메뉴 건너뛰기




Volumn 13, Issue 2, 2017, Pages

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; DIRECT INFUSION MASS SPECTROMETRY; IMAGING MASS SPECTROMETRY; INFORMATION PROCESSING; LETTER; LIQUID CHROMATOGRAPHY; MASS FRAGMENTOGRAPHY; METABOLOMICS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; QUESTIONNAIRE;

EID: 85007135362     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-016-1147-x     Document Type: Letter
Times cited : (67)

References (13)
  • 1
    • 84991526698 scopus 로고    scopus 로고
    • Galaxy-M: A Galaxy workflow for processing and analyzing direct infusion and liquid chromatography mass spectrometry-based metabolomics data
    • PID: 26913198
    • Davidson, R. L., Weber, R. J. M., Liu, H., Sharma-Oates, A., & Viant, M. R. (2016). Galaxy-M: A Galaxy workflow for processing and analyzing direct infusion and liquid chromatography mass spectrometry-based metabolomics data. GigaScience, 5, 10. doi:10.1186/s13742-016-0115-8.
    • (2016) GigaScience , vol.5 , pp. 10
    • Davidson, R.L.1    Weber, R.J.M.2    Liu, H.3    Sharma-Oates, A.4    Viant, M.R.5
  • 2
    • 84874345577 scopus 로고    scopus 로고
    • Mass appeal: Metabolite identification in mass spectrometry-focused untargeted metabolomics
    • Dunn, W. B., Erban, A., Weber, R. J. M., Creek, D. J., Brown, M., Breitling, R., et al. (2012). Mass appeal: Metabolite identification in mass spectrometry-focused untargeted metabolomics. Metabolomics, 9(1), 44–66. doi:10.1007/s11306-012-0434-4.
    • (2012) Metabolomics , vol.9 , Issue.1 , pp. 44-66
    • Dunn, W.B.1    Erban, A.2    Weber, R.J.M.3    Creek, D.J.4    Brown, M.5    Breitling, R.6
  • 3
    • 84938788126 scopus 로고    scopus 로고
    • Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics
    • COI: 1:CAS:528:DC%2BC28XhtFyltLfE, PID: 25527831
    • Giacomoni, F., Le Corguillé, G., Monsoor, M., Landi, M., Pericard, P., Pétéra, M., et al. (2015). Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics, 31(9), 1493–1495. doi:10.1093/bioinformatics/btu813.
    • (2015) Bioinformatics , vol.31 , Issue.9 , pp. 1493-1495
    • Giacomoni, F.1    Le Corguillé, G.2    Monsoor, M.3    Landi, M.4    Pericard, P.5    Pétéra, M.6
  • 4
    • 34748839546 scopus 로고    scopus 로고
    • Proposed minimum reporting standards for data analysis in metabolomics
    • COI: 1:CAS:528:DC%2BD2sXhtFOntbvF
    • Goodacre, R., Broadhurst, D., Smilde, A. K., Kristal, B. S., David Baker, J., Beger, R., et al. (2007). Proposed minimum reporting standards for data analysis in metabolomics. Metabolomics, 3(3), 231–241. doi:10.1007/s11306-007-0081-3.
    • (2007) Metabolomics , vol.3 , Issue.3 , pp. 231-241
    • Goodacre, R.1    Broadhurst, D.2    Smilde, A.K.3    Kristal, B.S.4    David Baker, J.5    Beger, R.6
  • 5
    • 84876560030 scopus 로고    scopus 로고
    • MetaboLights: An open-access general-purpose repository for metabolomics studies and associated meta-data
    • PID: 23109552
    • Haug, K., Salek, R. M., Conesa, P., Hastings, J., de Matos, P., Rijnbeek, M., et al. (2012). MetaboLights: An open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Research. doi:10.1093/nar/gks1004.
    • (2012) Nucleic Acids Research
    • Haug, K.1    Salek, R.M.2    Conesa, P.3    Hastings, J.4    de Matos, P.5    Rijnbeek, M.6
  • 7
    • 78651082595 scopus 로고    scopus 로고
    • MzML: A community standard for mass spectrometry data. Molecular & Cellular Proteomics: MCP, 10(1)
    • Martens, L., Chambers, M., Sturm, M., Kessner, D., Levander, F., Shofstahl, J., et al. (2011). MzML: A community standard for mass spectrometry data. Molecular & Cellular Proteomics: MCP, 10(1), R110–R000133. https://www.mcponline.org/content/10/1/R110.000133.full.
    • (2011) R110–R000133
    • Martens, L.1    Chambers, M.2    Sturm, M.3    Kessner, D.4    Levander, F.5    Shofstahl, J.6
  • 8
    • 84969667838 scopus 로고    scopus 로고
    • Where imaging mass spectrometry stands: Here are the numbers
    • Palmer, A., Trede, D., & Alexandrov, T. (2016). Where imaging mass spectrometry stands: Here are the numbers. Metabolomics, 12(6), 107. doi:10.1007/s11306-016-1047-0.
    • (2016) Metabolomics , vol.12 , Issue.6 , pp. 107
    • Palmer, A.1    Trede, D.2    Alexandrov, T.3
  • 9
    • 84947561473 scopus 로고    scopus 로고
    • Data standards can boost metabolomics research, and if there is a will, there is a way
    • PID: 26612985
    • Rocca-Serra, P., Salek, R. M., Arita, M., Correa, E., Dayalan, S., Gonzalez-Beltran, A., et al. (2016). Data standards can boost metabolomics research, and if there is a will, there is a way. Metabolomics, 12(1), 14. doi:10.1007/s11306-015-0879-3.
    • (2016) Metabolomics , vol.12 , Issue.1 , pp. 14
    • Rocca-Serra, P.1    Salek, R.M.2    Arita, M.3    Correa, E.4    Dayalan, S.5    Gonzalez-Beltran, A.6
  • 10
    • 84944278465 scopus 로고    scopus 로고
    • Coordination of standards in Metabolomics (COSMOS): facilitating integrated metabolomics data access
    • COI: 1:CAS:528:DC%2BC2MXovFOgsL4%3D, PID: 26491418
    • Salek, R. M., Neumann, S., Schober, D., Hummel, J., Billiau, K., Kopka, J., et al. (2015). Coordination of standards in Metabolomics (COSMOS): facilitating integrated metabolomics data access. Metabolomics, 11(6), 1587–1597. doi:10.1007/s11306-015-0810-y.
    • (2015) Metabolomics , vol.11 , Issue.6 , pp. 1587-1597
    • Salek, R.M.1    Neumann, S.2    Schober, D.3    Hummel, J.4    Billiau, K.5    Kopka, J.6
  • 11
    • 84976887093 scopus 로고    scopus 로고
    • Metabolomics workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
    • PID: 26467476
    • Sud, M., Fahy, E., Cotter, D., Azam, K., Vadivelu, I., Burant, C., et al. (2016). Metabolomics workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. Nucleic Acids Research, 44(D1), D463–D470. doi:10.1093/nar/gkv1042.
    • (2016) Nucleic Acids Research , vol.44 , Issue.D1 , pp. D463-D470
    • Sud, M.1    Fahy, E.2    Cotter, D.3    Azam, K.4    Vadivelu, I.5    Burant, C.6
  • 12
    • 34748888866 scopus 로고    scopus 로고
    • Proposed minimum reporting standards for chemical analysis
    • COI: 1:CAS:528:DC%2BD2sXhtFOntbvL, PID: 24039616
    • Sumner, L. W., Amberg, A., Barrett, D., Beale, M. H., Beger, R., Daykin, C. A., et al. (2007). Proposed minimum reporting standards for chemical analysis. Metabolomics, 3(3), 211–221. doi:10.1007/s11306-007-0082-2.
    • (2007) Metabolomics , vol.3 , Issue.3 , pp. 211-221
    • Sumner, L.W.1    Amberg, A.2    Barrett, D.3    Beale, M.H.4    Beger, R.5    Daykin, C.A.6
  • 13
    • 84931566798 scopus 로고    scopus 로고
    • Training needs in metabolomics
    • COI: 1:CAS:528:DC%2BC2MXpt1Sktbo%3D, PID: 26109924
    • Weber, R. J. M., Winder, C. L., Larcombe, L. D., Dunn, W. B., & Viant, M. R. (2015). Training needs in metabolomics. Metabolomics, 11(4), 784–786. doi:10.1007/s11306-015-0815-6.
    • (2015) Metabolomics , vol.11 , Issue.4 , pp. 784-786
    • Weber, R.J.M.1    Winder, C.L.2    Larcombe, L.D.3    Dunn, W.B.4    Viant, M.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.