Uptake and reaction of C. Elegans to environmental RNAs

Non-coding RNAs and Inter-kingdom Communication

Volumn , Issue , 2016, Pages 117-124

  Waqas, Ahmed ^a   Shan, Ge ^a  

^a UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85006380515     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-319-39496-1_7     Document Type: Chapter

References (28)

1. Akay A, Sarkies P, Miska EA (2015) E. coli OxyS non-coding RNA does not trigger RNAi in C. elegans. Sci Rep 5:9597. doi:10.1038/srep09597
2. Castel SE, Martienssen RA (2013) RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat Rev Genet 14(2):100-112. doi:10.1038/nrg3355
3. Dalzell JJ, McVeigh P, Warnock ND, Mitreva M, Bird DM, Abad P, Fleming CC, Day TA, Mousley A, Marks NJ, Maule AG (2011) RNAi effector diversity in nematodes. PLoS Negl Trop Dis 5(6):e1176. doi:10.1371/journal.pntd.0001176
4. Feinberg EH, Hunter CP (2003) Transport of dsRNA into cells by the transmembrane protein SID-1. Science 301(5639):1545-1547. doi:10.1126/science.1087117
5. Fire A, Albertson D, Harrison SW, Moerman DG (1991) Production of antisense RNA leads to effective and specific inhibition of gene expression in C. elegans muscle. Development 113 (2):503-514
6. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391 (6669):806-811. doi:10.1038/35888
7. Fischer SE (2010) Small RNA-mediated gene silencing pathways in C. elegans. Int J Biochem Cell Biol 42(8):1306-1315. doi:10.1016/j.biocel.2010.03.006
8. Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrin-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL (2007) Draft genome of the filarial nematode parasite Brugia malayi. Science 317 (5845):1756-1760. doi: 10.1126/science.1145406
9. Gottesman S, Storz G (2011) Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol 3(12). doi:10.1101/cshperspect.a003798
10. Hinas A, Wright AJ, Hunter CP (2012) SID-5 is an endosome-associated protein required for efficient systemic RNAi in C. elegans. Curr Biol 22(20):1938-1943. doi:10.1016/j.cub.2012.08.020
11. Hu S, Wu J, Chen L, Shan G (2012) Signals from noncoding RNAs: unconventional roles for conventional pol III transcripts. Int J Biochem Cell Biol 44(11):1847-1851. doi:10.1016/j.biocel.2012.07.013
12. Jose AM, Smith JJ, Hunter CP (2009) Export of RNA silencing from C. elegans tissues does not require the RNA channel SID-1. Proc Natl Acad Sci USA 106(7):2283-2288. doi:10.1073/pnas.0809760106
13. Jose AM, Kim YA, Leal-Ekman S, Hunter CP (2012) Conserved tyrosine kinase promotes the import of silencing RNA into Caenorhabditis elegans cells. Proc Natl Acad Sci USA 109 (36):14520-14525. doi: 10.1073/pnas.1201153109
14. Kiontke K, Sudhaus W (2006) Ecology of Caenorhabditis species. WormBook:1-14. doi:10.1895/wormbook.1.37.1
15. Kong Y, Ruan L, Ma L, Cui Y, Wang JM, Le Y (2007) RNA interference as a novel and powerful tool in immunopharmacological research. Int Immunopharmacol 7(4):417-426. doi:10.1016/j.intimp.2006.12.011
16. Lalaouna D, Simoneau-Roy M, Lafontaine D, Masse E (2013) Regulatory RNAs and target mRNA decay in prokaryotes. Biochim Biophys Acta 1829(6-7):742-747. doi:10.1016/j.bbagrm.2013.02.013
17. Lee JT (2012) Epigenetic regulation by long noncoding RNAs. Science 338(6113):1435-1439. doi:10.1126/science.1231776
18. Li Z, Huang C, Bao C, Chen L, Lin M, Wang X, Zhong G, Yu B, Hu W, Dai L, Zhu P, Chang Z, Wu Q, Zhao Y, Jia Y, Xu P, Liu H, Shan G (2015) Exon-intron circular RNAs regulate transcription in the nucleus. Nat Struct Mol Biol 22(3):256-264. doi:10.1038/nsmb.2959
19. Liu H, Wang X, Wang HD, Wu J, Ren J, Meng L, Wu Q, Dong H, Kao TY, Ge Q, Wu ZX, Yuh CH, Shan G (2012) Escherichia coli noncoding RNAs can affect gene expression and physiology of Caenorhabditis elegans. Nat Commun 3:1073. doi:10.1038/ncomms2071
20. McEwan DL, Weisman AS, Hunter CP (2012) Uptake of extracellular double-stranded RNA by SID-2. Mol Cell 47(5):746-754. doi:10.1016/j.molcel.2012.07.014
21. Meng LF, Chen L, Li ZY, Wu ZX, Shan G (2013) Environmental RNA interference in animals. Chin Sci Bull 35:4418-4425
22. Saleh MC, van Rij RP, Hekele A, Gillis A, Foley E, O’Farrell PH, Andino R (2006) The endocytic pathway mediates cell entry of dsRNA to induce RNAi silencing. Nat Cell Biol 8(8):793-802. doi:10.1038/ncb1439
23. Tabara H, Grishok A, Mello CC (1998) RNAi in C. elegans: soaking in the genome sequence. Science 282(5388):430-431
24. Timmons L, Fire A (1998) Specific interference by ingested dsRNA. Nature 395(6705):854. doi:10.1038/27579
25. Ulitsky I, Bartel DP (2013) lincRNAs: genomics, evolution, and mechanisms. Cell 154(1):26-46. doi:10.1016/j.cell.2013.06.020
26. Whangbo JS, Hunter CP (2008) Environmental RNA interference. Trends Genet 24(6):297-305. doi:10.1016/j.tig.2008.03.007
27. Winston WM, Molodowitch C, Hunter CP (2002) Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1. Science 295(5564):2456-2459. doi:10.1126/science.1068836
28. Winston WM, Sutherlin M, Wright AJ, Feinberg EH, Hunter CP (2007) Caenorhabditis elegans SID-2 is required for environmental RNA interference. Proc Natl Acad Sci USA 104(25): 10565-10570. doi:10.1073/pnas.0611282104