-
1
-
-
78650046547
-
Methanoregula formicica sp. nov., a methane-producing archaeon isolated from methanogenic sludge
-
Yashiro Y, Sakai S, Ehara M, Miyazaki M, Yamaguchi T, Imachi H. 2011 Methanoregula formicica sp. nov., a methane-producing archaeon isolated from methanogenic sludge. Int. J. Syst. Evol. Microbiol. 61:53-59. http://dx.doi.org/10.1099/ijs.0.014811-0.
-
(2011)
Int. J. Syst. Evol. Microbiol
, vol.61
, pp. 53-59
-
-
Yashiro, Y.1
Sakai, S.2
Ehara, M.3
Miyazaki, M.4
Yamaguchi, T.5
Imachi, H.6
-
2
-
-
84861884844
-
Methanolinea mesophila sp. nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov. within the order Methanomicrobiales
-
Sakai S, Ehara M, Tseng I-C, Yamaguchi T, Bräuer SL, Cadillo-Quiroz H, Zinder SH, Imachi H. 2012. Methanolinea mesophila sp. nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov. within the order Methanomicrobiales. Int. J. Syst. Evol. Microbiol. 62:1389-1395. http://dx.doi.org/10.1099/ijs.0.035048-0.
-
(2012)
Int. J. Syst. Evol. Microbiol
, vol.62
, pp. 1389-1395
-
-
Sakai, S.1
Ehara, M.2
Tseng, I.-C.3
Yamaguchi, T.4
Bräuer, S.L.5
Cadillo-Quiroz, H.6
Zinder, S.H.7
Imachi, H.8
-
3
-
-
78651463463
-
Methanoregula boonei gen. nov., sp. nov., an acidophilic methanogen isolated from an acidic peat bog
-
Bräuer SL, Cadillo-Quiroz H, Ward RJ, Yavitt JB, Zinder SH. 2011. Methanoregula boonei gen. nov., sp. nov., an acidophilic methanogen isolated from an acidic peat bog. Int. J. Syst. Evol. Microbiol. 61:45-52. http://dx.doi.org/10.1099/ijs.0.021782-0.
-
(2011)
Int. J. Syst. Evol. Microbiol
, vol.61
, pp. 45-52
-
-
Bräuer, S.L.1
Cadillo-Quiroz, H.2
Ward, R.J.3
Yavitt, J.B.4
Zinder, S.H.5
-
4
-
-
40449132267
-
Methanolinea tarda gen. nov., sp. nov., a methane-producing archaeon isolated from a methanogenic digester sludge
-
Imachi H, Sakai S, Sekiguchi Y, Hanada S, Kamagata Y, Ohashi A, Harada H. 2008. Methanolinea tarda gen. nov., sp. nov., a methane-producing archaeon isolated from a methanogenic digester sludge. Int. J. Syst. Evol. Microbiol. 58:294-301. http://dx.doi.org/10.1099/ijs.0.65394-0.
-
(2008)
Int. J. Syst. Evol. Microbiol
, vol.58
, pp. 294-301
-
-
Imachi, H.1
Sakai, S.2
Sekiguchi, Y.3
Hanada, S.4
Kamagata, Y.5
Ohashi, A.6
Harada, H.7
-
5
-
-
67649787310
-
Methanosphaerula palustris gen. nov., sp. nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland
-
Cadillo-Quiroz H, Yavitt JB, Zinder SH. 2009. Methanosphaerula palustris gen. nov., sp. nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland. Int. J. Syst. Evol. Microbiol. 59:928-935. http://dx.doi.org/10.1099/ijs.0.006890-0.
-
(2009)
Int. J. Syst. Evol. Microbiol
, vol.59
, pp. 928-935
-
-
Cadillo-Quiroz, H.1
Yavitt, J.B.2
Zinder, S.H.3
-
6
-
-
79952178131
-
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
-
Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A, Nusbaum C, Lander ES, Jaffe DB. 2011. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl. Acad. Sci. U. S. A. 108: 1513-1518. http://dx.doi.org/10.1073/pnas.1017351108.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A
, vol.108
, pp. 1513-1518
-
-
Gnerre, S.1
MacCallum, I.2
Przybylski, D.3
Ribeiro, F.J.4
Burton, J.N.5
Walker, B.J.6
Sharpe, T.7
Hall, G.8
Shea, T.P.9
Sykes, S.10
Berlin, A.M.11
Aird, D.12
Costello, M.13
Daza, R.14
Williams, L.15
Nicol, R.16
Gnirke, A.17
Nusbaum, C.18
Lander, E.S.19
Jaffe, D.B.20
more..
-
7
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. http://dx.doi.org/10.1101/gr.074492.107.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
8
-
-
77952299957
-
Prodigal: prokaryotic gene recognition and translation initiation site identification
-
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ. 2010 Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. http://dx.doi.org/10.1186/1471-2105-11-119.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
-
9
-
-
75849124594
-
The DOE-JGI standard operating procedure for the annotations of microbial genomes
-
Mavromatis K, Ivanova NN, Chen IM, Szeto E, Markowitz VM, Kyrpides NC. 2009. The DOE-JGI standard operating procedure for the annotations of microbial genomes. Stand. Genomic Sci. 1:63-67. http://dx.doi.org/10.4056/sigs.632.
-
(2009)
Stand. Genomic Sci
, vol.1
, pp. 63-67
-
-
Mavromatis, K.1
Ivanova, N.N.2
Chen, I.M.3
Szeto, E.4
Markowitz, V.M.5
Kyrpides, N.C.6
-
10
-
-
77953023066
-
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
-
Pati A, Ivanova NN, Mikhailova N, Ovchinnikova G, Hooper SD, Lykidis A, Kyrpides NC. 2010. GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. Nat. Methods 7:455-457. http://dx.doi.org/10.1038/nmeth.1457.
-
(2010)
Nat. Methods
, vol.7
, pp. 455-457
-
-
Pati, A.1
Ivanova, N.N.2
Mikhailova, N.3
Ovchinnikova, G.4
Hooper, S.D.5
Lykidis, A.6
Kyrpides, N.C.7
-
11
-
-
69949116874
-
IMG ER: a system for microbial genome annotation expert review and curation
-
Markowitz VM, Mavromatis K, Ivanova NN, Chen IM, Chu K, Kyrpides NC. 2009. IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25:2271-2278. http://dx.doi.org/10.1093/bioinformatics/btp393.
-
(2009)
Bioinformatics
, vol.25
, pp. 2271-2278
-
-
Markowitz, V.M.1
Mavromatis, K.2
Ivanova, N.N.3
Chen, I.M.4
Chu, K.5
Kyrpides, N.C.6
-
12
-
-
0035162592
-
The COG database: new developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV. 2001. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29:22-28. http://dx.doi.org/10.1093/nar/29.1.22.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
|