메뉴 건너뛰기




Volumn 12, Issue 2, 2017, Pages 115-119

Drug discovery beyond the rule of 5 - Opportunities and challenges

Author keywords

Beyond rule of 5; conformational flexibility; difficult target; macrocycle; oral absorption

Indexed keywords

CYCLOPEPTIDE; MACROCYCLIC COMPOUND; NONSTRUCTURAL PROTEIN 5A INHIBITOR; DRUG;

EID: 85003899069     PISSN: 17460441     EISSN: 1746045X     Source Type: Journal    
DOI: 10.1080/17460441.2017.1264385     Document Type: Editorial
Times cited : (84)

References (20)
  • 1
    • 84856389159 scopus 로고    scopus 로고
    • Structural biology and drug discovery of difficult targets: the limits of ligandability
    • Surade S, Blundell TL., Structural biology and drug discovery of difficult targets:the limits of ligandability. Chem Biol. 2012;19:42–50. DOI:10.1016/j.chembiol.2011.12.013
    • (2012) Chem Biol , vol.19 , pp. 42-50
    • Surade, S.1    Blundell, T.L.2
  • 2
    • 0031024171 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski CA, Lombardo F, Dominy BW, et al. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Delivery Rev. 1997;23:3–25. DOI:10.1016/S0169-409X(96)00423-1
    • (1997) Adv Drug Delivery Rev , vol.23 , pp. 3-25
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3
  • 3
    • 84906307859 scopus 로고    scopus 로고
    • How proteins bind macrocycles
    • Villar EA, Beglov D, Chennamadhavuni S, et al. How proteins bind macrocycles. Nat Chem Biol. 2014;10:723–732. DOI:10.1038/nchembio.1584•• An innovative analysis of how a representative set of macrocyclic natural products is bound by proteins, including a discussion of how this impacts design of synthetic macrocyclic libraries.
    • (2014) Nat Chem Biol , vol.10 , pp. 723-732
    • Villar, E.A.1    Beglov, D.2    Chennamadhavuni, S.3
  • 4
    • 84909587217 scopus 로고    scopus 로고
    • Small-molecule inhibitors of protein-protein interactions: progressing toward the reality
    • Arkin MR, Tang Y, Wells JA. Small-molecule inhibitors of protein-protein interactions:progressing toward the reality. Chem Biol. 2014;21:1102–1114. DOI:10.1016/j.chembiol.2014.09.001•• A clear analysis of different types of protein–protein interactions (PPIs) and the properties of PPI inhibitors that have progressed to clinical trials as well as future opportunities in PPI drug discovery.
    • (2014) Chem Biol , vol.21 , pp. 1102-1114
    • Arkin, M.R.1    Tang, Y.2    Wells, J.A.3
  • 5
    • 84962163302 scopus 로고    scopus 로고
    • How beyond rule of 5 drugs and clinical candidates bind to their targets
    • Doak BC, Zheng J, Dobritzsch D, et al. How beyond rule of 5 drugs and clinical candidates bind to their targets. J Med Chem. 2016;59:2312–2327. DOI:10.1021/acs.jmedchem.5b01286•• An in-depth and comprehensive analysis of drug-target complexes that illustrates the potential of compounds far into bRo5 space to modulate novel and difficult target classes that have large, flat,and groove-shaped binding sites.
    • (2016) J Med Chem , vol.59 , pp. 2312-2327
    • Doak, B.C.1    Zheng, J.2    Dobritzsch, D.3
  • 6
    • 84909586310 scopus 로고    scopus 로고
    • Oral druggable space beyond the rule of 5: insights from drugs and clinical candidates
    • Doak BC, Over B, Giordanetto F, et al. Oral druggable space beyond the rule of 5:insights from drugs and clinical candidates. Chem Biol. 2014;21:1115–1142. DOI:10.1016/j.chembiol.2014.08.013•• A comprehensive investigation of drugs and clinical candidates with MW >500 Da that reveals significant opportunities for discovery of oral drugs in chemical space beyond the rule of 5, and also defines chemical space that provides a reasonable chance of success.
    • (2014) Chem Biol , vol.21 , pp. 1115-1142
    • Doak, B.C.1    Over, B.2    Giordanetto, F.3
  • 7
    • 84964799737 scopus 로고    scopus 로고
    • Cell permeability beyond the rule of 5
    • Matsson P, Doak BC, Over B, et al. Cell permeability beyond the rule of 5. Adv Drug Delivery Rev. 2016;101:42–61. DOI:10.1016/j.addr.2016.03.013• A review of how structural features and conformational flexibility affect passive cell permeability, as well as transporter mediated uptake and efflux, obtained by analysis of large sets of bRo5 drugs and clinical candidates, macrocyclic peptides and de novo designed, natural product like macrocycles.
    • (2016) Adv Drug Delivery Rev , vol.101 , pp. 42-61
    • Matsson, P.1    Doak, B.C.2    Over, B.3
  • 8
    • 0037030653 scopus 로고    scopus 로고
    • Molecular properties that influence the oral bioavailability of drug candidates
    • Veber DF, Johnson SR, Cheng H-Y, et al. Molecular properties that influence the oral bioavailability of drug candidates. J Med Chem. 2002;45:2615–2623.
    • (2002) J Med Chem , vol.45 , pp. 2615-2623
    • Veber, D.F.1    Johnson, S.R.2    Cheng, H.-Y.3
  • 9
    • 84975740643 scopus 로고    scopus 로고
    • Quantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs
    • Whitty A, Zhong M, Viarengo L, et al. Quantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs. Drug Discov Today. 2016;21:712–717. DOI:10.1016/j.drudis.2016.02.005•• A clear and educational discussion of the importance of conformational flexibility for good solubility and passive permeability for compounds having MW >600 Da.
    • (2016) Drug Discov Today , vol.21 , pp. 712-717
    • Whitty, A.1    Zhong, M.2    Viarengo, L.3
  • 10
    • 84903318804 scopus 로고    scopus 로고
    • Conformational restriction: an effective tactic in ‘follow-on’-based drug discovery
    • Fang Z, Song Y, Zhan P, et al. Conformational restriction:an effective tactic in ‘follow-on’-based drug discovery. Future Med Chem. 2014;6:885–901. DOI:10.4155/fmc.14.50
    • (2014) Future Med Chem , vol.6 , pp. 885-901
    • Fang, Z.1    Song, Y.2    Zhan, P.3
  • 11
    • 0031565727 scopus 로고    scopus 로고
    • The NMR solution conformation of unligated human cyclophilin A
    • Ottiger M, Zerbe O, Güntert P, et al. The NMR solution conformation of unligated human cyclophilin A. J Mol Biol. 1997;272(1):64–81. DOI:10.1006/jmbi.1997.1220
    • (1997) J Mol Biol , vol.272 , Issue.1 , pp. 64-81
    • Ottiger, M.1    Zerbe, O.2    Güntert, P.3
  • 12
    • 5244224827 scopus 로고    scopus 로고
    • X-ray and NMR structure of human Bcl-xL, an inhibitor of programmed cell death
    • Muchmore SW, Sattler M, Liang H, et al. X-ray and NMR structure of human Bcl-xL, an inhibitor of programmed cell death. Nature. 1996;381(6580):335–341. DOI:10.1038/381335a0
    • (1996) Nature , vol.381 , Issue.6580 , pp. 335-341
    • Muchmore, S.W.1    Sattler, M.2    Liang, H.3
  • 13
    • 84873540049 scopus 로고    scopus 로고
    • ABT-199, a potent and selective BCL-2 inhibitor, achieves antitumor activity while sparing platelets
    • Souers AJ, Leverson JD, Boghaert ER, et al. ABT-199, a potent and selective BCL-2 inhibitor, achieves antitumor activity while sparing platelets. Nature Med. 2013;19:202–208. DOI:10.1038/nm.3048
    • (2013) Nature Med , vol.19 , pp. 202-208
    • Souers, A.J.1    Leverson, J.D.2    Boghaert, E.R.3
  • 14
    • 77149159117 scopus 로고    scopus 로고
    • Peptidomimetic antibiotics target outer-membrane biogenesis in Pseudomonas aeruginosa
    • Srinivas N, Jetter P, Ueberbacher BJ, et al. Peptidomimetic antibiotics target outer-membrane biogenesis in Pseudomonas aeruginosa. Science. 2010;327:1010–1013. DOI:10.1126/science.1182749
    • (2010) Science , vol.327 , pp. 1010-1013
    • Srinivas, N.1    Jetter, P.2    Ueberbacher, B.J.3
  • 15
    • 84903751880 scopus 로고    scopus 로고
    • Anti-diabetic activity of insulin-degrading enzyme inhibitors mediated by multiple hormones
    • Maianti JP, McFedries A, Foda ZH, et al. Anti-diabetic activity of insulin-degrading enzyme inhibitors mediated by multiple hormones. Nature. 2014;511:94–98. DOI:10.1038/nature13297
    • (2014) Nature , vol.511 , pp. 94-98
    • Maianti, J.P.1    McFedries, A.2    Foda, Z.H.3
  • 16
    • 84961285814 scopus 로고    scopus 로고
    • Small-molecule PROTACS: new approaches to protein degradation
    • Toure M, Cm C. Small-molecule PROTACS:new approaches to protein degradation. Angew Chem Int Ed. 2016;55:1966–1973. DOI:10.1002/anie.201507978
    • (2016) Angew Chem Int Ed , vol.55 , pp. 1966-1973
    • Toure, M.1    Cm, C.2
  • 17
    • 84976865397 scopus 로고    scopus 로고
    • iPPI-DB: an online database of modulators of protein–protein interactions
    • Labbé CM, Kuenemann MA, Zarzycka B, et al. iPPI-DB:an online database of modulators of protein–protein interactions. Nucleic Acids Res. 2016;44(D1):D542–D547. DOI:10.1093/nar/gkv982
    • (2016) Nucleic Acids Res , vol.44 , Issue.D1 , pp. D542-D547
    • Labbé, C.M.1    Kuenemann, M.A.2    Zarzycka, B.3
  • 18
    • 84859332583 scopus 로고    scopus 로고
    • Conformational dynamics and thermodynamics of protein–ligand binding studied by NMR relaxation
    • Akke M. Conformational dynamics and thermodynamics of protein–ligand binding studied by NMR relaxation. Biochem Soc Trans. 2012;40:419–423. DOI:10.1042/BST20120094• A discussion of how ligand binding may influence the conformational flexibility of proteins that points out that increased flexibility of the ligand bound target has been found to contribute favorably to the binding affinity.
    • (2012) Biochem Soc Trans , vol.40 , pp. 419-423
    • Akke, M.1
  • 19
    • 70450184400 scopus 로고    scopus 로고
    • Design strategies of novel NNRTIs to overcome drug resistance
    • Zhan P, Liu X, Li Z, et al. Design strategies of novel NNRTIs to overcome drug resistance. Curr Med Chem. 2009;16:3903–3917.
    • (2009) Curr Med Chem , vol.16 , pp. 3903-3917
    • Zhan, P.1    Liu, X.2    Li, Z.3
  • 20
    • 46449115901 scopus 로고    scopus 로고
    • The exploration of macrocycles for drug discovery–an underexploited structural class
    • Driggers EM, Hale SP, Lee J, et al. The exploration of macrocycles for drug discovery–an underexploited structural class. Nat Rev Drug Discovery. 2008;7:608–624. DOI:10.1038/nrd2590• A pioneering and influential paper that points out that macrocycles provide untapped opportunities for discovery of oral drugs directed toward targets having difficult binding sites.
    • (2008) Nat Rev Drug Discovery , vol.7 , pp. 608-624
    • Driggers, E.M.1    Hale, S.P.2    Lee, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.