A phylogenetic study of Laeliinae (Orchidaceae) based on combined nuclear and plastid DNA sequences

Annals of Botany

Volumn 104, Issue 3, 2009, Pages 417-430

  Van Den Berg, Cássio ^a   Higgins, Wesley E ^b   Dressler, Robert L ^c   Whitten, W Mark ^c   Soto Arenas, Miguel A ^d   Chase, Mark W ^e  

^a DEPARTAMENTO DE CIÊNCIAS BIOLÓGICAS   (Brazil)

^b MARIE SELBY BOTANICAL GARDENS   (United States)

^c UNIVERSITY OF FLORIDA   (United States)

^d INSTITUTO DE ECOLOGÍA   (Mexico)

^e JODRELL LABORATORY   (United Kingdom)

Author keywords

ITS; Laeliinae; MatK; Orchidaceae; TrnL intron; TrnL F spacer

Indexed keywords

PLANT DNA;

BAYESIAN ANALYSIS; DIVERGENCE; DNA; HYBRIDIZATION; MONOCOTYLEDON; NEOTROPICAL REGION; PARSIMONY ANALYSIS; PHYLOGENETICS; POLLINATION; RELATEDNESS; TAXONOMY;

ARTICLE; BAYES THEOREM; CELL NUCLEUS; CLASSIFICATION; GENETIC DATABASE; GENETICS; NUCLEOTIDE SEQUENCE; ORCHIDACEAE; PHYLOGENY; PLASTID;

BASE SEQUENCE; BAYES THEOREM; CELL NUCLEUS; DATABASES, GENETIC; DNA, PLANT; ORCHIDACEAE; PHYLOGENY; PLASTIDS;

LAELIINAE; ORCHIDACEAE;

EID: 68849103418     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcp101     Document Type: Article

References (58)

1. Adams H, Anderson E. 1958. A conspectus of hybridization in the Orchidaceae. Evolution 12: 512-518.
2. Azevedo CO, Borba EL, van den Berg C. 2006. Evidence of natural hybridization and introgression in Bulbophyllum involutum Borba, Semir & Barros and B. weddellii (Lindl.) Rchb.f. (Orchidaceae) im the Chapada Diamantina, Brazil, by using allozyme markers. Revista Brasileira de Botânica 29: 415-421.
3. Baker RK. 1972. Foliar anatomy of the Laeliinae (Orchidaceae). PhD Thesis, Washington University, St Louis.
4. Bentham G. 1881. Notes on Orchideae. Journal of the Linnaean Society 18: 281-360.
5. van den Berg C, Chase MW. 2000. Nomenclatural notes on Laeliinae-I. Lindleyana 15: 115-119.
6. van den Berg C, Chase MW. 2001. Nomenclatural notes on Laeliinae. II. Additional combinations and notes. Lindleyana 16: 109-112.
7. van den Berg C, Chase MW. 2004. A chronological view of Laeliinae taxonomical history. Orchid Digest 68: 226-254.van den Berg C, Chase MW. 2005. Nomenclatural notes on Laeliinae. IV. New combinations in Laelia and Sophronitis. Kew Bulletin 59: 565-567.
8. van den Berg C, Higgins WE, Dressler RL, et al. 2000. A phylogenetic analysis of Laeliinae (Orchidaceae) based on sequence data from internal transcribed spacers (ITS) of nuclear ribosomal DNA. Lindleyana 15: 96-114.
9. van den Berg C, Goldman DH, Freudenstein JV, Pridgeon AM, Cameron KM, Chase MW. 2005. An overview of the phylogenetic relationships within Epidendroideae (Orchidaceae) inferred from multiple DNA regions and recircumscription of Epidendreae and Arethuseae (Orchidaceae). American Journal of Botany 92: 613-624.
10. Blumenschein A. 1961. Estudos citolo'gicos nas orquI'deas. In: Brieger FG. ed. Atas do Primeiro Congresso Sul-Americano de Gene'tica. Piracicaba: Cadeira de Citologia e Gene'tica Gerald a Escola Superior de Agricultura 'Luiz de Queiroz', 161-163.
11. Borba EL, Braga PIS. 2003. Biologia reprodutiva de Pseudolaelia corcovadensis (Orchidaceae): melitofilia e autoimcompatibilidade em uma Laeliinae basal. Revista Brasileira de Botânica 26: 541-549.
12. Borba EL, Semir J. 1998. Bulbophyllum × cipoense (Orchidaceae), a new natural hybrid from the Brazilian 'campos rupestres': description and biology. Lindleyana 13: 113-120.
13. Brieger FG. 1976. Subtribus Epidendrinae. In: Brieger FG, Maatsch R, Senghas K eds. Schlechter's Die Orchideen, 3rd edn. Berlin: Paul Parey, 460-635.
14. Cameron KM, Chase MW, Whitten WM, et al. 1999. A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences. American Journal of Botany 86: 208-224.
15. ChaseMW, Hills HG. 1991. Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40: 215-220.
16. Dodson CH. 1965. Agentes de polinizacio'n e su influencia sobre la evolucio'n en la famI'lia Orchidaceae. Iquitos: Universidad Nacional de la Amazonia Peruana, Instituto General de Investigaciones.
17. Dodson CH, Frymire GP. 1961. Natural pollination of orchids. Missouri Botanical Garden Bulletin 49: 133-152.
18. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin of the Botanical Society of America 19: 11-15.
19. Dressler RL. 1960. Nomenclatural notes on Orchidaceae I. Taxon 9: 213-214.
20. Dressler RL. 1981. The orchids: natural history and classification. Cambridge, MA: Harvard University Press.
21. Dressler RL. 1990. The major clades of the Orchidaceae- Epidendroideae. Lindleyana 5: 117-125.
22. Dressler RL. 1993. Phylogeny and classification of the orchid family. Portland, OR: Dioscorides Press.
23. Dressler RL, Whitten WM, Williams NH. 2004. Phylogenetic relationships of Scaphyglottis and related genera (Laeliinae: Orchidaceae) based on nrDNA ITS sequence data. Brittonia 56: 58-66.
24. Erixon P, Svennblad B, Britton T, Oxelman B. 2003. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Systematic Biology 52: 665-673.
25. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
26. Fitch WM. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 20: 406-416.
27. Freudenstein JV, Senyo DM, Chase MW. 2000. Mitochondrial DNA and relationships in the Orchidaceae. In: Wilson KL, Morrison DA . eds. Monocots: systematics and evolution. Melbourne: CSIRO Publishing, 421-429.
28. Freudenstein JV, van den Berg C, Goldman DH, Kores PJ, Molvray M, Chase MW. 2004. An expanded plastid DNA phylogeny of the Orchidaceae and analysis of jackknife branch support strategy. American Journal of Botany 91: 149-157.
29. Goldman DH, Freudenstein JV, Kores PJ, et al. 2001. Phylogenetics of Arethuseae (Orchidaceae) based on plastid matK and rbcL sequences. Systematic Botany 26: 670-695.
30. Hágsater E, Soto-Arena MA. 2005. Epidendrum In: Pridgeon AM, Cribb PJ, Chase MW, Rasmussen FN eds. Genera orchidacearum, Vol. 4. Oxford: Oxford University Press, 236-251.
31. Higgins WE. 1997. A reconsideration of the genus Prosthechea (Orchidaceae). Phytologia 82: 370-383.
32. Higgins WE, van den Berg C, Whitten WM. 2003. A combined molecular phylogeny of Encyclia (Orchidaceae) and relationships within Laeliinae. Selbyana 24: 165-179.
33. Johnson LA, Soltis DE. 1994. matK DNA sequences and phylogenetic reconstruction in Saxifragaceae s.s. Systematic Botany 19: 143-156.
34. Johnson LA, Soltis DE. 1995. Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Annals of the Missouri Botanical Garden 82: 149-175.
35. Kress WJ, Prince LM, Williams KJ. 2002. The phylogeny and a new classification of the gingers (Zigiberaceae): evidence from molecular data. American Journal of Botany 89: 1682-1696.
36. Matias LQ, Braga PIS, Freire AG. 1996. Biologia reprodutiva de Constantia cipoensis Porto & Brade, endêmica da Serra do Cipo'. Revista Brasileira de Botânica 19: 119-225.
37. Molvray M, Kores PJ, Chase MW. 2000. Polyphyly of mycoheterotrophic orchids and functional influences on floral and molecular characters. In: Wilson KL, Morrison DA. eds. Monocots: systematics and evolution. Melbourne: CSIRO Publishing, 441-448.
38. Neyland R, Urbatsch LE. 1996. Phylogeny of subfamily Epidendroideae (Orchidaceae) inferred from ndhF chloroplast gene sequences. American Journal of Botany 83: 1195-1206.
39. Nylander JAA. 2004. MRMODELTEST v2. Program distributed by the author. Uppsala: Evolutionary Biology Centre, Uppsala University.
40. Pabst GFJ, Dungs F. 1975. Orchidaceae Brasilienses. V. 1. Hildesheim: Brücke-Verlag Kurt Schmersow.
41. Pabst GFJ, Dungs F. 1977. Orchidaceae Brasilienses V. 2. Hildesheim: Brücke-Verlag Kurt Schmersow.
42. Pfitzer E. 1889. Orchidaceae. II.B.13. Monandrae-Laeliinae, II.B.13.a. Monandrae-Laeliinae-Ponereae. In: Engler A, Prantl K eds. Die Natürlichen Pflanzenfamilien Ergaenzungsheft. Leipzig: Engelmann, 52-222.
43. van der Pijl L, Dodson CH. 1969. Orchid flowers: their pollination and evolution. Coral Gables, FL: University of Miami Press.
44. Pires MFO, Semir J, Pinna GFAM, Felix LP. 2003. Taxonomic separation of the genera Prosthechea and Encyclia (Laeliinae: Orchidaceae) using leaf and root anatomical features. Botanical Journal of the Linnean Society 143: 293-303.
45. Pridgeon AM, Solano R, Chase MW. 2001. Phylogenetic relationships in Pleurothallidinae (Orchidaceae): combined evidence from nuclear and plastid DNA sequences. American Journal of Botany 88: 2286-2308.
46. Ronquist F, Huelsenbeck JP. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
47. Ronquist F, Huelsenbeck JP, van der Mark P. 2005. MRBAYES 3.1. Manual. Distributed with the program by the authors.
48. Schlechter R. 1926. Das System der Orchidaceae. Notizblatt des Botanischen Gartens und Museums zu Berlin-Dahlem 9: 563-591.
49. Sheahan MC, Chase MW. 2000. Phylogenetic relationships within Zygophyllaceae based on DNA sequences of three plastid regions, with special emphasis on Zygophylloideae. Systematic Botany 25: 371-384.
50. Smidt EC, Silva-Pereira V, Borba EL. 2006. Reproductive biology of two Cattleya (Orchidaceae) species endemic to northeastern Brazil. Plant Species Biology 21: 85-91.
51. Soto-Arenas MA. 2005. Laelia. In: Pridgeon AM, Cribb PJ, Chase MW, Rasmussen FN. eds. Genera Orchidacearum, Vol. 4. Oxford: Oxford University Press, 265-271.
52. Soto-Arenas MA, Salazar G, van den Berg C. 2007. New combinations in Domingoa, Homalopetalum (Orchidaceae: Laeliinae) and Nemaconia (Orchidaceae: Ponerinae). Neodiversity 2: 7-9.
53. Swofford DL. 1998. PAUP* - Phylogenetic analysis using parsimony (*and other methods) version 4.0. Sunderland, MA: Sinauer Associates.
54. Szlachetko DL. 1995. Systema orchidalium. Fragmenta Floristica et Geobotanica Supplementum 3: 1-152.
55. Taberlet P, Gielly L, Pautou G, Bouvet J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
56. Tanaka R, Kamemoto H. 1984. Chromosomes in orchids: counting and numbers. In: Arditti J ed. Orchid biology: reviews and perspectives, Vol. 3. Ithaca, NY: Comstock Publishing Associates, 323-410.
57. Verola CF. 2008. Estudos biossistemáticos em espe'cies de Hoffmannseggella H.G. Jones (Orchidaceae:Laeliinae) ocorrentes nos complexos rupestres de altitude. PhD Thesis, Universidade Estadual de Campinas, Brazil.
58. Withner CL. 1990. The cattleyas and their relatives. Vol. 2. The laelias. Portland, OR: Timber Press.