메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Cpf1 Is A Versatile Tool for CRISPR Genome Editing Across Diverse Species of Cyanobacteria

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CARBON DIOXIDE; ENDONUCLEASE; NITROGENASE; PHOTOPROTEIN; YELLOW FLUORESCENT PROTEIN, BACTERIA;

EID: 85006870225     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep39681     Document Type: Article
Times cited : (233)

References (39)
  • 1
    • 84869757991 scopus 로고    scopus 로고
    • 2 to ethylene in recombinant cyanobacterium synechocystis 6803
    • 2 to ethylene in recombinant cyanobacterium Synechocystis 6803. Energy & Environ. Sci. 5, 8998-9006 (2012).
    • (2012) Energy & Environ. Sci. , vol.5 , pp. 8998-9006
    • Ungerer, J.1
  • 2
    • 70449336249 scopus 로고    scopus 로고
    • Engineering a platform for photosynthetic isoprene production in cyanobacteria, using synechocystis as the model organism
    • Lindberg, P., Park, S. & Melis, A. Engineering a platform for photosynthetic isoprene production in cyanobacteria, using Synechocystis as the model organism. Metab. Eng. 12, 70-79 (2010).
    • (2010) Metab. Eng. , vol.12 , pp. 70-79
    • Lindberg, P.1    Park, S.2    Melis, A.3
  • 4
    • 84963766600 scopus 로고    scopus 로고
    • The potential of synechococcus elongatus UTEX 2973 for sugar feedstock production
    • Song, K., Tan, X., Liang, Y. & Lu, X. The potential of Synechococcus elongatus UTEX 2973 for sugar feedstock production. Appl. Environ. Microbiol. 100, 1-11 (2016).
    • (2016) Appl. Environ. Microbiol. , vol.100 , pp. 1-11
    • Song, K.1    Tan, X.2    Liang, Y.3    Lu, X.4
  • 5
    • 84877059594 scopus 로고    scopus 로고
    • Engineering cyanobacteria to improve photosynthetic production of alka(e)nes
    • Wang, W., Liu, X. & Lu, X. Engineering cyanobacteria to improve photosynthetic production of alka(e)nes. Biotechnol. Biofuels. 6, 1-9 (2013).
    • (2013) Biotechnol. Biofuels. , vol.6 , pp. 1-9
    • Wang, W.1    Liu, X.2    Lu, X.3
  • 6
    • 78651475398 scopus 로고    scopus 로고
    • High rates of photobiological H2 production by a cyanobacterium under aerobic conditions
    • Bandyopadhyay, A., Stöckel, J., Min, H., Sherman, L. A. & Pakrasi, H. B. High rates of photobiological H2 production by a cyanobacterium under aerobic conditions. Nat. Commun. 1, 139 (2010).
    • (2010) Nat. Commun. , vol.1 , pp. 139
    • Bandyopadhyay, A.1    Stöckel, J.2    Min, H.3    Sherman, L.A.4    Pakrasi, H.B.5
  • 7
    • 84922064018 scopus 로고    scopus 로고
    • Terpenoids and their biosynthesis in cyanobacteria
    • Pattanaik, B. & Lindberg, P. Terpenoids and Their Biosynthesis in Cyanobacteria. Life 5, 269-293 (2015).
    • (2015) Life , vol.5 , pp. 269-293
    • Pattanaik, B.1    Lindberg, P.2
  • 8
    • 0000169764 scopus 로고    scopus 로고
    • Polyhydroxybutyrate production from carbon dioxide by cyanobacteria
    • Miyake, M. et al. Polyhydroxybutyrate production from carbon dioxide by cyanobacteria. Appl. Biochem. and Biotechnol. 84, 991-1002 (2000).
    • (2000) Appl. Biochem. and Biotechnol. , vol.84 , pp. 991-1002
    • Miyake, M.1
  • 9
    • 79959767039 scopus 로고    scopus 로고
    • Cyanobacteria: An emerging source for drug discovery
    • Singh, R. K., Tiwari, S. P., Rai, A. K. & Mohapatra, T. M. Cyanobacteria: an emerging source for drug discovery. J. Antibiot. 64, 401-412 (2011).
    • (2011) J. Antibiot. , vol.64 , pp. 401-412
    • Singh, R.K.1    Tiwari, S.P.2    Rai, A.K.3    Mohapatra, T.M.4
  • 10
    • 77956238595 scopus 로고    scopus 로고
    • Vitamin B12 excretion by cultures of the marine cyanobacteria crocosphaera and synechococcus
    • Bonnet, S. et al. Vitamin B12 excretion by cultures of the marine cyanobacteria Crocosphaera and Synechococcus. Limnol. and Oceanog. 55, 1959-1964 (2010).
    • (2010) Limnol. and Oceanog. , vol.55 , pp. 1959-1964
    • Bonnet, S.1
  • 11
    • 84900314611 scopus 로고    scopus 로고
    • CRISPR-cas systems for editing, regulating and targeting genomes
    • Sander, J. D. & Joung, J. K. CRISPR-Cas systems for editing, regulating and targeting genomes. Nat. Biotech. 32, 347-355 (2014).
    • (2014) Nat. Biotech. , vol.32 , pp. 347-355
    • Sander, J.D.1    Joung, J.K.2
  • 12
    • 84920262090 scopus 로고    scopus 로고
    • The CRISPR/Cas9 system for plant genome editing and beyond
    • Bortesi, L. & Fischer, R. The CRISPR/Cas9 system for plant genome editing and beyond. Biotechnol. Adv. 33, 41-52 (2015).
    • (2015) Biotechnol. Adv. , vol.33 , pp. 41-52
    • Bortesi, L.1    Fischer, R.2
  • 13
    • 84934947770 scopus 로고    scopus 로고
    • High-efficiency multiplex genome editing of streptomyces species using an engineered CRISPR/Cas system
    • Cobb, R. E., Wang, Y. & Zhao, H. High-Efficiency Multiplex Genome Editing of Streptomyces Species Using an Engineered CRISPR/Cas System. ACS Synth. Biol. 4, 723-728 (2015).
    • (2015) ACS Synth. Biol. , vol.4 , pp. 723-728
    • Cobb, R.E.1    Wang, Y.2    Zhao, H.3
  • 14
    • 84925355124 scopus 로고    scopus 로고
    • Multigene editing in the Escherichia coli genome via the CRISPR-cas9 system
    • Jiang, Y. et al. Multigene Editing in the Escherichia coli Genome via the CRISPR-Cas9 System. Appl. Environ. Microbiol. 81, 2506-2514 (2015).
    • (2015) Appl. Environ. Microbiol. , vol.81 , pp. 2506-2514
    • Jiang, Y.1
  • 15
    • 84978153360 scopus 로고    scopus 로고
    • CRISPR/Cas9 mediated targeted mutagenesis of the fast growing cyanobacterium synechococcus elongatus UTEX 2973
    • Wendt, K. E., Ungerer, J., Cobb, R. E., Zhao, H. & Pakrasi, H. B. CRISPR/Cas9 mediated targeted mutagenesis of the fast growing cyanobacterium Synechococcus elongatus UTEX 2973. Microb. Cell Fact. 15, 1-8 (2016).
    • (2016) Microb. Cell Fact. , vol.15 , pp. 1-8
    • Wendt, K.E.1    Ungerer, J.2    Cobb, R.E.3    Zhao, H.4    Pakrasi, H.B.5
  • 16
    • 84975678715 scopus 로고    scopus 로고
    • Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-cas system
    • Zetsche, B. et al. Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System. Cell. 163, 759-771 (2015).
    • (2015) Cell. , vol.163 , pp. 759-771
    • Zetsche, B.1
  • 17
    • 84979224039 scopus 로고    scopus 로고
    • Type v CRISPR-cas cpf1 endonuclease employs a unique mechanism for crRNA-mediated target DNA recognition
    • Gao, P., Yang, H., Rajashankar, K. R., Huang, Z. & Patel, D. J. Type V CRISPR-Cas Cpf1 endonuclease employs a unique mechanism for crRNA-mediated target DNA recognition. Cell res. 26, 901-913 (2016).
    • (2016) Cell Res. , vol.26 , pp. 901-913
    • Gao, P.1    Yang, H.2    Rajashankar, K.R.3    Huang, Z.4    Patel, D.J.5
  • 18
    • 84964862130 scopus 로고    scopus 로고
    • The CRISPR-associated DNA-cleaving enzyme cpf1 also processes precursor CRISPR RNA
    • Fonfara, I., Richter, H., Bratovič, M., Le Rhun, A. & Charpentier, E. The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA. Nature. 53.2, 517-521 (2016).
    • (2016) Nature. , vol.53 , Issue.2 , pp. 517-521
    • Fonfara, I.1    Richter, H.2    Bratovič, M.3    Le Rhun, A.4    Charpentier, E.5
  • 19
    • 84963973892 scopus 로고    scopus 로고
    • Crystal structure of cpf1 in complex with guide RNA and target DNA
    • Yamano, T. et al. Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA. Cell. 165, 949-962 (2016).
    • (2016) Cell. , vol.165 , pp. 949-962
    • Yamano, T.1
  • 20
    • 84981347695 scopus 로고    scopus 로고
    • Genome-wide specificities of CRISPR-cas cpf1 nucleases in human cells
    • Kleinstiver, B. P. et al. Genome-wide specificities of CRISPR-Cas Cpf1 nucleases in human cells. Nat. Biotech. 34 (2016).
    • (2016) Nat. Biotech. , vol.34
    • Kleinstiver, B.P.1
  • 21
    • 0000340883 scopus 로고    scopus 로고
    • Vectors for the complementation analysis of cyanobacterial mutants
    • Zinchenko, V. P. I., Melnik, V. & Shestakov, S. Vectors for the complementation analysis of cyanobacterial mutants. Genetika. 35, 228-232 (1999).
    • (1999) Genetika. , vol.35 , pp. 228-232
    • Zinchenko, V.P.I.1    Melnik, V.2    Shestakov, S.3
  • 23
    • 0001216148 scopus 로고
    • Resistance to the photosystem II herbicide diuron is dominant to sensitivity in the cyanobacterium synechococcus sp. PCC7942
    • Brusslan, J. & Haselkorn, R. Resistance to the photosystem II herbicide diuron is dominant to sensitivity in the cyanobacterium Synechococcus sp. PCC7942. EMBO J. 8, 1237-1245 (1989).
    • (1989) EMBO J. , vol.8 , pp. 1237-1245
    • Brusslan, J.1    Haselkorn, R.2
  • 24
    • 0028204187 scopus 로고
    • A small polypeptide triggers complete degradation of light-harvesting phycobiliproteins in nutrientdeprived cyanobacteria
    • Collier, J. L. & Grossman, A. R. A small polypeptide triggers complete degradation of light-harvesting phycobiliproteins in nutrientdeprived cyanobacteria. EMBO J. 13, 1039-1047 (1994).
    • (1994) EMBO J. , vol.13 , pp. 1039-1047
    • Collier, J.L.1    Grossman, A.R.2
  • 25
    • 0036042190 scopus 로고    scopus 로고
    • Characterization of synechocystis sp. Strain PCC 6803 and Δ nbl mutants under nitrogen-deficient conditions
    • Li, H. & Sherman, L. A. Characterization of Synechocystis sp. strain PCC 6803 and Δ nbl mutants under nitrogen-deficient conditions. Arch. of Microbiol. 178, 256-266 (2002).
    • (2002) Arch. of Microbiol. , vol.178 , pp. 256-266
    • Li, H.1    Sherman, L.A.2
  • 27
    • 84964939442 scopus 로고    scopus 로고
    • The ploidy level of synechocystis sp. PCC 6803 is highly variable and is influenced by growth phase and by chemical and physical external parameters
    • Zerulla, K., Ludt, K. & Soppa, J. The ploidy level of Synechocystis sp. PCC 6803 is highly variable and is influenced by growth phase and by chemical and physical external parameters. Microbiol. 162, 730-739 (2016).
    • (2016) Microbiol , vol.162 , pp. 730-739
    • Zerulla, K.1    Ludt, K.2    Soppa, J.3
  • 28
    • 77958616904 scopus 로고    scopus 로고
    • Site-directed mutagenesis of the anabaena sp. Strain PCC 7120 nitrogenase active site to increase photobiological hydrogen production
    • Masukawa, H., Inoue, K., Sakurai, H., Wolk, C. P. & Hausinger, R. P. Site-Directed Mutagenesis of the Anabaena sp. Strain PCC 7120 Nitrogenase Active Site To Increase Photobiological Hydrogen Production. Appl. Environ. Microbiol. 76, 6741-6750 (2010).
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 6741-6750
    • Masukawa, H.1    Inoue, K.2    Sakurai, H.3    Wolk, C.P.4    Hausinger, R.P.5
  • 29
    • 20444375859 scopus 로고    scopus 로고
    • Structure and functional role of supercomplexes of IsiA and photosystem I in cyanobacterial photosynthesis
    • Kouřil, R. et al. Structure and functional role of supercomplexes of IsiA and Photosystem I in cyanobacterial photosynthesis. FEBS Lett. 579, 3253-3257 (2005).
    • (2005) FEBS Lett. , vol.579 , pp. 3253-3257
    • Kouřil, R.1
  • 30
    • 77956574405 scopus 로고    scopus 로고
    • RSF1010-like plasmids in australian salmonella enterica serovar typhimurium and origin of their sul2-strA-strB antibiotic resistance gene cluster
    • Yau, S., Liu, X., Djordjevic, S. P. & Hall, R. M. RSF1010-Like Plasmids in Australian Salmonella enterica Serovar Typhimurium and Origin of Their sul2-strA-strB Antibiotic Resistance Gene Cluster. Microb. Drug Resist. 16, 249-252 (2010).
    • (2010) Microb. Drug Resist. , vol.16 , pp. 249-252
    • Yau, S.1    Liu, X.2    Djordjevic, S.P.3    Hall, R.M.4
  • 31
    • 0017878716 scopus 로고
    • RSF1010 plasmid as a potentially useful vector in pseudomonas species
    • Nagahari, K. & Sakaguchi, K. RSF1010 plasmid as a potentially useful vector in Pseudomonas species. J. Bacteriol. 133, 1527-1529 (1978).
    • (1978) J. Bacteriol. , vol.133 , pp. 1527-1529
    • Nagahari, K.1    Sakaguchi, K.2
  • 32
    • 0025885632 scopus 로고
    • Transfer of plasmid RSF1010 by conjugation from Escherichia coli to streptomyces lividans and mycobacterium smegmatis
    • Gormley, E. P. & Davies, J. Transfer of plasmid RSF1010 by conjugation from Escherichia coli to Streptomyces lividans and Mycobacterium smegmatis. J. Bacteriol. 173, 6705-6708 (1991).
    • (1991) J. Bacteriol. , vol.173 , pp. 6705-6708
    • Gormley, E.P.1    Davies, J.2
  • 34
    • 0025368819 scopus 로고
    • A new family of RSF1010-derived expression and lac-fusion broad-host-range vectors for gramnegative bacteria
    • Labes, M., Pühler, A. & Simon, R. A new family of RSF1010-derived expression and lac-fusion broad-host-range vectors for Gramnegative bacteria. Gene 89, 37-46 (1990).
    • (1990) Gene , vol.89 , pp. 37-46
    • Labes, M.1    Pühler, A.2    Simon, R.3
  • 36
    • 0015076683 scopus 로고
    • Purification and properties of unicellular blue-green algae (order chroococcales)
    • Stanier, R. Y., Kunisawa, R., Mandel, M. & Cohen-Bazire, G. Purification and properties of unicellular blue-green algae (order Chroococcales). Bacteriol. Rev. 35, 171-205 (1971).
    • (1971) Bacteriol. Rev. , vol.35 , pp. 171-205
    • Stanier, R.Y.1    Kunisawa, R.2    Mandel, M.3    Cohen-Bazire, G.4
  • 37
    • 0030941679 scopus 로고    scopus 로고
    • Reduction of conjugal transfer efficiency by three restriction activities of anabaena sp. Strain PCC 7120
    • Elhai, J., Vepritskiy, A., Muro-Pastor, A. M., Flores, E. & Wolk, C. P. Reduction of conjugal transfer efficiency by three restriction activities of Anabaena sp. strain PCC 7120. J. Bacteriol. 179, 1998-2005 (1997).
    • (1997) J. Bacteriol. , vol.179 , pp. 1998-2005
    • Elhai, J.1    Vepritskiy, A.2    Muro-Pastor, A.M.3    Flores, E.4    Wolk, C.P.5
  • 38
    • 0000340883 scopus 로고    scopus 로고
    • Vectors for the complementation analysis of cyanobacterial mutants
    • Zinchenko, V., Piven, I., Melnik, V. & Shestakov, S. Vectors for the complementation analysis of cyanobacterial mutants. Genetika 35 (1999).
    • (1999) Genetika , vol.35
    • Zinchenko, V.1    Piven, I.2    Melnik, V.3    Shestakov, S.4
  • 39
    • 84934947770 scopus 로고    scopus 로고
    • High-efficiency multiplex genome editing of streptomyces species using an engineered CRISPR/Cas system
    • Cobb, R. E., Wang, Y. & Zhao, H. High-efficiency multiplex genome editing of Streptomyces species using an engineered CRISPR/Cas system. ACS Synth. Biol. 4, 723-728 (2015).
    • (2015) ACS Synth. Biol. , vol.4 , pp. 723-728
    • Cobb, R.E.1    Wang, Y.2    Zhao, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.