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Volumn 31, Issue 9, 2015, Pages 1493-1495

Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BIOLOGY; COMPUTER PROGRAM; METABOLOMICS; PROCEDURES; WORKFLOW;

EID: 84938788126     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu813     Document Type: Article
Times cited : (339)

References (17)
  • 1
    • 78751518143 scopus 로고    scopus 로고
    • Virtual research environment collaborative landscape study
    • Carusi, A. and Reimer, T. (2010) Virtual Research Environment Collaborative Landscape Study. JISC, Bristol, 106 pp.
    • (2010) JISC, Bristol
    • Carusi, A.1    Reimer, T.2
  • 2
    • 77954253893 scopus 로고    scopus 로고
    • MetExplore: A web server to link metabolomic experiments and genome-scale metabolic networks
    • Cottret, L. et al. (2010) MetExplore: A web server to link metabolomic experiments and genome-scale metabolic networks. Nucleic Acids Res., 38, W132-W137.
    • (2010) Nucleic Acids Res. , vol.38 , pp. W132-W137
    • Cottret, L.1
  • 3
    • 48949104656 scopus 로고    scopus 로고
    • MzML: A single, unifying data format for mass spectrometer output
    • Deutsch, E. (2008) mzML: A single, unifying data format for mass spectrometer output. Proteomics, 8, 2776-2777.
    • (2008) Proteomics , vol.8 , pp. 2776-2777
    • Deutsch, E.1
  • 4
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks, J. et al. (2010) Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
    • (2010) Genome Biol. , vol.11 , pp. R86
    • Goecks, J.1
  • 5
    • 43749087841 scopus 로고    scopus 로고
    • Human metabolic phenotype diversity and its association with diet and blood pressure
    • Holmes, E. et al. (2008) Human metabolic phenotype diversity and its association with diet and blood pressure. Nature, 453, 396-400.
    • (2008) Nature , vol.453 , pp. 396-400
    • Holmes, E.1
  • 6
    • 54949129419 scopus 로고    scopus 로고
    • ProteoWizard: Open source software for rapid proteomics tools development
    • Kessner, D. et al. (2008) ProteoWizard: open source software for rapid proteomics tools development. Bioinformatics, 24, 2534-2536.
    • (2008) Bioinformatics , vol.24 , pp. 2534-2536
    • Kessner, D.1
  • 7
    • 34247163207 scopus 로고    scopus 로고
    • Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry
    • Kind, T. and Fiehn, O. (2007) Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC Bioinformatics, 8, 105.
    • (2007) BMC Bioinformatics , vol.8 , pp. 105
    • Kind, T.1    Fiehn, O.2
  • 8
    • 84855402302 scopus 로고    scopus 로고
    • CAMERA: An integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets
    • Kuhl, C. et al. (2012) CAMERA: An integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets. Anal. Chem., 84, 283-289.
    • (2012) Anal. Chem. , vol.84 , pp. 283-289
    • Kuhl, C.1
  • 9
    • 56649102388 scopus 로고    scopus 로고
    • MeltDB: A software platform for the analysis and integration of metabolomics experiment data
    • Neuweger, H. et al. (2008) MeltDB: A software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24, 2726-2732.
    • (2008) Bioinformatics , vol.24 , pp. 2726-2732
    • Neuweger, H.1
  • 10
    • 8344284323 scopus 로고    scopus 로고
    • A common open representation of mass spectrometry data and its application to proteomics research
    • Pedrioli, P.G.A. et al. (2004) A common open representation of mass spectrometry data and its application to proteomics research. Nat. Biotechnol., 22, 1459-1466.
    • (2004) Nat. Biotechnol. , vol.22 , pp. 1459-1466
    • Pedrioli, P.G.A.1
  • 11
    • 84864632392 scopus 로고    scopus 로고
    • Annotation of the human adult urinary metabolome and metabolite identification using ultra high performance liquid chromatography coupled to a linear quadrupole ion trap-orbitrap mass spectrometer
    • Roux, A. et al. (2012) Annotation of the human adult urinary metabolome and metabolite identification using ultra high performance liquid chromatography coupled to a linear quadrupole ion trap-orbitrap mass spectrometer. Anal. Chem., 84, 6429-6437.
    • (2012) Anal. Chem. , vol.84 , pp. 6429-6437
    • Roux, A.1
  • 12
    • 32444446805 scopus 로고    scopus 로고
    • XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
    • Smith, C.A. et al. (2006) XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem., 78, 779-787.
    • (2006) Anal. Chem. , vol.78 , pp. 779-787
    • Smith, C.A.1
  • 13
    • 84878882380 scopus 로고    scopus 로고
    • Novel algorithms and the benefits of comparative validation
    • Smith, R. et al. (2013) Novel algorithms and the benefits of comparative validation. Bioinformatics, 29, 1583-1585.
    • (2013) Bioinformatics , vol.29 , pp. 1583-1585
    • Smith, R.1
  • 14
    • 84861915827 scopus 로고    scopus 로고
    • XCMS online: A web-based platform to process untargeted metabolomic data
    • Tautenhahn, R. et al. (2012) XCMS online: A web-based platform to process untargeted metabolomic data. Anal. Chem., 84, 5035-5039.
    • (2012) Anal. Chem. , vol.84 , pp. 5035-5039
    • Tautenhahn, R.1
  • 15
    • 0036083139 scopus 로고    scopus 로고
    • Orthogonal projection to latent structures (O-PLS)
    • Trygg, J. and Wold, S. (2002) Orthogonal projection to latent structures (O-PLS). J. Chemometr., 16, 119-128.
    • (2002) J. Chemometr. , vol.16 , pp. 119-128
    • Trygg, J.1    Wold, S.2
  • 16
    • 70449354965 scopus 로고    scopus 로고
    • Analytical error reduction using single point calibration for accurate and precise metabolomic phenotyping
    • van der Kloet, F.M. et al. (2009) Analytical error reduction using single point calibration for accurate and precise metabolomic phenotyping. J. Proteome Res., 8, 5132-5141.
    • (2009) J. Proteome Res. , vol.8 , pp. 5132-5141
    • Van Der Kloet, F.M.1
  • 17
    • 67849106535 scopus 로고    scopus 로고
    • MetaboAnalyst: A web server for metabolomic data analysis and interpretation
    • Xia, J. et al. (2009) MetaboAnalyst: A web server for metabolomic data analysis and interpretation. Nucleic Acids Res., 37, W652-W660.
    • (2009) Nucleic Acids Res. , vol.37 , pp. W652-W660
    • Xia, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.