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Volumn 27, Issue 6, 2016, Pages 4075-4077

Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae:Laeliinae), a Neotropical rupiculous species

Author keywords

Espinha o; next generation sequencing; orchid; plastid genome; rock outcrop

Indexed keywords

MOLECULAR MARKER; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; RIBOSOME PROTEIN; RIBOSOME RNA; TRANSFER RNA;

EID: 85003727756     PISSN: 24701394     EISSN: 24701408     Source Type: Journal    
DOI: 10.3109/19401736.2014.1003850     Document Type: Article
Times cited : (11)

References (16)
  • 2
    • 84857188863 scopus 로고    scopus 로고
    • Artemis: An integrated platform for visualization and analysis of highthroughput sequence-based experimental data
    • Carver T, Harris SR, Berriman M, Parkhill J, McQuillan JA. (2012). Artemis:An integrated platform for visualization and analysis of highthroughput sequence-based experimental data. Bioinformatics 28:464–9
    • (2012) Bioinformatics , vol.28 , pp. 464-469
    • Carver, T.1    Harris, S.R.2    Berriman, M.3    Parkhill, J.4    McQuillan, J.A.5
  • 3
    • 26044447606 scopus 로고    scopus 로고
    • Classification of Orchidaceae in the age of DNA data
    • Chase MW. (2005). Classification of Orchidaceae in the age of DNA data. Curtis’s Bot Mag 22:2–7
    • (2005) Curtis’s Bot Mag , vol.22 , pp. 2-7
    • Chase, M.W.1
  • 4
  • 5
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 7
    • 84860137960 scopus 로고    scopus 로고
    • The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids
    • Jheng C-F, Chen T-C, Lin J-Y, Chen T-C, Wu W-L, Chang C-C. (2012). The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids. Plant Sci 190:62–73
    • (2012) Plant Sci , vol.190 , pp. 62-73
    • Jheng, C.-F.1    Chen, T.-C.2    Lin, J.-Y.3    Chen, T.-C.4    Wu, W.-L.5    Chang, C.-C.6
  • 8
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR, (1997). tRNAscan-SE:A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955–64
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 9
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg S. (2012). Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357–9
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.2
  • 10
    • 84902578369 scopus 로고    scopus 로고
    • Comparative chloroplast genomes of photosynthetic orchids: Insights into evolution of the orchidaceae and development of molecular markers for phylogenetic applications
    • Luo J, Hou B-W, Niu Z-T, Liu W, Xue Q-Y, Ding X-Y. (2014). Comparative chloroplast genomes of photosynthetic orchids:Insights into evolution of the orchidaceae and development of molecular markers for phylogenetic applications. PloS One 9:e99016
    • (2014) PloS One , vol.9 , pp. e99016
    • Luo, J.1    Hou, B.-W.2    Niu, Z.-T.3    Liu, W.4    Xue, Q.-Y.5    Ding, X.-Y.6
  • 13
    • 16244384217 scopus 로고    scopus 로고
    • An overview of the phylogenetic relationships within Epidendroideae inferred from multiple DNA regions and recircumscription of Epidendreae and Arethuseae (Orchidaceae)
    • Van den Berg C, Goldman DH, Freudenstein JV, Pridgeon AM, Cameron KM, Chase MW. (2005). An overview of the phylogenetic relationships within Epidendroideae inferred from multiple DNA regions and recircumscription of Epidendreae and Arethuseae (Orchidaceae). Am J Bot 92:613–24
    • (2005) Am J Bot , vol.92 , pp. 613-624
    • Van den Berg, C.1    Goldman, D.H.2    Freudenstein, J.V.3    Pridgeon, A.M.4    Cameron, K.M.5    Chase, M.W.6
  • 14
    • 68849103418 scopus 로고    scopus 로고
    • A phylogenetic study of Laeliinae (Orchidaceae) based on combined nuclear and plastid DNA sequences
    • Van den Berg C, Higgins WE, Dressler RL, Whitten WM, Soto-Arenas M, Chase MW. (2009). A phylogenetic study of Laeliinae (Orchidaceae) based on combined nuclear and plastid DNA sequences. Ann Bot 104:417–30
    • (2009) Ann Bot , vol.104 , pp. 417-430
    • Van den Berg, C.1    Higgins, W.E.2    Dressler, R.L.3    Whitten, W.M.4    Soto-Arenas, M.5    Chase, M.W.6
  • 15
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL. (2004). Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252–5
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 16
    • 84876165796 scopus 로고    scopus 로고
    • Complete chloroplast genome of the genus Cymbidium: Lights into the species identification, phylogenetic implications and population genetic analyses
    • Yang J-B, Tang M, Li H-T, Zhang Z-R, Li D-Z. (2013). Complete chloroplast genome of the genus Cymbidium:Lights into the species identification, phylogenetic implications and population genetic analyses. BMC Evol Biol 13:84
    • (2013) BMC Evol Biol , vol.13 , pp. 84
    • Yang, J.-B.1    Tang, M.2    Li, H.-T.3    Zhang, Z.-R.4    Li, D.-Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.