메뉴 건너뛰기




Volumn 17, Issue 4, 2017, Pages 721-729

A comparison of DNA extraction methods for high-throughput DNA analyses

Author keywords

community genetics; comparative phylogeography; fish; macrophytes; marine invertebrates; population genomics

Indexed keywords

DNA;

EID: 85003876247     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12620     Document Type: Article
Times cited : (76)

References (35)
  • 1
    • 79251543637 scopus 로고    scopus 로고
    • Ancient DNA from lake sediments: bridging the gap between paleoecology and genetics
    • Anderson-Carpenter LL, McLachlan JS, Jackson ST et al. (2011) Ancient DNA from lake sediments: bridging the gap between paleoecology and genetics. BMC Evolutionary Biology, 11, 1–44.
    • (2011) BMC Evolutionary Biology , vol.11 , pp. 1-44
    • Anderson-Carpenter, L.L.1    McLachlan, J.S.2    Jackson, S.T.3
  • 2
    • 84897646129 scopus 로고    scopus 로고
    • Phylogeography unplugged: comparative surveys in the genomic era
    • Bowen BW, Shanker K, Yasuda N et al. (2014) Phylogeography unplugged: comparative surveys in the genomic era. Bulletin of Marine Science, 90, 13–46.
    • (2014) Bulletin of Marine Science , vol.90 , pp. 13-46
    • Bowen, B.W.1    Shanker, K.2    Yasuda, N.3
  • 3
    • 84855194204 scopus 로고    scopus 로고
    • Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics
    • Bybee SM, Bracken-Grissom H, Haynes BD et al. (2011) Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics. Genome Biology and Evolution, 3, 1312–1323.
    • (2011) Genome Biology and Evolution , vol.3 , pp. 1312-1323
    • Bybee, S.M.1    Bracken-Grissom, H.2    Haynes, B.D.3
  • 5
    • 77956483300 scopus 로고    scopus 로고
    • An efficient method to find potentially universal population genetic markers, applied to metazoans
    • Chenuil A, Hoareau TB, Egea E et al. (2010) An efficient method to find potentially universal population genetic markers, applied to metazoans. BMC Evolutionary Biology, 10, 276–293.
    • (2010) BMC Evolutionary Biology , vol.10 , pp. 276-293
    • Chenuil, A.1    Hoareau, T.B.2    Egea, E.3
  • 6
    • 0032425012 scopus 로고    scopus 로고
    • Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution
    • Colgan DJ, McLauchlan A, Wilson GDF et al. (1998) Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution. Australian Journal of Zoology, 46, 419–437.
    • (1998) Australian Journal of Zoology , vol.46 , pp. 419-437
    • Colgan, D.J.1    McLauchlan, A.2    Wilson, G.D.F.3
  • 7
    • 84890311354 scopus 로고    scopus 로고
    • Natural experiments and meta-analyses in comparative phylogeography
    • Dawson MN (2014) Natural experiments and meta-analyses in comparative phylogeography. Journal of Biogeography, 41, 52–65.
    • (2014) Journal of Biogeography , vol.41 , pp. 52-65
    • Dawson, M.N.1
  • 10
    • 0036056608 scopus 로고    scopus 로고
    • Comparison of seven DNA extraction and amplification protocols in historical herbarium specimens of Juncaceae
    • Drabkova L, Kirschner JAN, Vlĉek Ĉ (2002) Comparison of seven DNA extraction and amplification protocols in historical herbarium specimens of Juncaceae. Plant Molecular Biology Reporter, 20, 161–175.
    • (2002) Plant Molecular Biology Reporter , vol.20 , pp. 161-175
    • Drabkova, L.1    Kirschner, J.A.N.2    Vlĉek, Ĉ.3
  • 11
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294–299.
    • (1994) Molecular Marine Biology and Biotechnology , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 13
    • 84943584337 scopus 로고    scopus 로고
    • Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)
    • Graham CF, Glenn TC, McArthur AG et al. (2015) Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq). Molecular Ecology Resources, 15, 1304–1315.
    • (2015) Molecular Ecology Resources , vol.15 , pp. 1304-1315
    • Graham, C.F.1    Glenn, T.C.2    McArthur, A.G.3
  • 14
    • 67349168463 scopus 로고    scopus 로고
    • DNA extraction procedures meaningfully influence qPCR-based mtDNA copy number determination
    • Guo W, Jiang L, Bhasin S, Khan SM, Swerdlow RH (2009) DNA extraction procedures meaningfully influence qPCR-based mtDNA copy number determination. Mitochondrion, 9, 261–265.
    • (2009) Mitochondrion , vol.9 , pp. 261-265
    • Guo, W.1    Jiang, L.2    Bhasin, S.3    Khan, S.M.4    Swerdlow, R.H.5
  • 16
    • 33751313616 scopus 로고    scopus 로고
    • An inexpensive, automation friendly protocol for recovering high-quality DNA
    • Ivanova NV, deWaard JR, Hebert PDN (2006) An inexpensive, automation friendly protocol for recovering high-quality DNA. Molecular Ecology Notes, 6, 998–1002.
    • (2006) Molecular Ecology Notes , vol.6 , pp. 998-1002
    • Ivanova, N.V.1    deWaard, J.R.2    Hebert, P.D.N.3
  • 17
    • 52649171830 scopus 로고    scopus 로고
    • ® 16 Instrument: a simple, robust and flexible tool for DNA purification
    • ® 16 Instrument: a simple, robust and flexible tool for DNA purification. Promega Notes, 92, 20–23.
    • (2006) Promega Notes , vol.92 , pp. 20-23
    • Kephart, D.1    Krueger, S.2    Shenoi, H.3
  • 18
    • 29144529674 scopus 로고    scopus 로고
    • Molecular investigation reveals epi/endophytic extrageneric kelp (Laminariales, Phaeophyceae) gametophytes colonizing Lessoniopsis littoralis thalli
    • Lane CE, Saunders GW (2005) Molecular investigation reveals epi/endophytic extrageneric kelp (Laminariales, Phaeophyceae) gametophytes colonizing Lessoniopsis littoralis thalli. Botanica Marina, 48, 426–436.
    • (2005) Botanica Marina , vol.48 , pp. 426-436
    • Lane, C.E.1    Saunders, G.W.2
  • 19
    • 33645552819 scopus 로고    scopus 로고
    • A multi-gene molecular investigation of the kelp (Laminariales, Phaeophyceae) supports substantial taxonomic re-organization
    • Lane CE, Mayes C, Druehl LD, Saunders GW (2006) A multi-gene molecular investigation of the kelp (Laminariales, Phaeophyceae) supports substantial taxonomic re-organization. Journal of Phycology, 42, 493–512.
    • (2006) Journal of Phycology , vol.42 , pp. 493-512
    • Lane, C.E.1    Mayes, C.2    Druehl, L.D.3    Saunders, G.W.4
  • 21
    • 66149156972 scopus 로고    scopus 로고
    • On the utility of DNA barcoding for species differentiation among brown macroalgae (Phaeophyceae) including a novel extraction protocol
    • McDevit DC, Saunders GW (2009) On the utility of DNA barcoding for species differentiation among brown macroalgae (Phaeophyceae) including a novel extraction protocol. Phycological Research, 57, 131–141.
    • (2009) Phycological Research , vol.57 , pp. 131-141
    • McDevit, D.C.1    Saunders, G.W.2
  • 22
    • 33744513096 scopus 로고    scopus 로고
    • Detecting outliers when fitting data with nonlinear regression–a new method based on robust nonlinear regression and the false discovery rate
    • Motulsky HJ, Brown RE (2006) Detecting outliers when fitting data with nonlinear regression–a new method based on robust nonlinear regression and the false discovery rate. BMC Bioinformatics, 7, 123–143.
    • (2006) BMC Bioinformatics , vol.7 , pp. 123-143
    • Motulsky, H.J.1    Brown, R.E.2
  • 24
    • 85020610320 scopus 로고    scopus 로고
    • Retrieved from
    • ® 16 Buccal Swab LEV DNA Purification Kit. Retrieved from https://www.promega.com/~/media/files/resources/protocols/technical%20manuals/101/maxwell%2016%20lev%20blood%20dna%20kit%20and%20maxwell%2016%20buccal%20swab%20lev%20dna%20purification%20kit%20protocol.pdf.
    • (2012) ® 16 Buccal Swab LEV DNA Purification Kit
  • 25
    • 85020589225 scopus 로고    scopus 로고
    • Retrieved from
    • ® DNA Clean-Up System. Retrieved from https://www.promega.com/~/media/files/resources/protocols/technical%20bulletins/0/wizard%20dna%20clean%20up%20system%20protocol.pdf.
    • (2012) ® DNA Clean-Up System
  • 27
    • 48349111155 scopus 로고    scopus 로고
    • Retrieved from
    • ® Blood & Tissue Handbook. Retrieved from https://www.qiagen.com/us/resources/download.aspx?id=6b09dfb8-6319-464d-996c-79e8c7045a50&lang=en.
    • (2006) ® Blood & Tissue Handbook
  • 28
    • 0032007661 scopus 로고    scopus 로고
    • Preparation and purification of DNA from insects for AFLP analysis
    • Reineke A, Karlovsky P, Zebitz CPW (1998) Preparation and purification of DNA from insects for AFLP analysis. Insect Molecular Biology, 7, 95–99.
    • (1998) Insect Molecular Biology , vol.7 , pp. 95-99
    • Reineke, A.1    Karlovsky, P.2    Zebitz, C.P.W.3
  • 29
    • 55249099558 scopus 로고    scopus 로고
    • The role of molecular genetics in sculpting the future of integrative biogeography
    • Riddle BR, Dawson MN, Hadly EA et al. (2008) The role of molecular genetics in sculpting the future of integrative biogeography. Progress in Physical Geography, 32, 173–202.
    • (2008) Progress in Physical Geography , vol.32 , pp. 173-202
    • Riddle, B.R.1    Dawson, M.N.2    Hadly, E.A.3
  • 31
    • 0003903343 scopus 로고    scopus 로고
    • 3rd edn, Cold Spring Harbor Laboratory Press, New York
    • Sambrook J, Russell DW (2001) Molecular Cloning, vol. 3, 3rd edn. Cold Spring Harbor Laboratory Press, New York.
    • (2001) Molecular Cloning , vol.3
    • Sambrook, J.1    Russell, D.W.2
  • 32
    • 33645780370 scopus 로고    scopus 로고
    • DNA from beach-washed shells of the ram's horn squid, Spirula spirula
    • Strugnell J, Norman M, Cooper A (2006) DNA from beach-washed shells of the ram's horn squid, Spirula spirula. Bulletin of Marine Science, 78, 389–391.
    • (2006) Bulletin of Marine Science , vol.78 , pp. 389-391
    • Strugnell, J.1    Norman, M.2    Cooper, A.3
  • 33
    • 84862537244 scopus 로고    scopus 로고
    • Retrieved from
    • Thermo Fisher Scientific (2008) NanoDrop 1000 Spectrophotometer: User Manual. Retrieved from http://www.nanodrop.com/library/nd-1000-v3.7-users-manual-8.5x11.pdf.
    • (2008) NanoDrop 1000 Spectrophotometer: User Manual
  • 35
    • 84880568499 scopus 로고    scopus 로고
    • Comparison of methods and protocols for routine DNA extraction in the DNA Bank Network
    • In, (eds, Gradstein R, Klatt S, Normann F, Weigelt P, Willmann R, Wilson R,), p., Universitätsverlag Göttingen, Göttingen, Germany
    • Zetzsche H, Klenk HP, Raubach MJ, Knebelsberger T, Gemeinholzer B (2008) Comparison of methods and protocols for routine DNA extraction in the DNA Bank Network. In: Systematics (eds Gradstein R, Klatt S, Normann F, Weigelt P, Willmann R, Wilson R), p. p354. Universitätsverlag Göttingen, Göttingen, Germany.
    • (2008) Systematics , pp. p354
    • Zetzsche, H.1    Klenk, H.P.2    Raubach, M.J.3    Knebelsberger, T.4    Gemeinholzer, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.