Genome sequences of five Oenococcus oeni strains isolated from Nero di Troia wine from the same terroir in Apulia, southern Italy

Genome Announcements

Volumn 2, Issue 5, 2014, Pages

  Capozzi, Vittorio ^a   Russo, Pasquale ^a   Lamontanara, Antonella ^b   Orrù, Luigi ^b   Cattivelli, Luigi ^b   Spano, Giuseppe ^a  

^a UNIVERSITY OF FOGGIA   (Italy)

^b CRA GPG (Consiglio per la Ricerca e Sperimentazione in Agricoltura Centro di Ricerca   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85004001459     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.01077-14     Document Type: Article

References (23)

1. Lonvaud-Funel A. 1999. Lactic acid bacteria in the quality improvement and depreciation of wine. Antonie Van Leeuwenhoek 76:317-331. http://dx.doi.org/10.1023/A:1002088931106.
2. Bartowsky EJ, Borneman AR. 2011. Genomic variations of Oenococcus oeni strains and the potential to impact on malolactic fermentation and aroma compounds in wine. Appl. Microbiol. Biotechnol. 92:441-447. http://dx.doi.org/10.1007/s00253-011-3546-2.
3. Bartowsky E. 2005. Oenococcus oeni and malolactic fermentation-moving into the molecular arena. Aust. J. Grape Wine Res. 11:174-187. http://dx.doi.org/10.1111/j.1755-0238.2005.tb00286.x.
4. Capozzi V, Spano G. 2011. Food microbial biodiversity and "microbes of protected origin." Front. Microbiol. 2:237. http://dx.doi.org/10.3389/fmicb.2011.00237.
5. Capozzi V, Spano G, Fiocco D. 2012. Transdisciplinarity and microbiology education. J. Microbiol. Biol. Educ. 13:70-73. http://dx.doi.org/10.1128/jmbe.v13i1.365.
6. Capozzi V, Russo P, Spano G. 2012. Microbial information regimen in EU Geographical Indications. World Pat. Inf. 34:229-231. http://dx.doi.org/10.1016/j.wpi.2012.04.001.
7. Bokulich NA, Thorngate JH, Richardson PM, Mills DA. 2014. Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate. Proc. Natl. Acad. Sci. U. S. A. 111:E139-E148. http://dx.doi.org/10.1073/pnas.1317377110.
8. Gilbert JA, van der Lelie D, Zarraonaindia I. 2014. Microbial terroir for wine grapes. Proc. Natl. Acad. Sci. U. S. A. 111:5-6. http://dx.doi.org/10.1073/pnas.1320471110.
9. Mills DA, Rawsthorne H, Parker C, Tamir D, Makarova K. 2005. Genomic analysis of Oenococcus oeni PSU-1 and its relevance to winemaking. FEMS Microbiol. Rev. 29:465-475. http://dx.doi.org/10.1016/j.fmrre. 2005.04.011.
10. Borneman AR, McCarthy JM, Chambers PJ, Bartowsky EJ. 2012. Comparative analysis of the Oenococcus oeni pan genome reveals genetic diversity in industrially-relevant pathways. BMC Genomics 13:373. http://dx.doi.org/10.1186/1471-2164-13-373.
11. Dimopoulou M, Vuillemin M, Campbell-Sills H, Lucas PM, Ballestra P, Miot-Sertier C, Favier M, Coulon J, Moine V, Doco T, Roques M, Williams P, Petrel M, Gontier E, Moulis C, Remaud-Simeon M, Dols-Lafargue M. 2014. Exopolysaccharide (EPS) synthesis by Oenococcus oeni: from genes to phenotypes. PLoS One 9:e98898. http://dx.doi.org/10.1371/journal.pone.0098898.
12. Lamontanara A, Orrù L, Cattivelli L, Russo P, Spano G, Capozzi V. 2014 Genome sequence of Oenococcus oeni OM27, the first fully assembled genome of a strain isolated from an Italian wine. Genome Announc. 2(4):e00658-14. http://dx.doi.org/10.1128/genomeA.00658-14.
13. Mohedano MDLL, Russo P, de los Rios V, Capozzi V, Spano G, López P. 2014. A proteome reference map of the wine lactic acid bacteria Oenococcus oeni ATCC BAA-1163. Open Biol. 4 1-10. http://dx.doi.org/10.1098/rsob.130154.
14. Capozzi V, Russo P, Beneduce L, Weidmann S, Grieco F, Guzzo J, Spano G. 2010. Technological properties of Oenococcus oeni strains isolated from typical southern Italian wines. Lett. Appl. Microbiol. 50: 327-334. http://dx.doi.org/10.1111/j.1472-765X.2010.02795.x.
15. Spano G, Russo P, Lonvaud-Funel A, Lucas P, Alexandre H, Grandvalet C, Coton E, Coton M, Barnavon L, Bach B, Rattray F, Bunte A, Magni C, Ladero V, Alvarez M, Fernández M, Lopez P, de Palencia PF, Corbi A, Trip H, Lolkema JS. 2010. Biogenic amines in fermented foods. Eur. J. Clin. Nutr. 64(Suppl 3):95-100. http://dx.doi.org/10.1038/ejcn.2010.218.
16. Capozzi V, Ladero V, Beneduce L, Fernández M, Alvarez MA, Benoit B, Laurent B, Grieco F, Spano G. 2011. Isolation and characterization of tyramine-producing Enterococcus faecium strains from red wine. Food Microbiol. 28:434-439. http://dx.doi.org/10.1016/j.fm.2010.10.005.
17. Garcia-Moruno E, Muñoz R. 2012. Does Oenococcus oeni produce histamine? Int. J. Food Microbiol. 157:121-129. http://dx.doi.org/10.1016/j.ijfoodmicro. 2012.05.013.
18. Spano G, Massa S. 2006. Environmental stress response in wine lactic acid bacteria: beyond Bacillus subtilis. Crit. Rev. Microbiol. 32:77-86. http://dx.doi.org/10.1080/10408410600709800.
19. Capozzi V, Russo P, Ladero V, Fernández M, Fiocco D, Alvarez MA, Grieco F, Spano G. 2012. Biogenic amines degradation by Lactobacillus plantarum: toward a potential application in wine. Front Microbiol. 3:122. http://dx.doi.org/10.3389/fmicb.2012.00122.
20. Malherbe S, Menichelli E, du Toit M, Tredoux A, Muller N, Naes T, Nieuwoudt H. 2013. The relationships between consumer liking, sensory and chemical attributes of Vitis vinifera L. cv. Pinotage wines elaborated with different Oenococcus oeni starter cultures. J. Sci. Food Agric. 93: 2829-2840. http://dx.doi.org/10.1002/jsfa.6115.
21. Lerm E, Engelbrecht L, du Toit M. 2010. Malolactic fermentation: the ABC's of MLF. S. Afr. J. Enol. Vitic. 31:186-212.
22. Schmieder R, Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27:863-864. http://dx.doi.org/10.1093/bioinformatics/btr026.
23. Boisvert S, Laviolette F, Corbeil J. 2010. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies. J. Comput. Biol. 17:1519-1533. http://dx.doi.org/10.1089/cmb.2009.0238.