Holden, M., Harb, O.S., Brunk, B.P., Myler, P.J., Roos, D., Carrington, M., Smith, D.F., Hertz-Fowler, C., Berriman, M., GeneDB—an annotation database for pathogens. Nucleic Acids Res. 40 (2012), D98–D108 Database issue.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D98-D108
-
-
Logan-Klumpler, F.J.1
De Silva, N.2
Boehme, U.3
Rogers, M.B.4
Velarde, G.5
McQuillan, J.A.6
Carver, T.7
Aslett, M.8
Olsen, C.9
Subramanian, S.10
Phan, I.11
Farris, C.12
Mitra, S.13
Ramasamy, G.14
Wang, H.15
Tivey, A.16
Jackson, A.17
Houston, R.18
Parkhill, J.19
Holden, M.20
Harb, O.S.21
Brunk, B.P.22
Myler, P.J.23
Roos, D.24
Carrington, M.25
Smith, D.F.26
Hertz-Fowler, C.27
Berriman, M.28
more..
-
42
-
-
84055178433
-
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
-
Holt, C., Yandell, M., MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinf., 12, 2011, 491.
-
(2011)
BMC Bioinf.
, vol.12
, pp. 491
-
-
Holt, C.1
Yandell, M.2
-
43
-
-
33747830848
-
AUGUSTUS: ab initio prediction of alternative transcripts
-
Web Server issue
-
Stanke, M., Keller, O., Gunduz, I., Hayes, A., Waack, S., Morgenstern, B., AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic Acids Res. 34 (2006), W435–W439 Web Server issue.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W435-W439
-
-
Stanke, M.1
Keller, O.2
Gunduz, I.3
Hayes, A.4
Waack, S.5
Morgenstern, B.6
-
44
-
-
57149099395
-
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
-
Ter-Hovhannisyan, V., Lomsadze, A., Chernoff, Y.O., Borodovsky, M., Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 18:12 (2008), 1979–1990.
-
(2008)
Genome Res.
, vol.18
, Issue.12
, pp. 1979-1990
-
-
Ter-Hovhannisyan, V.1
Lomsadze, A.2
Chernoff, Y.O.3
Borodovsky, M.4
-
45
-
-
2942544417
-
Gene finding in novel genomes
-
Korf, I., Gene finding in novel genomes. BMC Bioinf., 5, 2004, 59.
-
(2004)
BMC Bioinf.
, vol.5
, pp. 59
-
-
Korf, I.1
-
46
-
-
79960403324
-
genBlastG: using BLAST searches to build homologous gene models
-
She, R., Chu, J.S., Uyar, B., Wang, J., Wang, K., Chen, N., genBlastG: using BLAST searches to build homologous gene models. Bioinformatics 27:15 (2011), 2141–2143.
-
(2011)
Bioinformatics
, vol.27
, Issue.15
, pp. 2141-2143
-
-
She, R.1
Chu, J.S.2
Uyar, B.3
Wang, J.4
Wang, K.5
Chen, N.6
-
47
-
-
79956022134
-
RATT: rapid annotation transfer tool
-
Otto, T.D., Dillon, G.P., Degrave, W.S., Berriman, M., RATT: rapid annotation transfer tool. Nucleic Acids Res., 39(9), 2011, e57.
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.9
, pp. e57
-
-
Otto, T.D.1
Dillon, G.P.2
Degrave, W.S.3
Berriman, M.4
-
48
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
Lagesen, K., Hallin, P., Rodland, E.A., Staerfeldt, H.H., Rognes, T., Ussery, D.W., RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:9 (2007), 3100–3108.
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.9
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rodland, E.A.3
Staerfeldt, H.H.4
Rognes, T.5
Ussery, D.W.6
-
49
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe, T.M., Eddy, S.R., tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:5 (1997), 955–964.
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.5
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
50
-
-
84946094179
-
Rfam 12.0: updates to the RNA families database
-
Database issue
-
Nawrocki, E.P., Burge, S.W., Bateman, A., Daub, J., Eberhardt, R.Y., Eddy, S.R., Floden, E.W., Gardner, P.P., Jones, T.A., Tate, J., Finn, R.D., Rfam 12.0: updates to the RNA families database. Nucleic Acids Res. 43 (2015), D130–D137 Database issue.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D130-D137
-
-
Nawrocki, E.P.1
Burge, S.W.2
Bateman, A.3
Daub, J.4
Eberhardt, R.Y.5
Eddy, S.R.6
Floden, E.W.7
Gardner, P.P.8
Jones, T.A.9
Tate, J.10
Finn, R.D.11
-
51
-
-
84946069451
-
-
UniProt Consortium,, 43, (Database issue), () D204-12. Please see.
-
UniProt Consortium, UniProt: a hub for protein information, Nucleic Acids Res, 43, (Database issue), (2015) D204-12. Please see https://www.ncbi.nlm.nih.gov/pubmed/25348405.
-
(2015)
UniProt: a hub for protein information, Nucleic Acids Res
-
-
-
52
-
-
84899518211
-
InterProScan 5: genome-scale protein function classification
-
Jones, P., Binns, D., Chang, H.Y., Fraser, M., Li, W., McAnulla, C., McWilliam, H., Maslen, J., Mitchell, A., Nuka, G., Pesseat, S., Quinn, A.F., Sangrador-Vegas, A., Scheremetjew, M., Yong, S.Y., Lopez, R., Hunter, S., InterProScan 5: genome-scale protein function classification. Bioinformatics 30:9 (2014), 1236–1240.
-
(2014)
Bioinformatics
, vol.30
, Issue.9
, pp. 1236-1240
-
-
Jones, P.1
Binns, D.2
Chang, H.Y.3
Fraser, M.4
Li, W.5
McAnulla, C.6
McWilliam, H.7
Maslen, J.8
Mitchell, A.9
Nuka, G.10
Pesseat, S.11
Quinn, A.F.12
Sangrador-Vegas, A.13
Scheremetjew, M.14
Yong, S.Y.15
Lopez, R.16
Hunter, S.17
-
53
-
-
84946074739
-
The InterPro protein families database: the classification resource after 15 years
-
Database issue
-
Mitchell, A., Chang, H.Y., Daugherty, L., Fraser, M., Hunter, S., Lopez, R., McAnulla, C., McMenamin, C., Nuka, G., Pesseat, S., Sangrador-Vegas, A., Scheremetjew, M., Rato, C., Yong, S.Y., Bateman, A., Punta, M., Attwood, T.K., Sigrist, C.J., Redaschi, N., Rivoire, C., Xenarios, I., Kahn, D., Guyot, D., Bork, P., Letunic, I., Gough, J., Oates, M., Haft, D., Huang, H., Natale, D.A., Wu, C.H., Orengo, C., Sillitoe, I., Mi, H., Thomas, P.D., Finn, R.D., The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Res. 43 (2015), D213–D221 Database issue.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D213-D221
-
-
Mitchell, A.1
Chang, H.Y.2
Daugherty, L.3
Fraser, M.4
Hunter, S.5
Lopez, R.6
McAnulla, C.7
McMenamin, C.8
Nuka, G.9
Pesseat, S.10
Sangrador-Vegas, A.11
Scheremetjew, M.12
Rato, C.13
Yong, S.Y.14
Bateman, A.15
Punta, M.16
Attwood, T.K.17
Sigrist, C.J.18
Redaschi, N.19
Rivoire, C.20
Xenarios, I.21
Kahn, D.22
Guyot, D.23
Bork, P.24
Letunic, I.25
Gough, J.26
Oates, M.27
Haft, D.28
Huang, H.29
Natale, D.A.30
Wu, C.H.31
Orengo, C.32
Sillitoe, I.33
Mi, H.34
Thomas, P.D.35
Finn, R.D.36
more..
-
54
-
-
84976865403
-
The Pfam protein families database: towards a more sustainable future
-
Finn, R.D., Coggill, P., Eberhardt, R.Y., Eddy, S.R., Mistry, J., Mitchell, A.L., Potter, S.C., Punta, M., Qureshi, M., Sangrador-Vegas, A., Salazar, G.A., Tate, J., Bateman, A., The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res. 44:D1 (2016), D279–D285.
-
(2016)
Nucleic Acids Res.
, vol.44
, Issue.D1
, pp. D279-D285
-
-
Finn, R.D.1
Coggill, P.2
Eberhardt, R.Y.3
Eddy, S.R.4
Mistry, J.5
Mitchell, A.L.6
Potter, S.C.7
Punta, M.8
Qureshi, M.9
Sangrador-Vegas, A.10
Salazar, G.A.11
Tate, J.12
Bateman, A.13
-
55
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., Harris, M.A., Hill, D.P., Issel-Tarver, L., Kasarskis, A., Lewis, S., Matese, J.C., Richardson, J.E., Ringwald, M., Rubin, G.M., Sherlock, G., Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25:1 (2000), 25–29.
-
(2000)
Nat. Genet.
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
56
-
-
84976878197
-
Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants
-
Petryszak, R., Keays, M., Tang, Y.A., Fonseca, N.A., Barrera, E., Burdett, T., Fullgrabe, A., Fuentes, A.M., Jupp, S., Koskinen, S., Mannion, O., Huerta, L., Megy, K., Snow, C., Williams, E., Barzine, M., Hastings, E., Weisser, H., Wright, J., Jaiswal, P., Huber, W., Choudhary, J., Parkinson, H.E., Brazma, A., Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Res. 44:D1 (2016), D746–G752.
-
(2016)
Nucleic Acids Res.
, vol.44
, Issue.D1
, pp. D746-G752
-
-
Petryszak, R.1
Keays, M.2
Tang, Y.A.3
Fonseca, N.A.4
Barrera, E.5
Burdett, T.6
Fullgrabe, A.7
Fuentes, A.M.8
Jupp, S.9
Koskinen, S.10
Mannion, O.11
Huerta, L.12
Megy, K.13
Snow, C.14
Williams, E.15
Barzine, M.16
Hastings, E.17
Weisser, H.18
Wright, J.19
Jaiswal, P.20
Huber, W.21
Choudhary, J.22
Parkinson, H.E.23
Brazma, A.24
more..
-
57
-
-
84871809302
-
STAR: ultrafast universal RNA-seq aligner
-
Dobin, A., Davis, C.A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., Gingeras, T.R., STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29:1 (2013), 15–21.
-
(2013)
Bioinformatics
, vol.29
, Issue.1
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
58
-
-
84855272287
-
A deep sequencing approach to comparatively analyze the transcriptome of lifecycle stages of the filarial worm, Brugia malayi
-
Choi, Y.J., Ghedin, E., Berriman, M., McQuillan, J., Holroyd, N., Mayhew, G.F., Christensen, B.M., Michalski, M.L., A deep sequencing approach to comparatively analyze the transcriptome of lifecycle stages of the filarial worm, Brugia malayi. PLoS Negl. Trop. Dis., 5(12), 2011, e1409.
-
(2011)
PLoS Negl. Trop. Dis.
, vol.5
, Issue.12
, pp. e1409
-
-
Choi, Y.J.1
Ghedin, E.2
Berriman, M.3
McQuillan, J.4
Holroyd, N.5
Mayhew, G.F.6
Christensen, B.M.7
Michalski, M.L.8
-
59
-
-
84969429404
-
The effect of In vitro cultivation on the transcriptome of adult brugia malayi
-
Ballesteros, C., Tritten, L., O'Neill, M., Burkman, E., Zaky, W.I., Xia, J., Moorhead, A., Williams, S.A., Geary, T.G., The effect of In vitro cultivation on the transcriptome of adult brugia malayi. PLoS Negl. Trop. Dis., 10(1), 2016, e0004311.
-
(2016)
PLoS Negl. Trop. Dis.
, vol.10
, Issue.1
, pp. e0004311
-
-
Ballesteros, C.1
Tritten, L.2
O'Neill, M.3
Burkman, E.4
Zaky, W.I.5
Xia, J.6
Moorhead, A.7
Williams, S.A.8
Geary, T.G.9
-
60
-
-
84996538227
-
The genome of Onchocerca volvulus, agent of river blindness
-
Cotton, J.A., Bennuru, S., Grote, A., Harsha, B., Tracey, A., Beech, R., Doyle, S.R., Dunn, M., Hotopp, J.C., Holroyd, N., Kikuchi, T., Lambert, O., Mhashilkar, A., Mutowo, P., Nursimulu, N., Ribeiro, J.M., Rogers, M.B., Stanley, E., Swapna, L.S., Tsai, I.J., Unnasch, T.R., Voronin, D., Parkinson, J., Nutman, T.B., Ghedin, E., Berriman, M., Lustigman, S., The genome of Onchocerca volvulus, agent of river blindness. Nat. Microbiol., 2, 2016, 16216.
-
(2016)
Nat. Microbiol.
, vol.2
, pp. 16216
-
-
Cotton, J.A.1
Bennuru, S.2
Grote, A.3
Harsha, B.4
Tracey, A.5
Beech, R.6
Doyle, S.R.7
Dunn, M.8
Hotopp, J.C.9
Holroyd, N.10
Kikuchi, T.11
Lambert, O.12
Mhashilkar, A.13
Mutowo, P.14
Nursimulu, N.15
Ribeiro, J.M.16
Rogers, M.B.17
Stanley, E.18
Swapna, L.S.19
Tsai, I.J.20
Unnasch, T.R.21
Voronin, D.22
Parkinson, J.23
Nutman, T.B.24
Ghedin, E.25
Berriman, M.26
Lustigman, S.27
more..
-
61
-
-
84948678492
-
An integrated multiomics approach to identify candidate antigens for serodiagnosis of human onchocerciasis
-
McNulty, S.N., Rosa, B.A., Fischer, P.U., Rumsey, J.M., Erdmann-Gilmore, P., Curtis, K.C., Specht, S., Townsend, R.R., Weil, G.J., Mitreva, M., An integrated multiomics approach to identify candidate antigens for serodiagnosis of human onchocerciasis. Mol. Cell. Proteomics 14:12 (2015), 3224–3233.
-
(2015)
Mol. Cell. Proteomics
, vol.14
, Issue.12
, pp. 3224-3233
-
-
McNulty, S.N.1
Rosa, B.A.2
Fischer, P.U.3
Rumsey, J.M.4
Erdmann-Gilmore, P.5
Curtis, K.C.6
Specht, S.7
Townsend, R.R.8
Weil, G.J.9
Mitreva, M.10
-
62
-
-
84869078220
-
RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways
-
Stoltzfus, J.D., Minot, S., Berriman, M., Nolan, T.J., Lok, J.B., RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways. PLoS Negl. Trop. Dis., 6(10), 2012, e1854.
-
(2012)
PLoS Negl. Trop. Dis.
, vol.6
, Issue.10
, pp. e1854
-
-
Stoltzfus, J.D.1
Minot, S.2
Berriman, M.3
Nolan, T.J.4
Lok, J.B.5
-
63
-
-
84856579279
-
A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni
-
Protasio, A.V., Tsai, I.J., Babbage, A., Nichol, S., Hunt, M., Aslett, M.A., De Silva, N., Velarde, G.S., Anderson, T.J., Clark, R.C., Davidson, C., Dillon, G.P., Holroyd, N.E., LoVerde, P.T., Lloyd, C., McQuillan, J., Oliveira, G., Otto, T.D., Parker-Manuel, S.J., Quail, M.A., Wilson, R.A., Zerlotini, A., Dunne, D.W., Berriman, M., A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni. PLoS Negl. Trop. Dis., 6(1), 2012, e1455.
-
(2012)
PLoS Negl. Trop. Dis.
, vol.6
, Issue.1
, pp. e1455
-
-
Protasio, A.V.1
Tsai, I.J.2
Babbage, A.3
Nichol, S.4
Hunt, M.5
Aslett, M.A.6
De Silva, N.7
Velarde, G.S.8
Anderson, T.J.9
Clark, R.C.10
Davidson, C.11
Dillon, G.P.12
Holroyd, N.E.13
LoVerde, P.T.14
Lloyd, C.15
McQuillan, J.16
Oliveira, G.17
Otto, T.D.18
Parker-Manuel, S.J.19
Quail, M.A.20
Wilson, R.A.21
Zerlotini, A.22
Dunne, D.W.23
Berriman, M.24
more..
-
64
-
-
84874382532
-
Adult somatic stem cells in the human parasite Schistosoma mansoni
-
Collins, J.J. 3rd, Wang, B., Lambrus, B.G., Tharp, M.E., Iyer, H., Newmark, P.A., Adult somatic stem cells in the human parasite Schistosoma mansoni. Nature 494:7438 (2013), 476–479.
-
(2013)
Nature
, vol.494
, Issue.7438
, pp. 476-479
-
-
Collins, J.J.1
Wang, B.2
Lambrus, B.G.3
Tharp, M.E.4
Iyer, H.5
Newmark, P.A.6
-
65
-
-
84888235285
-
Combinatory microarray and SuperSAGE analyses identify pairing-dependently transcribed genes in Schistosoma mansoni males, including follistatin
-
Leutner, S., Oliveira, K.C., Rotter, B., Beckmann, S., Buro, C., Hahnel, S., Kitajima, J.P., Verjovski-Almeida, S., Winter, P., Grevelding, C.G., Combinatory microarray and SuperSAGE analyses identify pairing-dependently transcribed genes in Schistosoma mansoni males, including follistatin. PLoS Negl. Trop. Dis., 7(11), 2013, e2532.
-
(2013)
PLoS Negl. Trop. Dis.
, vol.7
, Issue.11
, pp. e2532
-
-
Leutner, S.1
Oliveira, K.C.2
Rotter, B.3
Beckmann, S.4
Buro, C.5
Hahnel, S.6
Kitajima, J.P.7
Verjovski-Almeida, S.8
Winter, P.9
Grevelding, C.G.10
-
66
-
-
84881050928
-
Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoni
-
Wang, B., Collins, J.J. 3rd, Newmark, P.A., Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoni. Elife, 2, 2013, e00768.
-
(2013)
Elife
, vol.2
, pp. e00768
-
-
Wang, B.1
Collins, J.J.2
Newmark, P.A.3
-
67
-
-
84890114435
-
Genetic and molecular basis of drug resistance and species-specific drug action in schistosome parasites
-
Valentim, C.L., Cioli, D., Chevalier, F.D., Cao, X., Taylor, A.B., Holloway, S.P., Pica-Mattoccia, L., Guidi, A., Basso, A., Tsai, I.J., Berriman, M., Carvalho-Queiroz, C., Almeida, M., Aguilar, H., Frantz, D.E., Hart, P.J., LoVerde, P.T., Anderson, T.J., Genetic and molecular basis of drug resistance and species-specific drug action in schistosome parasites. Science 342:6164 (2013), 1385–1389.
-
(2013)
Science
, vol.342
, Issue.6164
, pp. 1385-1389
-
-
Valentim, C.L.1
Cioli, D.2
Chevalier, F.D.3
Cao, X.4
Taylor, A.B.5
Holloway, S.P.6
Pica-Mattoccia, L.7
Guidi, A.8
Basso, A.9
Tsai, I.J.10
Berriman, M.11
Carvalho-Queiroz, C.12
Almeida, M.13
Aguilar, H.14
Frantz, D.E.15
Hart, P.J.16
LoVerde, P.T.17
Anderson, T.J.18
-
68
-
-
59949096873
-
EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates
-
Vilella, A.J., Severin, J., Ureta-Vidal, A., Heng, L., Durbin, R., Birney, E., EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res. 19:2 (2009), 327–335.
-
(2009)
Genome Res.
, vol.19
, Issue.2
, pp. 327-335
-
-
Vilella, A.J.1
Severin, J.2
Ureta-Vidal, A.3
Heng, L.4
Durbin, R.5
Birney, E.6
-
69
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., Madden, T.L., BLAST+: architecture and applications. BMC Bioinf., 10, 2009, 421.
-
(2009)
BMC Bioinf.
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
70
-
-
84976875034
-
PANTHER version 10: expanded protein families and functions, and analysis tools
-
Mi, H., Poudel, S., Muruganujan, A., Casagrande, J.T., Thomas, P.D., PANTHER version 10: expanded protein families and functions, and analysis tools. Nucleic Acids Res. 44:D1 (2016), D336–D342.
-
(2016)
Nucleic Acids Res.
, vol.44
, Issue.D1
, pp. D336-D342
-
-
Mi, H.1
Poudel, S.2
Muruganujan, A.3
Casagrande, J.T.4
Thomas, P.D.5
-
71
-
-
33645507429
-
M-Coffee: combining multiple sequence alignment methods with T-Coffee
-
Wallace, I.M., O'Sullivan, O., Higgins, D.G., Notredame, C., M-Coffee: combining multiple sequence alignment methods with T-Coffee. Nucleic Acids Res. 34:6 (2006), 1692–1699.
-
(2006)
Nucleic Acids Res.
, vol.34
, Issue.6
, pp. 1692-1699
-
-
Wallace, I.M.1
O'Sullivan, O.2
Higgins, D.G.3
Notredame, C.4
-
72
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
Katoh, K., Standley, D.M., MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30:4 (2013), 772–780.
-
(2013)
Mol. Biol. Evol.
, vol.30
, Issue.4
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
73
-
-
84976870685
-
Ensembl 2016
-
Yates, A., Akanni, W., Amode, M.R., Barrell, D., Billis, K., Carvalho-Silva, D., Cummins, C., Clapham, P., Fitzgerald, S., Gil, L., Giron, C.G., Gordon, L., Hourlier, T., Hunt, S.E., Janacek, S.H., Johnson, N., Juettemann, T., Keenan, S., Lavidas, I., Martin, F.J., Maurel, T., McLaren, W., Murphy, D.N., Nag, R., Nuhn, M., Parker, A., Patricio, M., Pignatelli, M., Rahtz, M., Riat, H.S., Sheppard, D., Taylor, K., Thormann, A., Vullo, A., Wilder, S.P., Zadissa, A., Birney, E., Harrow, J., Muffato, M., Perry, E., Ruffier, M., Spudich, G., Trevanion, S.J., Cunningham, F., Aken, B.L., Zerbino, D.R., Flicek, P., Ensembl 2016. Nucleic Acids Res. 44:D1 (2016), D710–D716.
-
(2016)
Nucleic Acids Res.
, vol.44
, Issue.D1
, pp. D710-D716
-
-
Yates, A.1
Akanni, W.2
Amode, M.R.3
Barrell, D.4
Billis, K.5
Carvalho-Silva, D.6
Cummins, C.7
Clapham, P.8
Fitzgerald, S.9
Gil, L.10
Giron, C.G.11
Gordon, L.12
Hourlier, T.13
Hunt, S.E.14
Janacek, S.H.15
Johnson, N.16
Juettemann, T.17
Keenan, S.18
Lavidas, I.19
Martin, F.J.20
Maurel, T.21
McLaren, W.22
Murphy, D.N.23
Nag, R.24
Nuhn, M.25
Parker, A.26
Patricio, M.27
Pignatelli, M.28
Rahtz, M.29
Riat, H.S.30
Sheppard, D.31
Taylor, K.32
Thormann, A.33
Vullo, A.34
Wilder, S.P.35
Zadissa, A.36
Birney, E.37
Harrow, J.38
Muffato, M.39
Perry, E.40
Ruffier, M.41
Spudich, G.42
Trevanion, S.J.43
Cunningham, F.44
Aken, B.L.45
Zerbino, D.R.46
Flicek, P.47
more..
-
74
-
-
2442666425
-
The Ensembl core software libraries
-
Stabenau, A., McVicker, G., Melsopp, C., Proctor, G., Clamp, M., Birney, E., The Ensembl core software libraries. Genome Res. 14:5 (2004), 929–933.
-
(2004)
Genome Res.
, vol.14
, Issue.5
, pp. 929-933
-
-
Stabenau, A.1
McVicker, G.2
Melsopp, C.3
Proctor, G.4
Clamp, M.5
Birney, E.6
-
75
-
-
2442689013
-
The Ensembl analysis pipeline
-
Potter, S.C., Clarke, L., Curwen, V., Keenan, S., Mongin, E., Searle, S.M., Stabenau, A., Storey, R., Clamp, M., The Ensembl analysis pipeline. Genome Res. 14:5 (2004), 934–941.
-
(2004)
Genome Res.
, vol.14
, Issue.5
, pp. 934-941
-
-
Potter, S.C.1
Clarke, L.2
Curwen, V.3
Keenan, S.4
Mongin, E.5
Searle, S.M.6
Stabenau, A.7
Storey, R.8
Clamp, M.9
-
76
-
-
77953983801
-
eHive: an artificial intelligence workflow system for genomic analysis
-
Severin, J., Beal, K., Vilella, A.J., Fitzgerald, S., Schuster, M., Gordon, L., Ureta-Vidal, A., Flicek, P., Herrero, J., eHive: an artificial intelligence workflow system for genomic analysis. BMC Bioinf., 11, 2010, 240.
-
(2010)
BMC Bioinf.
, vol.11
, pp. 240
-
-
Severin, J.1
Beal, K.2
Vilella, A.J.3
Fitzgerald, S.4
Schuster, M.5
Gordon, L.6
Ureta-Vidal, A.7
Flicek, P.8
Herrero, J.9
-
77
-
-
34249848751
-
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
-
Parra, G., Bradnam, K., Korf, I., CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23:9 (2007), 1061–1067.
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
78
-
-
84940907209
-
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
-
Simao, F.A., Waterhouse, R.M., Ioannidis, P., Kriventseva, E.V., Zdobnov, E.M., BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31:19 (2015), 3210–3212.
-
(2015)
Bioinformatics
, vol.31
, Issue.19
, pp. 3210-3212
-
-
Simao, F.A.1
Waterhouse, R.M.2
Ioannidis, P.3
Kriventseva, E.V.4
Zdobnov, E.M.5
-
79
-
-
84996530203
-
Lepbase: the Lepidopteran genome database
-
Challis, R.J., Kumar, S., Dasmahapatra, K.K.K., Jiggins, C.D., Blaxter, M., Lepbase: the Lepidopteran genome database. bioRxiv, 2016.
-
(2016)
bioRxiv
-
-
Challis, R.J.1
Kumar, S.2
Dasmahapatra, K.K.K.3
Jiggins, C.D.4
Blaxter, M.5
-
80
-
-
61649083057
-
BioMart—biological queries made easy
-
Smedley, D., Haider, S., Ballester, B., Holland, R., London, D., Thorisson, G., Kasprzyk, A., BioMart—biological queries made easy. BMC Genomics, 10, 2009, 22.
-
(2009)
BMC Genomics
, vol.10
, pp. 22
-
-
Smedley, D.1
Haider, S.2
Ballester, B.3
Holland, R.4
London, D.5
Thorisson, G.6
Kasprzyk, A.7
-
81
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E.L., Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305:3 (2001), 567–580.
-
(2001)
J. Mol. Biol.
, vol.305
, Issue.3
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
82
-
-
84973338712
-
The Ensembl variant effect predictor
-
McLaren, W., Gil, L., Hunt, S.E., Riat, H.S., Ritchie, G.R., Thormann, A., Flicek, P., Cunningham, F., The Ensembl variant effect predictor. Genome Biol., 17(1), 2016, 122.
-
(2016)
Genome Biol.
, vol.17
, Issue.1
, pp. 122
-
-
McLaren, W.1
Gil, L.2
Hunt, S.E.3
Riat, H.S.4
Ritchie, G.R.5
Thormann, A.6
Flicek, P.7
Cunningham, F.8
-
83
-
-
84922371409
-
The Ensembl REST API: ensembl data for any language
-
Yates, A., Beal, K., Keenan, S., McLaren, W., Pignatelli, M., Ritchie, G.R., Ruffier, M., Taylor, K., Vullo, A., Flicek, P., The Ensembl REST API: ensembl data for any language. Bioinformatics 31:1 (2015), 143–145.
-
(2015)
Bioinformatics
, vol.31
, Issue.1
, pp. 143-145
-
-
Yates, A.1
Beal, K.2
Keenan, S.3
McLaren, W.4
Pignatelli, M.5
Ritchie, G.R.6
Ruffier, M.7
Taylor, K.8
Vullo, A.9
Flicek, P.10
-
84
-
-
84958260057
-
Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection
-
Crellen, T., Allan, F., David, S., Durrant, C., Huckvale, T., Holroyd, N., Emery, A.M., Rollinson, D., Aanensen, D.M., Berriman, M., Webster, J.P., Cotton, J.A., Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection. Sci. Rep., 6, 2016, 20954.
-
(2016)
Sci. Rep.
, vol.6
, pp. 20954
-
-
Crellen, T.1
Allan, F.2
David, S.3
Durrant, C.4
Huckvale, T.5
Holroyd, N.6
Emery, A.M.7
Rollinson, D.8
Aanensen, D.M.9
Berriman, M.10
Webster, J.P.11
Cotton, J.A.12
-
85
-
-
84965026430
-
The european bioinformatics institute in 2016: data growth and integration
-
Cook, C.E., Bergman, M.T., Finn, R.D., Cochrane, G., Birney, E., Apweiler, R., The european bioinformatics institute in 2016: data growth and integration. Nucleic Acids Res. 44:D1 (2016), D20–D26.
-
(2016)
Nucleic Acids Res.
, vol.44
, Issue.D1
, pp. D20-D26
-
-
Cook, C.E.1
Bergman, M.T.2
Finn, R.D.3
Cochrane, G.4
Birney, E.5
Apweiler, R.6
-
86
-
-
84891814834
-
Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC genome browser
-
Raney, B.J., Dreszer, T.R., Barber, G.P., Clawson, H., Fujita, P.A., Wang, T., Nguyen, N., Paten, B., Zweig, A.S., Karolchik, D., Kent, W.J., Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC genome browser. Bioinformatics 30:7 (2014), 1003–1005.
-
(2014)
Bioinformatics
, vol.30
, Issue.7
, pp. 1003-1005
-
-
Raney, B.J.1
Dreszer, T.R.2
Barber, G.P.3
Clawson, H.4
Fujita, P.A.5
Wang, T.6
Nguyen, N.7
Paten, B.8
Zweig, A.S.9
Karolchik, D.10
Kent, W.J.11
-
87
-
-
84891762026
-
The ChEMBL bioactivity database: an update
-
Database issue
-
Bento, A.P., Gaulton, A., Hersey, A., Bellis, L.J., Chambers, J., Davies, M., Kruger, F.A., Light, Y., Mak, L., McGlinchey, S., Nowotka, M., Papadatos, G., Santos, R., Overington, J.P., The ChEMBL bioactivity database: an update. Nucleic Acids Res. 42 (2014), D1083–D1090 Database issue.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D1083-D1090
-
-
Bento, A.P.1
Gaulton, A.2
Hersey, A.3
Bellis, L.J.4
Chambers, J.5
Davies, M.6
Kruger, F.A.7
Light, Y.8
Mak, L.9
McGlinchey, S.10
Nowotka, M.11
Papadatos, G.12
Santos, R.13
Overington, J.P.14
|