-
1
-
-
79951694175
-
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
-
Aird, D., Ross, M.G., Chen, W.S., et al. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol, 12, 2011, R18.
-
(2011)
Genome Biol
, vol.12
, pp. R18
-
-
Aird, D.1
Ross, M.G.2
Chen, W.S.3
-
2
-
-
14644418434
-
Low copy number DNA template can render polymerase chain reaction error prone in a sequence-dependent manner
-
Akbari, M., Hansen, M.D., Halgunset, J., et al. Low copy number DNA template can render polymerase chain reaction error prone in a sequence-dependent manner. J Mol Diagn 7 (2005), 36–39.
-
(2005)
J Mol Diagn
, vol.7
, pp. 36-39
-
-
Akbari, M.1
Hansen, M.D.2
Halgunset, J.3
-
3
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley, D.R., Balasubramanian, S., Swerdlow, H.P., et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456 (2008), 53–59.
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
-
4
-
-
84861214013
-
Generalized DNA barcode design based on Hamming codes
-
e36852
-
Bystrykh, L.V., Generalized DNA barcode design based on Hamming codes. PLoS One, 7, 2012, e36852.
-
(2012)
PLoS One
, vol.7
-
-
Bystrykh, L.V.1
-
5
-
-
70349910898
-
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
-
Degner, J.F., Marioni, J.C., Pai, A.A., et al. Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. Bioinformatics 25 (2009), 3207–3212.
-
(2009)
Bioinformatics
, vol.25
, pp. 3207-3212
-
-
Degner, J.F.1
Marioni, J.C.2
Pai, A.A.3
-
6
-
-
34248588074
-
Proteomics in neurosciences
-
Drabik, A., Bierczynska-Krzysik, A., Bodzon-Kulakowska, A., et al. Proteomics in neurosciences. Mass Spectrom Rev 26 (2007), 432–450.
-
(2007)
Mass Spectrom Rev
, vol.26
, pp. 432-450
-
-
Drabik, A.1
Bierczynska-Krzysik, A.2
Bodzon-Kulakowska, A.3
-
7
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid, J., Fehr, A., Gray, J., et al. Real-time DNA sequencing from single polymerase molecules. Science 323 (2009), 133–138.
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
-
8
-
-
84902515726
-
The critical need for defining preclinical biomarkers in Alzheimer's disease
-
Fiandaca, M.S., Mapstone, M.E., Cheema, A.K., et al. The critical need for defining preclinical biomarkers in Alzheimer's disease. Alzheimers Dement 10 (2014), S196–S212.
-
(2014)
Alzheimers Dement
, vol.10
, pp. S196-S212
-
-
Fiandaca, M.S.1
Mapstone, M.E.2
Cheema, A.K.3
-
9
-
-
70449371390
-
The challenges of sequencing by synthesis
-
Fuller, C.W., Middendorf, L.R., Benner, S.A., et al. The challenges of sequencing by synthesis. Nat Biotechnol 27 (2009), 1013–1023.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 1013-1023
-
-
Fuller, C.W.1
Middendorf, L.R.2
Benner, S.A.3
-
10
-
-
84875737598
-
Using population admixture to help complete maps of the human genome
-
Genovese, G., Handsaker, R.E., Li, H., et al. Using population admixture to help complete maps of the human genome. Nat Genet 45:406–414 (2013), 414e401–414e402.
-
(2013)
Nat Genet
, vol.45
, Issue.406-414
, pp. 414e401-414e402
-
-
Genovese, G.1
Handsaker, R.E.2
Li, H.3
-
11
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
Glenn, T.C., Field guide to next-generation DNA sequencers. Mol Ecol Resour 11 (2011), 759–769.
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
12
-
-
83555173382
-
Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants
-
Gundry, M., Vijg, J., Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants. Mutat Res 729 (2012), 1–15.
-
(2012)
Mutat Res
, vol.729
, pp. 1-15
-
-
Gundry, M.1
Vijg, J.2
-
13
-
-
36549021060
-
Genome-wide in situ exon capture for selective resequencing
-
Hodges, E., Xuan, Z., Balija, V., et al. Genome-wide in situ exon capture for selective resequencing. Nat Genet 39 (2007), 1522–1527.
-
(2007)
Nat Genet
, vol.39
, pp. 1522-1527
-
-
Hodges, E.1
Xuan, Z.2
Balija, V.3
-
14
-
-
28444495886
-
Cell-free cloning using phi29 DNA polymerase
-
Hutchison, C.A. 3rd, Smith, H.O., Pfannkoch, C., et al. Cell-free cloning using phi29 DNA polymerase. Proc Natl Acad Sci U S A 102 (2005), 17332–17336.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 17332-17336
-
-
Hutchison, C.A.1
Smith, H.O.2
Pfannkoch, C.3
-
15
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka, J., Kapitonov, V.V., Pavlicek, A., et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110 (2005), 462–467.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
-
16
-
-
77957272020
-
Challenges of sequencing human genomes
-
Koboldt, D.C., Ding, L., Mardis, E.R., et al. Challenges of sequencing human genomes. Brief Bioinform 11 (2010), 484–498.
-
(2010)
Brief Bioinform
, vol.11
, pp. 484-498
-
-
Koboldt, D.C.1
Ding, L.2
Mardis, E.R.3
-
17
-
-
84880507665
-
Mutational heterogeneity in cancer and the search for new cancer-associated genes
-
Lawrence, M.S., Stojanov, P., Polak, P., et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499 (2013), 214–218.
-
(2013)
Nature
, vol.499
, pp. 214-218
-
-
Lawrence, M.S.1
Stojanov, P.2
Polak, P.3
-
18
-
-
20644467467
-
Systems biotechnology for strain improvement
-
Lee, S.Y., Lee, D.Y., Kim, T.Y., Systems biotechnology for strain improvement. Trends Biotechnol 23 (2005), 349–358.
-
(2005)
Trends Biotechnol
, vol.23
, pp. 349-358
-
-
Lee, S.Y.1
Lee, D.Y.2
Kim, T.Y.3
-
19
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li, H., Durbin, R., Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26 (2010), 589–595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
20
-
-
79959829720
-
Widespread RNA and DNA sequence differences in the human transcriptome
-
Li, M., Wang, I.X., Li, Y., et al. Widespread RNA and DNA sequence differences in the human transcriptome. Science 333 (2011), 53–58.
-
(2011)
Science
, vol.333
, pp. 53-58
-
-
Li, M.1
Wang, I.X.2
Li, Y.3
-
21
-
-
84863101693
-
AdapterRemoval: easy cleaning of next-generation sequencing reads
-
Lindgreen, S., AdapterRemoval: easy cleaning of next-generation sequencing reads. BMC Res Notes, 5, 2012, 337.
-
(2012)
BMC Res Notes
, vol.5
, pp. 337
-
-
Lindgreen, S.1
-
22
-
-
75749103383
-
Rate, molecular spectrum, and consequences of human mutation
-
Lynch, M., Rate, molecular spectrum, and consequences of human mutation. Proc Natl Acad Sci U S A 107 (2010), 961–968.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 961-968
-
-
Lynch, M.1
-
23
-
-
77956295988
-
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A., Hanna, M., Banks, E., et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20 (2010), 1297–1303.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
-
24
-
-
0018080152
-
Synthetic maps of human gene frequencies in Europeans
-
Menozzi, P., Piazza, A., Cavalli-Sforza, L., Synthetic maps of human gene frequencies in Europeans. Science 201 (1978), 786–792.
-
(1978)
Science
, vol.201
, pp. 786-792
-
-
Menozzi, P.1
Piazza, A.2
Cavalli-Sforza, L.3
-
25
-
-
0016711037
-
High resolution two-dimensional electrophoresis of proteins
-
O'Farrell, P.H., High resolution two-dimensional electrophoresis of proteins. J Biol Chem 250 (1975), 4007–4021.
-
(1975)
J Biol Chem
, vol.250
, pp. 4007-4021
-
-
O'Farrell, P.H.1
-
26
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price, A.L., Patterson, N.J., Plenge, R.M., et al. Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38 (2006), 904–909.
-
(2006)
Nat Genet
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
-
27
-
-
84920852152
-
Proteomics of protein post-translational modifications implicated in neurodegeneration
-
Ren, R.J., Dammer, E.B., Wang, G., et al. Proteomics of protein post-translational modifications implicated in neurodegeneration. Transl Neurodegener, 3, 2014, 23.
-
(2014)
Transl Neurodegener
, vol.3
, pp. 23
-
-
Ren, R.J.1
Dammer, E.B.2
Wang, G.3
-
28
-
-
84862908315
-
Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing
-
Reumers, J., De Rijk, P., Zhao, H., et al. Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing. Nat Biotechnol 30 (2012), 61–68.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 61-68
-
-
Reumers, J.1
De Rijk, P.2
Zhao, H.3
-
29
-
-
84883745092
-
The advantages of SMRT sequencing
-
Roberts, R.J., Carneiro, M.O., Schatz, M.C., The advantages of SMRT sequencing. Genome Biol, 14, 2013, 405.
-
(2013)
Genome Biol
, vol.14
, pp. 405
-
-
Roberts, R.J.1
Carneiro, M.O.2
Schatz, M.C.3
-
30
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
Rothberg, J.M., Hinz, W., Rearick, T.M., et al. An integrated semiconductor device enabling non-optical genome sequencing. Nature 475 (2011), 348–352.
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
-
31
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure, J., Ji, H., Next-generation DNA sequencing. Nat Biotechnol 26 (2008), 1135–1145.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
32
-
-
43749105558
-
Linkage disequilibrium – understanding the evolutionary past and mapping the medical future
-
Slatkin, M., Linkage disequilibrium – understanding the evolutionary past and mapping the medical future. Nat Rev Genet 9 (2008), 477–485.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 477-485
-
-
Slatkin, M.1
-
33
-
-
84996777256
-
F-box/LRR-repeat protein 7 is genetically associated with Alzheimer's disease
-
Tosto, G., Fu, H., Vardarajan, B.N., et al. F-box/LRR-repeat protein 7 is genetically associated with Alzheimer's disease. Ann Clin Transl Neurol 2 (2015), 810–820.
-
(2015)
Ann Clin Transl Neurol
, vol.2
, pp. 810-820
-
-
Tosto, G.1
Fu, H.2
Vardarajan, B.N.3
-
34
-
-
0026865024
-
Preferential PCR amplification of alleles: mechanisms and solutions
-
Walsh, P.S., Erlich, H.A., Higuchi, R., Preferential PCR amplification of alleles: mechanisms and solutions. PCR Methods Appl 1 (1992), 241–250.
-
(1992)
PCR Methods Appl
, vol.1
, pp. 241-250
-
-
Walsh, P.S.1
Erlich, H.A.2
Higuchi, R.3
-
35
-
-
84890444970
-
Mass spectrometry strategies for clinical metabolomics and lipidomics in psychiatry, neurology, and neuro-oncology
-
Wood, P.L., Mass spectrometry strategies for clinical metabolomics and lipidomics in psychiatry, neurology, and neuro-oncology. Neuropsychopharmacology 39 (2014), 24–33.
-
(2014)
Neuropsychopharmacology
, vol.39
, pp. 24-33
-
-
Wood, P.L.1
-
36
-
-
84856735736
-
A review of current proteomics technologies with a survey on their widespread use in reproductive biology investigations
-
e752
-
Wright, P.C., Noirel, J., Ow, S.Y., et al. A review of current proteomics technologies with a survey on their widespread use in reproductive biology investigations. Theriogenology, 77(738–765), 2012, e752.
-
(2012)
Theriogenology
, vol.77
, Issue.738-765
-
-
Wright, P.C.1
Noirel, J.2
Ow, S.Y.3
-
37
-
-
84887611816
-
Next-generation sequencing in the clinic: promises and challenges
-
Xuan, J., Yu, Y., Qing, T., et al. Next-generation sequencing in the clinic: promises and challenges. Cancer Lett 340 (2013), 284–295.
-
(2013)
Cancer Lett
, vol.340
, pp. 284-295
-
-
Xuan, J.1
Yu, Y.2
Qing, T.3
-
38
-
-
84865992574
-
A survey of error-correction methods for next-generation sequencing
-
Yang, X., Chockalingam, S.P., Aluru, S., A survey of error-correction methods for next-generation sequencing. Brief Bioinform 14 (2013), 56–66.
-
(2013)
Brief Bioinform
, vol.14
, pp. 56-66
-
-
Yang, X.1
Chockalingam, S.P.2
Aluru, S.3
-
39
-
-
70350694443
-
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye, K., Schulz, M.H., Long, Q., et al. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25 (2009), 2865–2871.
-
(2009)
Bioinformatics
, vol.25
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
Long, Q.3
|