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Volumn 13, Issue 8, 2006, Pages 1457-1464

fjoin: Simple and efficient computation of feature overlaps

Author keywords

Algorithm; Features; Implementation; Intervals; Overlap computation

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; BIOLOGY; COMPUTER PROGRAM; METHODOLOGY;

EID: 39049191299     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2006.13.1457     Document Type: Article
Times cited : (31)

References (21)
  • 1
    • 0003428927 scopus 로고
    • Unpublished paper, Computer Sciences Department, Carnegie-Mellon University, Pittsburgh
    • Bentley, J.L. 1977. Algorithms for Klee's rectangle problem. [Unpublished paper]. Computer Sciences Department, Carnegie-Mellon University, Pittsburgh.
    • (1977) Algorithms for Klee's rectangle problem
    • Bentley, J.L.1
  • 2
    • 58449119269 scopus 로고    scopus 로고
    • Online database resource. Available at
    • dbSNP. 2006. Online database resource. Available at: http://www.ncbi. nlm.nih.gov/SNP.
    • (2006)
    • dbSNP1
  • 3
    • 33746695598 scopus 로고
    • Institute for Information Processing Report 47, Technical University of Graz, Graz, Austria
    • Edelsbrunner, H. 1980. Dynamic Rectangle Intersection Searching. Institute for Information Processing Report 47, Technical University of Graz, Graz, Austria.
    • (1980) Dynamic Rectangle Intersection Searching
    • Edelsbrunner, H.1
  • 4
    • 58449106925 scopus 로고    scopus 로고
    • Online database resource. Available at
    • Ensembl. 2006. Online database resource. Available at: http://www.ensembl.org.
    • (2006)
  • 5
    • 13444254254 scopus 로고    scopus 로고
    • The Mouse Genome Database (MGD): From genes to mice - a community resource for mouse biology
    • Eppig, J.T., Bult, C.J., Kadin, J.A., et al. 2005. The Mouse Genome Database (MGD): from genes to mice - a community resource for mouse biology. Nucleic Acids Res. 33, D471-D475.
    • (2005) Nucleic Acids Res , vol.33
    • Eppig, J.T.1    Bult, C.J.2    Kadin, J.A.3
  • 6
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cDNA sequence with a genomic DNA sequence
    • Florea, L., Hartzell, G., Zhang, Z., et al. 1998. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res. 8, 967-974.
    • (1998) Genome Res , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3
  • 8
    • 58449117231 scopus 로고    scopus 로고
    • GFF3. 2004. Generic Feature Format Version 3. Online documentation. Available at
    • GFF3. 2004. Generic Feature Format Version 3. Online documentation. Available at: http://song.sourceforge.net/gff3-jan04.shtml.
  • 9
    • 0021615874 scopus 로고
    • R-trees: A dynamic index structure for spatial searching
    • Guttman, A. 1984. R-trees: a dynamic index structure for spatial searching. Proc. ACM SIGMOD Conf., 44-57.
    • (1984) Proc. ACM SIGMOD Conf , pp. 44-57
    • Guttman, A.1
  • 10
    • 9144253908 scopus 로고    scopus 로고
    • The mouse Gene Expression Database (GXD): Updates and enhancements
    • Hill, D.P., Begley, D.A., Finger, J.H., et al. 2004. The mouse Gene Expression Database (GXD): updates and enhancements. Nucleic Acids Res. 32, D568-D571.
    • (2004) Nucleic Acids Res , vol.32
    • Hill, D.P.1    Begley, D.A.2    Finger, J.H.3
  • 11
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - the BLAST-Like Alignment Tool
    • Kent, W.J. 2002. BLAT - the BLAST-Like Alignment Tool. Genome Res. 4, 656-664.
    • (2002) Genome Res , vol.4 , pp. 656-664
    • Kent, W.J.1
  • 13
    • 14644433093 scopus 로고    scopus 로고
    • The Mouse Tumor Biology Database: Integrated access to mouse cancer biology data
    • Krupke, D.M., Näf, D., Vincent, M.J., et al. 2005. The Mouse Tumor Biology Database: integrated access to mouse cancer biology data. Exp. Lung Res. 31, 1-12.
    • (2005) Exp. Lung Res , vol.31 , pp. 1-12
    • Krupke, D.M.1    Näf, D.2    Vincent, M.J.3
  • 14
    • 58449124226 scopus 로고    scopus 로고
    • Optimizing genome interval overlap queries using an R-tree index
    • Lapp, H., Mungall, C., Cain, S., et al. 2003. Optimizing genome interval overlap queries using an R-tree index. ISMB Abst.
    • (2003) ISMB Abst
    • Lapp, H.1    Mungall, C.2    Cain, S.3
  • 15
    • 58449100063 scopus 로고    scopus 로고
    • MGI, Online database resource. Available at
    • MGI. 2006. Online database resource. Available at: http://www. informatics.jax.org.
    • (2006)
  • 16
    • 1542563409 scopus 로고    scopus 로고
    • Mouse Genome Sequencing Consortium (MGSC) and Mouse Genome Analysis Group. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562.
    • Mouse Genome Sequencing Consortium (MGSC) and Mouse Genome Analysis Group. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562.
  • 17
    • 0033990061 scopus 로고    scopus 로고
    • Flexible sequence similarity searching with the FASTA3 program package
    • Pearson, W.R. 2000. Flexible sequence similarity searching with the FASTA3 program package. Methods Mol. Biol. 132, 185-219.
    • (2000) Methods Mol. Biol , vol.132 , pp. 185-219
    • Pearson, W.R.1
  • 18
    • 58449114529 scopus 로고    scopus 로고
    • PSL, Online documentation. Available at
    • PSL. 2006. PSL alignment format. Online documentation. Available at: http://bioperl.org/wiki/PSL-alignment-format.
    • (2006) PSL alignment format
  • 21
    • 58449109557 scopus 로고    scopus 로고
    • Online genome browser. Available at
    • UCSC. 2006. Online genome browser. Available at: http://genome.ucsc. edu/.
    • (2006)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.