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Mouse Genome Informatics (MGI): Reflecting on 25 years
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Eppig JT, Richardson JE, Kadin JA, Ringwald M, Blake JA, Bult CJ (2015) Mouse Genome Informatics (MGI): reflecting on 25 years. Mamm Genome 26:272-284
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Mamm Genome
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Mouse Genome Database: From sequence to phenotypes and disease models
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Eppig JT, Richardson JE, Kadin JA, Smith CL, Blake JA, Bult CJ, MGD Team (2015) Mouse Genome Database: from sequence to phenotypes and disease models. Genesis 53: 458-473
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Genesis
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3
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The mouse Gene Expression Database (GXD): New features and how to get the most out of them
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Finger JH, Smith CM, Hayamizu TF, McCright IJ, Xu J, Eppig JT, Kadin JA, Richardson JE, Ringwald M (2015) The mouse Gene Expression Database (GXD): new features and how to get the most out of them. Genesis 53:510-522
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(2015)
Genesis
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Finger, J.H.1
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Richardson, J.E.8
Ringwald, M.9
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4
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Beyond knockouts: Cre resources for conditional mutagenesis
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Murray SA, Eppig JT, Smedley D, Simpson EM, Rosenthal N (2012) Beyond knockouts: cre resources for conditional mutagenesis. Mamm Genome 23:587-599
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Mouse Tumor Biology (MTB): A database of mouse models for human cancer
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Bult CJ, Krupke DM, Begley DA, Richardson JE, Neuhauser SB, Sundberg JP, Eppig JT (2015) Mouse Tumor Biology (MTB): a database of mouse models for human cancer. Nucleic Acids Res 43:D818-D824
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Nucleic Acids Res
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Human lymphoid and myeloid cell development in NOD/LtSz-scid IL2R gamma null mice engrafted with mobilized human hemopoietic stem cells
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Shultz LD, Lyons BL, Burzenski LM, Gott B, Chen X, Chaleff S, Kotb M, Gillies SD, King M, Mangada J, Greiner DL, Handgretinger R (2005) Human lymphoid and myeloid cell development in NOD/LtSz-scid IL2R gamma null mice engrafted with mobilized human hemopoietic stem cells. J Immunol 174:6477-6489
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7
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The International Mouse Strain Resource (IMSR): Cataloging worldwide mouse and ES cell line resources
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Eppig JT, Motenko H, Richardson JE, Richards-Smith B, Smith CL (2015) The International Mouse Strain Resource (IMSR): cataloging worldwide mouse and ES cell line resources. Mamm Genome 26:448-455
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Mamm Genome
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The Mouse Genome Database (MGD): Facilitating mouse as a model for human biology and disease
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Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE, Mouse Genome Database Group (2015) The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease. Nucleic Acids Res 43:D726-D736
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InterMine: A flexible data warehouse system for the integration and analysis of heterogeneous biological data
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Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G (2012) InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. Bioinformatics 28:3163-3165
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Bioinformatics
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Visual annotation display (VLAD): A tool for finding functional themes in lists of genes
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Richardson JE, Bult CJ (2015) Visual annotation display (VLAD): a tool for finding functional themes in lists of genes. Mamm Genome 26:567-573
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Richardson, J.E.1
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The Human Phenotype Ontology project: Linking molecular biology and disease through phenotype data
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Köhler S, Doelken SC, Mungall CJ, Bauer S, Firth HV, Bailleul-Forestier I, Black GC, Brown DL, Brudno M, Campbell J, FitzPatrick DR, Eppig JT, Jackson AP, Freson K, Girdea M, Helbig I, Hurst JA, Jähn J, Jackson LG, Kelly AM, Ledbetter DH, Mansour S, Martin CL, Moss C, Mumford A, Ouwehand WH, Park SM, Riggs ER, Scott RH, Sisodiya S, Van Vooren S, Wapner RJ, Wilkie AO, Wright CF, Vulto-van Silfhout AT, de Leeuw N, de Vries BB, Washingthon NL, Smith CL, Westerfield M, Schofield P, Ruef BJ, Gkoutos GV, Haendel M, Smedley D, Lewis SE, Robinson PN (2014) The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res 42:D966-D974
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Brudno, M.9
Campbell, J.10
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Jackson, A.P.13
Freson, K.14
Girdea, M.15
Helbig, I.16
Hurst, J.A.17
Jähn, J.18
Jackson, L.G.19
Kelly, A.M.20
Ledbetter, D.H.21
Mansour, S.22
Martin, C.L.23
Moss, C.24
Mumford, A.25
Ouwehand, W.H.26
Park, S.M.27
Riggs, E.R.28
Scott, R.H.29
Sisodiya, S.30
van Vooren, S.31
Wapner, R.J.32
Wilkie, A.O.33
Wright, C.F.34
Vulto-Van Silfhout, A.T.35
de Leeuw, N.36
de Vries, B.B.37
Washingthon, N.L.38
Smith, C.L.39
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Schofield, P.41
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Gkoutos, G.V.43
Haendel, M.44
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Lewis, S.E.46
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Fjoin: Simple and effi- cient computation of feature overlaps
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Richardson JE (2006) fjoin: simple and effi- cient computation of feature overlaps. J Comput Biol 13:1457-1464
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J Comput Biol
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A unified gene catalog for the laboratory mouse reference genome
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Zhu Y, Richardson JE, Hale P, Baldarelli RM, Reed DJ, Recla JM, Sinclair R, Reddy TBK, Bult CJ (2015) A unified gene catalog for the laboratory mouse reference genome. Mamm Genome 26:295-304
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The Mouse Genome Database: Integration of and access to knowledge about the laboratory mouse
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Blake JA, Bult CJ, Eppig JT, Kadin JA, Richardson JE, Mouse Genome Database Group (2014) The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucleic Acids Res 42:D810-D817
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The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
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Smith CL, Eppig JT (2012) The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. Mamm Genome 23:653-668
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Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by largescale mouse knockout screens
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Smith CL, Eppig JT (2015) Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by largescale mouse knockout screens. J Biomed Semantics 6:11
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J Biomed Semantics
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Inferring gene-to-phenotype and geneto- disease relationships at mouse genome informatics: Challenges and solutions
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Bello SM, Eppig JT, MGI Software Group (2016) Inferring gene-to-phenotype and geneto- disease relationships at mouse genome informatics: challenges and solutions. J Biomed Semantics 7:14
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J Biomed Semantics
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