-
1
-
-
4644324552
-
Signaling through CD70 regulates B cell activation and IgG production
-
Arens, R., Nolte, M.A., Tesselaar, K., Heemskerk, B., Reedquist, K.A., van Lier, R.A.W., van Oers, M.H.J., Signaling through CD70 regulates B cell activation and IgG production. J. Immunol. 173 (2004), 3901–3908.
-
(2004)
J. Immunol.
, vol.173
, pp. 3901-3908
-
-
Arens, R.1
Nolte, M.A.2
Tesselaar, K.3
Heemskerk, B.4
Reedquist, K.A.5
van Lier, R.A.W.6
van Oers, M.H.J.7
-
2
-
-
84901838628
-
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
-
Ay, F., Bailey, T.L., Noble, W.S., Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts. Genome Res. 24 (2014), 999–1011.
-
(2014)
Genome Res.
, vol.24
, pp. 999-1011
-
-
Ay, F.1
Bailey, T.L.2
Noble, W.S.3
-
3
-
-
84936945257
-
Condensin-driven remodelling of X chromosome topology during dosage compensation
-
Crane, E., Bian, Q., McCord, R.P., Lajoie, B.R., Wheeler, B.S., Ralston, E.J., Uzawa, S., Dekker, J., Meyer, B.J., Condensin-driven remodelling of X chromosome topology during dosage compensation. Nature 523 (2015), 240–244.
-
(2015)
Nature
, vol.523
, pp. 240-244
-
-
Crane, E.1
Bian, Q.2
McCord, R.P.3
Lajoie, B.R.4
Wheeler, B.S.5
Ralston, E.J.6
Uzawa, S.7
Dekker, J.8
Meyer, B.J.9
-
4
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker, J., Rippe, K., Dekker, M., Kleckner, N., Capturing chromosome conformation. Science 295 (2002), 1306–1311.
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
5
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
Dixon, J.R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J.S., Ren, B., Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485 (2012), 376–380.
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
6
-
-
84923366733
-
Chromatin architecture reorganization during stem cell differentiation
-
Dixon, J.R., Jung, I., Selvaraj, S., Shen, Y., Antosiewicz-Bourget, J.E., Lee, A.Y., Ye, Z., Kim, A., Rajagopal, N., Xie, W., et al. Chromatin architecture reorganization during stem cell differentiation. Nature 518 (2015), 331–336.
-
(2015)
Nature
, vol.518
, pp. 331-336
-
-
Dixon, J.R.1
Jung, I.2
Selvaraj, S.3
Shen, Y.4
Antosiewicz-Bourget, J.E.5
Lee, A.Y.6
Ye, Z.7
Kim, A.8
Rajagopal, N.9
Xie, W.10
-
7
-
-
84971406209
-
Chromatin domains: the unit of chromosome organization
-
Dixon, J.R., Gorkin, D.U., Ren, B., Chromatin domains: the unit of chromosome organization. Mol. Cell 62 (2016), 668–680.
-
(2016)
Mol. Cell
, vol.62
, pp. 668-680
-
-
Dixon, J.R.1
Gorkin, D.U.2
Ren, B.3
-
8
-
-
33749400168
-
Chromosome conformation capture carbon copy (5C): a massively parallel solution for mapping interactions between genomic elements
-
Dostie, J., Richmond, T.A., Arnaout, R.A., Selzer, R.R., Lee, W.L., Honan, T.A., Rubio, E.D., Krumm, A., Lamb, J., Nusbaum, C., et al. Chromosome conformation capture carbon copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res. 16 (2006), 1299–1309.
-
(2006)
Genome Res.
, vol.16
, pp. 1299-1309
-
-
Dostie, J.1
Richmond, T.A.2
Arnaout, R.A.3
Selzer, R.R.4
Lee, W.L.5
Honan, T.A.6
Rubio, E.D.7
Krumm, A.8
Lamb, J.9
Nusbaum, C.10
-
9
-
-
84916880365
-
Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes
-
Dowen, J.M., Fan, Z.P., Hnisz, D., Ren, G., Abraham, B.J., Zhang, L.N., Weintraub, A.S., Schuijers, J., Lee, T.I., Zhao, K., et al. Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes. Cell 159 (2014), 374–387.
-
(2014)
Cell
, vol.159
, pp. 374-387
-
-
Dowen, J.M.1
Fan, Z.P.2
Hnisz, D.3
Ren, G.4
Abraham, B.J.5
Zhang, L.N.6
Weintraub, A.S.7
Schuijers, J.8
Lee, T.I.9
Zhao, K.10
-
10
-
-
84923823453
-
Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
-
Dryden, N.H., Broome, L.R., Dudbridge, F., Johnson, N., Orr, N., Schoenfelder, S., Nagano, T., Andrews, S., Wingett, S., Kozarewa, I., et al. Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C. Genome Res. 24 (2014), 1854–1868.
-
(2014)
Genome Res.
, vol.24
, pp. 1854-1868
-
-
Dryden, N.H.1
Broome, L.R.2
Dudbridge, F.3
Johnson, N.4
Orr, N.5
Schoenfelder, S.6
Nagano, T.7
Andrews, S.8
Wingett, S.9
Kozarewa, I.10
-
11
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489 (2012), 57–74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
12
-
-
84956604089
-
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
-
Fraser, J., Ferrai, C., Chiariello, A.M., Schueler, M., Rito, T., Laudanno, G., Barbieri, M., Moore, B.L., Kraemer, D.C., Aitken, S., et al., FANTOM Consortium. Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation. Mol. Syst. Biol., 11, 2015, 852.
-
(2015)
Mol. Syst. Biol.
, vol.11
, pp. 852
-
-
Fraser, J.1
Ferrai, C.2
Chiariello, A.M.3
Schueler, M.4
Rito, T.5
Laudanno, G.6
Barbieri, M.7
Moore, B.L.8
Kraemer, D.C.9
Aitken, S.10
-
13
-
-
84929001104
-
Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans
-
GTEx Consortium. Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans. Science 348 (2015), 648–660.
-
(2015)
Science
, vol.348
, pp. 648-660
-
-
-
14
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
Hnisz, D., Abraham, B.J., Lee, T.I., Lau, A., Saint-André, V., Sigova, A.A., Hoke, H.A., Young, R.A., Super-enhancers in the control of cell identity and disease. Cell 155 (2013), 934–947.
-
(2013)
Cell
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-André, V.5
Sigova, A.A.6
Hoke, H.A.7
Young, R.A.8
-
15
-
-
84870463249
-
HiCNorm: removing biases in Hi-C data via Poisson regression
-
Hu, M., Deng, K., Selvaraj, S., Qin, Z., Ren, B., Liu, J.S., HiCNorm: removing biases in Hi-C data via Poisson regression. Bioinformatics 28 (2012), 3131–3133.
-
(2012)
Bioinformatics
, vol.28
, pp. 3131-3133
-
-
Hu, M.1
Deng, K.2
Selvaraj, S.3
Qin, Z.4
Ren, B.5
Liu, J.S.6
-
16
-
-
84866997011
-
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
-
Imakaev, M., Fudenberg, G., McCord, R.P., Naumova, N., Goloborodko, A., Lajoie, B.R., Dekker, J., Mirny, L.A., Iterative correction of Hi-C data reveals hallmarks of chromosome organization. Nat. Methods 9 (2012), 999–1003.
-
(2012)
Nat. Methods
, vol.9
, pp. 999-1003
-
-
Imakaev, M.1
Fudenberg, G.2
McCord, R.P.3
Naumova, N.4
Goloborodko, A.5
Lajoie, B.R.6
Dekker, J.7
Mirny, L.A.8
-
17
-
-
84957850407
-
3D chromosome regulatory landscape of human pluripotent cells
-
Ji, X., Dadon, D.B., Powell, B.E., Fan, Z.P., Borges-Rivera, D., Shachar, S., Weintraub, A.S., Hnisz, D., Pegoraro, G., Lee, T.I., et al. 3D chromosome regulatory landscape of human pluripotent cells. Cell Stem Cell 18 (2016), 262–275.
-
(2016)
Cell Stem Cell
, vol.18
, pp. 262-275
-
-
Ji, X.1
Dadon, D.B.2
Powell, B.E.3
Fan, Z.P.4
Borges-Rivera, D.5
Shachar, S.6
Weintraub, A.S.7
Hnisz, D.8
Pegoraro, G.9
Lee, T.I.10
-
18
-
-
84887620842
-
A high-resolution map of the three-dimensional chromatin interactome in human cells
-
Jin, F., Li, Y., Dixon, J.R., Selvaraj, S., Ye, Z., Lee, A.Y., Yen, C.A., Schmitt, A.D., Espinoza, C.A., Ren, B., A high-resolution map of the three-dimensional chromatin interactome in human cells. Nature 503 (2013), 290–294.
-
(2013)
Nature
, vol.503
, pp. 290-294
-
-
Jin, F.1
Li, Y.2
Dixon, J.R.3
Selvaraj, S.4
Ye, Z.5
Lee, A.Y.6
Yen, C.A.7
Schmitt, A.D.8
Espinoza, C.A.9
Ren, B.10
-
19
-
-
84868336049
-
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
-
Jostins, L., Ripke, S., Weersma, R.K., Duerr, R.H., McGovern, D.P., Hui, K.Y., Lee, J.C., Schumm, L.P., Sharma, Y., Anderson, C.A., et al., International IBD Genetics Consortium (IIBDGC). Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature 491 (2012), 119–124.
-
(2012)
Nature
, vol.491
, pp. 119-124
-
-
Jostins, L.1
Ripke, S.2
Weersma, R.K.3
Duerr, R.H.4
McGovern, D.P.5
Hui, K.Y.6
Lee, J.C.7
Schumm, L.P.8
Sharma, Y.9
Anderson, C.A.10
-
20
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey, M.H., Newman, J.J., Bilodeau, S., Zhan, Y., Orlando, D.A., van Berkum, N.L., Ebmeier, C.C., Goossens, J., Rahl, P.B., Levine, S.S., et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 467 (2010), 430–435.
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
van Berkum, N.L.6
Ebmeier, C.C.7
Goossens, J.8
Rahl, P.B.9
Levine, S.S.10
-
21
-
-
84899783677
-
Epilepsy: GRIN2A mutations identified as key genetic drivers of epilepsy-aphasia spectrum disorders
-
Kingwell, K., Epilepsy: GRIN2A mutations identified as key genetic drivers of epilepsy-aphasia spectrum disorders. Nat. Rev. Neurol., 9, 2013, 541.
-
(2013)
Nat. Rev. Neurol.
, vol.9
, pp. 541
-
-
Kingwell, K.1
-
22
-
-
84923333199
-
Integrative analysis of haplotype-resolved epigenomes across human tissues
-
Leung, D., Jung, I., Rajagopal, N., Schmitt, A., Selvaraj, S., Lee, A.Y., Yen, C.A., Lin, S., Lin, Y., Qiu, Y., et al. Integrative analysis of haplotype-resolved epigenomes across human tissues. Nature 518 (2015), 350–354.
-
(2015)
Nature
, vol.518
, pp. 350-354
-
-
Leung, D.1
Jung, I.2
Rajagopal, N.3
Schmitt, A.4
Selvaraj, S.5
Lee, A.Y.6
Yen, C.A.7
Lin, S.8
Lin, Y.9
Qiu, Y.10
-
23
-
-
84895553072
-
FLRT3 is a Robo1-interacting protein that determines Netrin-1 attraction in developing axons
-
Leyva-Díaz, E., del Toro, D., Menal, M.J., Cambray, S., Susín, R., Tessier-Lavigne, M., Klein, R., Egea, J., López-Bendito, G., FLRT3 is a Robo1-interacting protein that determines Netrin-1 attraction in developing axons. Curr. Biol. 24 (2014), 494–508.
-
(2014)
Curr. Biol.
, vol.24
, pp. 494-508
-
-
Leyva-Díaz, E.1
del Toro, D.2
Menal, M.J.3
Cambray, S.4
Susín, R.5
Tessier-Lavigne, M.6
Klein, R.7
Egea, J.8
López-Bendito, G.9
-
24
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E., van Berkum, N.L., Williams, L., Imakaev, M., Ragoczy, T., Telling, A., Amit, I., Lajoie, B.R., Sabo, P.J., Dorschner, M.O., et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326 (2009), 289–293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
25
-
-
84962739232
-
PICALM rs3851179 variant confers susceptibility to Alzheimer's disease in Chinese population
-
Published online April 5, 2016
-
Liu, G., Xu, Y., Jiang, Y., Zhang, L., Feng, R., Jiang, Q., PICALM rs3851179 variant confers susceptibility to Alzheimer's disease in Chinese population. Mol. Neurobiol, 2016, 10.1007/s12035-016-9886-2 Published online April 5, 2016.
-
(2016)
Mol. Neurobiol
-
-
Liu, G.1
Xu, Y.2
Jiang, Y.3
Zhang, L.4
Feng, R.5
Jiang, Q.6
-
26
-
-
84878682420
-
The Genotype-Tissue Expression (GTEx) project
-
Lonsdale, J., Thomas, J., Salvatore, M., Phillips, R., Lo, E., Shad, S., Hasz, R., Walters, G., Garcia, F., Young, N., et al., GTEx Consortium. The Genotype-Tissue Expression (GTEx) project. Nat. Genet. 45 (2013), 580–585.
-
(2013)
Nat. Genet.
, vol.45
, pp. 580-585
-
-
Lonsdale, J.1
Thomas, J.2
Salvatore, M.3
Phillips, R.4
Lo, E.5
Shad, S.6
Hasz, R.7
Walters, G.8
Garcia, F.9
Young, N.10
-
27
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
McLean, C.Y., Bristor, D., Hiller, M., Clarke, S.L., Schaar, B.T., Lowe, C.B., Wenger, A.M., Bejerano, G., GREAT improves functional interpretation of cis-regulatory regions. Nat. Biotechnol. 28 (2010), 495–501.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
28
-
-
33846535507
-
Cell biology: chromosome territories
-
Meaburn, K.J., Misteli, T., Cell biology: chromosome territories. Nature 445 (2007), 379–781.
-
(2007)
Nature
, vol.445
, pp. 379-781
-
-
Meaburn, K.J.1
Misteli, T.2
-
29
-
-
84891478098
-
Chromatin organization and global regulation of Hox gene clusters
-
Montavon, T., Duboule, D., Chromatin organization and global regulation of Hox gene clusters. Philos. Trans. R. Soc. Lond. B Biol. Sci., 368, 2013, 20120367.
-
(2013)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.368
, pp. 20120367
-
-
Montavon, T.1
Duboule, D.2
-
30
-
-
58749109707
-
Deletion of IKZF1 and prognosis in acute lymphoblastic leukemia
-
Mullighan, C.G., Su, X., Zhang, J., Radtke, I., Phillips, L.A.A., Miller, C.B., Ma, J., Liu, W., Cheng, C., Schulman, B.A., et al. Deletion of IKZF1 and prognosis in acute lymphoblastic leukemia. N. Engl. J. Med. 360 (2009), 470–480.
-
(2009)
N. Engl. J. Med.
, vol.360
, pp. 470-480
-
-
Mullighan, C.G.1
Su, X.2
Zhang, J.3
Radtke, I.4
Phillips, L.A.A.5
Miller, C.B.6
Ma, J.7
Liu, W.8
Cheng, C.9
Schulman, B.A.10
-
31
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
Nora, E.P., Lajoie, B.R., Schulz, E.G., Giorgetti, L., Okamoto, I., Servant, N., Piolot, T., van Berkum, N.L., Meisig, J., Sedat, J., et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 485 (2012), 381–385.
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
Lajoie, B.R.2
Schulz, E.G.3
Giorgetti, L.4
Okamoto, I.5
Servant, N.6
Piolot, T.7
van Berkum, N.L.8
Meisig, J.9
Sedat, J.10
-
32
-
-
84962436609
-
Specific gene expression patterns of 108 schizophrenia-associated loci in cortex
-
Ohi, K., Shimada, T., Nitta, Y., Kihara, H., Okubo, H., Uehara, T., Kawasaki, Y., Specific gene expression patterns of 108 schizophrenia-associated loci in cortex. Schizophr. Res. 174 (2016), 35–38.
-
(2016)
Schizophr. Res.
, vol.174
, pp. 35-38
-
-
Ohi, K.1
Shimada, T.2
Nitta, Y.3
Kihara, H.4
Okubo, H.5
Uehara, T.6
Kawasaki, Y.7
-
33
-
-
84878860751
-
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
-
Phillips-Cremins, J.E., Sauria, M.E.G., Sanyal, A., Gerasimova, T.I., Lajoie, B.R., Bell, J.S.K., Ong, C.-T., Hookway, T.A., Guo, C., Sun, Y., et al. Architectural protein subclasses shape 3D organization of genomes during lineage commitment. Cell 153 (2013), 1281–1295.
-
(2013)
Cell
, vol.153
, pp. 1281-1295
-
-
Phillips-Cremins, J.E.1
Sauria, M.E.G.2
Sanyal, A.3
Gerasimova, T.I.4
Lajoie, B.R.5
Bell, J.S.K.6
Ong, C.-T.7
Hookway, T.A.8
Guo, C.9
Sun, Y.10
-
34
-
-
84919949716
-
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
-
Rao, S.S., Huntley, M.H., Durand, N.C., Stamenova, E.K., Bochkov, I.D., Robinson, J.T., Sanborn, A.L., Machol, I., Omer, A.D., Lander, E.S., et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159 (2014), 1665–1680.
-
(2014)
Cell
, vol.159
, pp. 1665-1680
-
-
Rao, S.S.1
Huntley, M.H.2
Durand, N.C.3
Stamenova, E.K.4
Bochkov, I.D.5
Robinson, J.T.6
Sanborn, A.L.7
Machol, I.8
Omer, A.D.9
Lander, E.S.10
-
35
-
-
0035760903
-
The BCL11 gene family: involvement of BCL11A in lymphoid malignancies
-
Satterwhite, E., Sonoki, T., Willis, T.G., Harder, L., Nowak, R., Arriola, E.L., Liu, H., Price, H.P., Gesk, S., Steinemann, D., et al. The BCL11 gene family: involvement of BCL11A in lymphoid malignancies. Blood 98 (2001), 3413–3420.
-
(2001)
Blood
, vol.98
, pp. 3413-3420
-
-
Satterwhite, E.1
Sonoki, T.2
Willis, T.G.3
Harder, L.4
Nowak, R.5
Arriola, E.L.6
Liu, H.7
Price, H.P.8
Gesk, S.9
Steinemann, D.10
-
36
-
-
84890504911
-
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
-
Seitan, V.C., Faure, A.J., Zhan, Y., McCord, R.P., Lajoie, B.R., Ing-Simmons, E., Lenhard, B., Giorgetti, L., Heard, E., Fisher, A.G., et al. Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments. Genome Res. 23 (2013), 2066–2077.
-
(2013)
Genome Res.
, vol.23
, pp. 2066-2077
-
-
Seitan, V.C.1
Faure, A.J.2
Zhan, Y.3
McCord, R.P.4
Lajoie, B.R.5
Ing-Simmons, E.6
Lenhard, B.7
Giorgetti, L.8
Heard, E.9
Fisher, A.G.10
-
37
-
-
84890023970
-
Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
-
Selvaraj, S., R Dixon, J., Bansal, V., Ren, B., Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing. Nat. Biotechnol. 31 (2013), 1111–1118.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1111-1118
-
-
Selvaraj, S.1
R Dixon, J.2
Bansal, V.3
Ren, B.4
-
38
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
Sexton, T., Yaffe, E., Kenigsberg, E., Bantignies, F., Leblanc, B., Hoichman, M., Parrinello, H., Tanay, A., Cavalli, G., Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148 (2012), 458–472.
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
Yaffe, E.2
Kenigsberg, E.3
Bantignies, F.4
Leblanc, B.5
Hoichman, M.6
Parrinello, H.7
Tanay, A.8
Cavalli, G.9
-
39
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen, Y., Yue, F., McCleary, D.F., Ye, Z., Edsall, L., Kuan, S., Wagner, U., Dixon, J., Lee, L., Lobanenkov, V.V., et al. A map of the cis-regulatory sequences in the mouse genome. Nature 488 (2012), 116–120.
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
-
40
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
-
Simonis, M., Klous, P., Splinter, E., Moshkin, Y., Willemsen, R., de Wit, E., van Steensel, B., de Laat, W., Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat. Genet. 38 (2006), 1348–1354.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1348-1354
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
de Wit, E.6
van Steensel, B.7
de Laat, W.8
-
41
-
-
84897855294
-
Obesity-associated variants within FTO form long-range functional connections with IRX3
-
Smemo, S., Tena, J.J., Kim, K.-H., Gamazon, E.R., Sakabe, N.J., Gómez-Marín, C., Aneas, I., Credidio, F.L., Sobreira, D.R., Wasserman, N.F., et al. Obesity-associated variants within FTO form long-range functional connections with IRX3. Nature 507 (2014), 371–375.
-
(2014)
Nature
, vol.507
, pp. 371-375
-
-
Smemo, S.1
Tena, J.J.2
Kim, K.-H.3
Gamazon, E.R.4
Sakabe, N.J.5
Gómez-Marín, C.6
Aneas, I.7
Credidio, F.L.8
Sobreira, D.R.9
Wasserman, N.F.10
-
42
-
-
84890566970
-
Cohesin-mediated interactions organize chromosomal domain architecture
-
Sofueva, S., Yaffe, E., Chan, W.-C., Georgopoulou, D., Vietri Rudan, M., Mira-Bontenbal, H., Pollard, S.M., Schroth, G.P., Tanay, A., Hadjur, S., Cohesin-mediated interactions organize chromosomal domain architecture. EMBO J. 32 (2013), 3119–3129.
-
(2013)
EMBO J.
, vol.32
, pp. 3119-3129
-
-
Sofueva, S.1
Yaffe, E.2
Chan, W.-C.3
Georgopoulou, D.4
Vietri Rudan, M.5
Mira-Bontenbal, H.6
Pollard, S.M.7
Schroth, G.P.8
Tanay, A.9
Hadjur, S.10
-
43
-
-
84951567954
-
CTCF-mediated human 3D genome architecture reveals chromatin topology for transcription
-
Tang, Z., Luo, O.J., Li, X., Zheng, M., Zhu, J.J., Szalaj, P., Trzaskoma, P., Magalska, A., Wlodarczyk, J., Ruszczycki, B., et al. CTCF-mediated human 3D genome architecture reveals chromatin topology for transcription. Cell 163 (2015), 1611–1627.
-
(2015)
Cell
, vol.163
, pp. 1611-1627
-
-
Tang, Z.1
Luo, O.J.2
Li, X.3
Zheng, M.4
Zhu, J.J.5
Szalaj, P.6
Trzaskoma, P.7
Magalska, A.8
Wlodarczyk, J.9
Ruszczycki, B.10
-
44
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
Roadmap Epigenomics Consortium, Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., et al. Integrative analysis of 111 reference human epigenomes. Nature 518 (2015), 317–330.
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
Kundaje, A.1
Meuleman, W.2
Ernst, J.3
Bilenky, M.4
Yen, A.5
Heravi-Moussavi, A.6
Kheradpour, P.7
Zhang, Z.8
Wang, J.9
-
45
-
-
84924533047
-
Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture
-
Vietri Rudan, M., Barrington, C., Henderson, S., Ernst, C., Odom, D.T., Tanay, A., Hadjur, S., Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture. Cell Rep. 10 (2015), 1297–1309.
-
(2015)
Cell Rep.
, vol.10
, pp. 1297-1309
-
-
Vietri Rudan, M.1
Barrington, C.2
Henderson, S.3
Ernst, C.4
Odom, D.T.5
Tanay, A.6
Hadjur, S.7
-
46
-
-
84960114991
-
A hidden Markov random field based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data
-
Xu, Z., Zhang, G., Jin, F., Chen, M., Furey, T.S., Sullivan, P.F., Qin, Z., Hu, M., Li, Y., A hidden Markov random field based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data. Bioinformatics 32 (2015), 650–656.
-
(2015)
Bioinformatics
, vol.32
, pp. 650-656
-
-
Xu, Z.1
Zhang, G.2
Jin, F.3
Chen, M.4
Furey, T.S.5
Sullivan, P.F.6
Qin, Z.7
Hu, M.8
Li, Y.9
-
47
-
-
84990924654
-
FastHiC: a fast and accurate algorithm to detect long-range chromosomal interactions from Hi-C data
-
Xu, Z., Zhang, G., Wu, C., Li, Y., Hu, M., FastHiC: a fast and accurate algorithm to detect long-range chromosomal interactions from Hi-C data. Bioinformatics 32 (2016), 2692–2695.
-
(2016)
Bioinformatics
, vol.32
, pp. 2692-2695
-
-
Xu, Z.1
Zhang, G.2
Wu, C.3
Li, Y.4
Hu, M.5
-
48
-
-
80054984337
-
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
-
Yaffe, E., Tanay, A., Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nat. Genet. 43 (2011), 1059–1065.
-
(2011)
Nat. Genet.
, vol.43
, pp. 1059-1065
-
-
Yaffe, E.1
Tanay, A.2
-
49
-
-
79952188025
-
Ancestry and pharmacogenomics of relapse in acute lymphoblastic leukemia
-
Yang, J.J., Cheng, C., Devidas, M., Cao, X., Fan, Y., Campana, D., Yang, W., Neale, G., Cox, N.J., Scheet, P., et al. Ancestry and pharmacogenomics of relapse in acute lymphoblastic leukemia. Nat. Genet. 43 (2011), 237–241.
-
(2011)
Nat. Genet.
, vol.43
, pp. 237-241
-
-
Yang, J.J.1
Cheng, C.2
Devidas, M.3
Cao, X.4
Fan, Y.5
Campana, D.6
Yang, W.7
Neale, G.8
Cox, N.J.9
Scheet, P.10
-
50
-
-
84892934183
-
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
-
Zuin, J., Dixon, J.R., van der Reijden, M.I., Ye, Z., Kolovos, P., Brouwer, R.W., van de Corput, M.P., van de Werken, H.J., Knoch, T.A., van IJcken, W.F., et al. Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells. Proc. Natl. Acad. Sci. U S A 111 (2014), 996–1001.
-
(2014)
Proc. Natl. Acad. Sci. U S A
, vol.111
, pp. 996-1001
-
-
Zuin, J.1
Dixon, J.R.2
van der Reijden, M.I.3
Ye, Z.4
Kolovos, P.5
Brouwer, R.W.6
van de Corput, M.P.7
van de Werken, H.J.8
Knoch, T.A.9
van IJcken, W.F.10
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