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Volumn 2, Issue 5, 2014, Pages

De novo whole-genome sequence and genome annotation of Lichtheimia ramosa

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EID: 85004075745     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00888-14     Document Type: Article
Times cited : (24)

References (30)
  • 2
    • 84922319400 scopus 로고    scopus 로고
    • Mucormycosis-from the pathogens to the disease
    • Binder U, Maurer E, Lass-Flörl C. 2014. Mucormycosis-from the pathogens to the disease. Clin. Microbiol. Infect. 20:60-66. http://dx.doi.org/10.1111/1469-0691.12566.
    • (2014) Clin. Microbiol. Infect , vol.20 , pp. 60-66
    • Binder, U.1    Maurer, E.2    Lass-Flörl, C.3
  • 3
    • 71549171715 scopus 로고    scopus 로고
    • Molecular and phenotypic evaluation of Lichtheimia corymbifera (formerly Absidia corymbifera) complex isolates associated with human mucormycosis: rehabilitation of L. ramosa
    • Garcia-Hermoso D, Hoinard D, Gantier JC, Grenouillet F, Dromer F, Dannaoui E. 2009. Molecular and phenotypic evaluation of Lichtheimia corymbifera (formerly Absidia corymbifera) complex isolates associated with human mucormycosis: rehabilitation of L. ramosa. J. Clin. Microbiol. 47:3862-3870. http://dx.doi.org/10.1128/JCM.02094-08.
    • (2009) J. Clin. Microbiol , vol.47 , pp. 3862-3870
    • Garcia-Hermoso, D.1    Hoinard, D.2    Gantier, J.C.3    Grenouillet, F.4    Dromer, F.5    Dannaoui, E.6
  • 6
  • 7
    • 85003892386 scopus 로고    scopus 로고
    • Chapter. 27 Human fungal pathogens of Mucorales and Entomophthorales. 27
    • Casadevall A, Mitchell AP, Berman J, Kwon-Chung KJ, Perfect JR, Heitman T (ed), in press. Cold Spring Harbor Press, Cold Spring Harbor, NY
    • Mendoza L, Vilela R, Voelz K, Ibrahim AS, Voigt K, Lee SC. Chapter. 27 Human fungal pathogens of Mucorales and Entomophthorales. 27. In Casadevall A, Mitchell AP, Berman J, Kwon-Chung KJ, Perfect JR, Heitman T (ed). Human fungal pathogens, in press. Cold Spring Harbor Press, Cold Spring Harbor, NY.
    • Human fungal pathogens
    • Mendoza, L.1    Vilela, R.2    Voelz, K.3    Ibrahim, A.S.4    Voigt, K.5    Lee, S.C.6
  • 8
    • 85003850845 scopus 로고    scopus 로고
    • Genomics to study basal lineage fungal biology: phylogenomics suggests a common origin
    • Nowrousian M (ed), 2nd ed. Springer, Berlin
    • Shelest E, Voigt K. 2014. Genomics to study basal lineage fungal biology: phylogenomics suggests a common origin, p 31-60. In Nowrousian M (ed), The mycota, vol XIII, 2nd ed., vol XIII. Springer, Berlin.
    • (2014) The mycota , vol.13 , pp. 31-60
    • Shelest, E.1    Voigt, K.2
  • 9
    • 85003680958 scopus 로고    scopus 로고
    • Complete mitochondrial genome sequence of Lichtheimia ramosa (syn. Lichtheimia hongkongensis)
    • Leung S-Y, Huang Y, Lau SKP, Woo PCY. 2014. Complete mitochondrial genome sequence of Lichtheimia ramosa (syn. Lichtheimia hongkongensis). Genome Announc. 2(4):e00644-14. http://dx.doi.org/10.1128/genomeA.00644-14.
    • (2014) Genome Announc , vol.2 , Issue.4
    • Leung, S.-Y.1    Huang, Y.2    Lau, S.K.P.3    Woo, P.C.Y.4
  • 10
    • 0022425367 scopus 로고
    • Strain-dependent variation in ribosomal DNA arrangement in Absidia glauca
    • Wöstemeyer J. 1985. Strain-dependent variation in ribosomal DNA arrangement in Absidia glauca. Eur. J. Biochem. 146:443-448. http://dx.doi.org/10.1111/j.1432-1033.1985.tb08671.x.
    • (1985) Eur. J. Biochem , vol.146 , pp. 443-448
    • Wöstemeyer, J.1
  • 11
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. http://dx.doi.org/10.1101/gr.074492.107.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 14
    • 84863519354 scopus 로고    scopus 로고
    • SEQuel: improving the accuracy of genome assemblies
    • Ronen R, Boucher C, Chitsaz H, Pevzner P. 2012. SEQuel: improving the accuracy of genome assemblies. Bioinformatics 28:i188-i196. http://dx.doi.org/10.1093/bioinformatics/bts219.
    • (2012) Bioinformatics , vol.28 , pp. i188-i196
    • Ronen, R.1    Boucher, C.2    Chitsaz, H.3    Pevzner, P.4
  • 16
    • 42949086676 scopus 로고    scopus 로고
    • Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
    • Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR. 2008. Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments. Genome Biol. 9:R7. http://dx.doi.org/10.1186/gb-2008-9-1-r7.
    • (2008) Genome Biol , vol.9 , pp. R7
    • Haas, B.J.1    Salzberg, S.L.2    Zhu, W.3    Pertea, M.4    Allen, J.E.5    Orvis, J.6    White, O.7    Buell, C.R.8    Wortman, J.R.9
  • 17
    • 84857623318 scopus 로고    scopus 로고
    • Eukaryotic gene prediction using GeneMark.hmm-E and GeneMark-ES
    • 4.6.1-4.6.10
    • Borodovsky M, Lomsadze A. 2011. Eukaryotic gene prediction using GeneMark.hmm-E and GeneMark-ES. Curr. Protoc. Bioinformatics 35(4.6):4.6.1-4.6.10. http://dx.doi.org/10.1002/0471250953.bi0406s35.
    • (2011) Curr. Protoc. Bioinformatics , vol.35 , Issue.4-6
    • Borodovsky, M.1    Lomsadze, A.2
  • 18
    • 40049091292 scopus 로고    scopus 로고
    • Using native and syntenically mapped cDNA alignments to improve de novo gene finding
    • Stanke M, Diekhans M, Baertsch R, Haussler D. 2008. Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 24:637-644. http://dx.doi.org/10.1093/bioinformatics/btn013.
    • (2008) Bioinformatics , vol.24 , pp. 637-644
    • Stanke, M.1    Diekhans, M.2    Baertsch, R.3    Haussler, D.4
  • 19
    • 2942544417 scopus 로고    scopus 로고
    • Gene finding in novel genomes
    • Korf I. 2004. Gene finding in novel genomes. BMC Bioinformatics 5:59. http://dx.doi.org/10.1186/1471-2105-5-59.
    • (2004) BMC Bioinformatics , vol.5 , pp. 59
    • Korf, I.1
  • 20
  • 21
    • 0034065724 scopus 로고    scopus 로고
    • Ab initio gene finding in Drosophila genomic DNA
    • Salamov AA, Solovyev VV. 2000. Ab initio gene finding in Drosophila genomic DNA. Genome Res. 10:516-522. http://dx.doi.org/10.1101/gr.10.4.516.
    • (2000) Genome Res , vol.10 , pp. 516-522
    • Salamov, A.A.1    Solovyev, V.V.2
  • 23
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • Slater GS, Birney E. 2005. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6:31. http://dx.doi.org/10.1186/1471-2105-6-31.
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 24
    • 46649114758 scopus 로고    scopus 로고
    • Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
    • Keller O, Odronitz F, Stanke M, Kollmar M, Waack S. 2008. Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species. BMC Bioinformatics 9:278. http://dx.doi.org/10.1186/1471-2105-9-278.
    • (2008) BMC Bioinformatics , vol.9 , pp. 278
    • Keller, O.1    Odronitz, F.2    Stanke, M.3    Kollmar, M.4    Waack, S.5
  • 25
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. 2005. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21:3674-3676. http://dx.doi.org/10.1093/bioinformatics/bti610.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 27
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden markov model: application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL. 2001. Predicting transmembrane protein topology with a hidden markov model: application to complete genomes. J. Mol. Biol. 305:567-580. http://dx.doi.org/10.1006/jmbi.2000.4315.
    • (2001) J. Mol. Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.4
  • 30
    • 34249848751 scopus 로고    scopus 로고
    • CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
    • Parra G, Bradnam K, Korf I. 2007. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23:1061-1067. http://dx.doi.org/10.1093/bioinformatics/btm071.
    • (2007) Bioinformatics , vol.23 , pp. 1061-1067
    • Parra, G.1    Bradnam, K.2    Korf, I.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.