Draft genome sequence of marine-derived actinomycete Nocardiopsis sp. strain TP-A0876, a producer of polyketide pyrones

Genome Announcements

Volumn 2, Issue 4, 2014, Pages

  Komaki, Hisayuki ^a   Ichikawa, Natsuko ^b   Hosoyama, Akira ^b   Fujita, Nobuyuki ^b   Igarashi, Yasuhiro ^c  

^a NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^b NBRC   (Japan)

^c TOYAMA PREFECTURAL UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85003550768     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00665-14     Document Type: Article

References (14)

1. Fenical W, Jensen PR. 2006. Developing a new resource for drug discovery: marine actinomycete bacteria. Nat. Chem. Biol. 2:666-673. http://dx.doi.org/10.1038/nchembio841.
2. Jensen PR, Mincer TJ, Williams PG, Fenical W. 2005. Marine actinomycete diversity and natural product discovery. Antonie Van Leeuwenhoek 87:43-48. http://dx.doi.org/10.1007/s10482-004-6540-1.
3. Lam KS. 2006. Discovery of novel metabolites from marine actinomycetes. Curr. Opin. Microbiol. 9:245-251. http://dx.doi.org/10.1016/j.mib.2006.03.004.
4. Ohtsubo Y, Maruyama F, Mitsui H, Nagata Y, Tsuda M. 2012. Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader. J. Bacteriol. 194:6970-6971. http://dx.doi.org/10.1128/JB.01848-12.
5. Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ. 2010 Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. http://dx.doi.org/10.1186/1471-2105-11-119.
6. Richter M, Rosselló-Móra R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. U. S. A. 106: 19126-19131. http://dx.doi.org/10.1073/pnas.0906412106.
7. Li HW, Zhi XY, Yao JC, Zhou Y, Tang SK, Klenk HP, Zhao J, Li WJ. 2013 Comparative genomic analysis of the genus Nocardiopsis provides new insights into its genetic mechanisms of environmental adaptability. PLoS One 8:e61528. http://dx.doi.org/10.1371/journal.pone.0061528.
8. Qiao J, Chen L, Li Y, Wang J, Zhang W, Chen S. 2012. Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165, associated with honeybees. J. Bacteriol. 194:6358-6359. http://dx.doi.org/10.1128/JB.01522-12.
9. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM. 2007. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int. J. Syst. Evol. Microbiol. 57: 81-91. http://dx.doi.org/10.1099/ijs.0.64483-0.
10. Lin Z, Torres JP, Ammon MA, Marett L, Teichert RW, Reilly CA, Kwan JC, Hughen RW, Flores M, Tianero MD, Peraud O, Cox JE, Light AR, Villaraza AJ, Haygood MG, Concepcion GP, Olivera BM, Schmidt EW. 2013 A bacterial source for mollusk pyrone polyketides. Chem. Biol. 20: 73-81. http://dx.doi.org/10.1016/j.chembiol.2012.10.019.
11. Fu P, Liu P, Qu H, Wang Y, Chen D, Wang H, Li J, Zhu W. 2011. α-pyrones and diketopiperazine derivatives from the marine-derived actinomycete Nocardiopsis dassonvillei HR10-5. J. Nat. Prod. 74:2219-2223. http://dx.doi.org/10.1021/np200597m.
12. Kim MC, Kwon OW, Park JS, Kim SY, Kwon HC. 2013. Nocapyrones H-J, 3, 6-disubstituted alpha-pyrones from the marine actinomycete Nocardiopsis sp. KMF-001. Chem. Pharm. Bull. (Tokyo) 61:511-515. http://dx.doi.org/10.1248/cpb.c12-00956.
13. Schneemann I, Ohlendorf B, Zinecker H, Nagel K, Wiese J, ImhoffJF. 2010 Nocapyrones A-D, gamma-pyrones from a Nocardiopsis strain isolated from the marine sponge Halichondria panicea. J. Nat. Prod. 73: 1444-1447. http://dx.doi.org/10.1021/np100312f.
14. Kim Y, Ogura H, Akasaka K, Oikawa T, Matsuura N, Imada C, Yasuda H, Igarashi Y. Nocapyrones: α-and γ-pyrones from a marine-derived Nocardiopsis sp. Mar. Drugs, in press.