메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Generalized DNA barcode design based on Hamming codes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CODING ALGORITHM; DNA BARCODING; DNA SEQUENCE; GENETIC CODE; GENETIC DISTANCE; HAMMING BARCODE; PROCESS OPTIMIZATION;

EID: 84861214013     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036852     Document Type: Article
Times cited : (72)

References (21)
  • 2
    • 79751526431 scopus 로고    scopus 로고
    • Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire
    • Nguyen P, Ma J, Pei D, Obert C, Cheng C, Geiger TL, (2011) Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire. BMC Genomics 12: 106.
    • (2011) BMC Genomics , vol.12 , pp. 106
    • Nguyen, P.1    Ma, J.2    Pei, D.3    Obert, C.4    Cheng, C.5    Geiger, T.L.6
  • 3
    • 0345051044 scopus 로고    scopus 로고
    • Normalization and subtraction: two approaches to facilitate gene discovery
    • Bonaldo MF, Lennon G, Soares MB, (1996) Normalization and subtraction: two approaches to facilitate gene discovery. Genome Res 6: 791-806.
    • (1996) Genome Res , vol.6 , pp. 791-806
    • Bonaldo, M.F.1    Lennon, G.2    Soares, M.B.3
  • 6
    • 70749085913 scopus 로고    scopus 로고
    • BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing
    • Frank, DL, (2009) BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing. BMC Bioinformatics 10: 362.
    • (2009) BMC Bioinformatics , vol.10 , pp. 362
    • Frank, D.L.1
  • 7
    • 34547834963 scopus 로고    scopus 로고
    • The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
    • Binladen J, Gilbert MT, Bollback JP, Panitz F, Bendixen C, et al. (2007) The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One 14; 2 (2): e197.
    • (2007) PLoS One 14 , vol.2 , Issue.2
    • Binladen, J.1    Gilbert, M.T.2    Bollback, J.P.3    Panitz, F.4    Bendixen, C.5
  • 8
    • 77951973196 scopus 로고    scopus 로고
    • A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies
    • Galan M, Guivier E, Caraux G, Charbonnel N, Cosson JF, (2010) A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies. BMC Genomics 11; 11: 296.
    • (2010) BMC Genomics , vol.11 , Issue.11 , pp. 296
    • Galan, M.1    Guivier, E.2    Caraux, G.3    Charbonnel, N.4    Cosson, J.F.5
  • 9
    • 77955237447 scopus 로고    scopus 로고
    • Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples
    • Smith AM, Heisler LE, St Onge RP, Farias-Hesson E, Wallace IM, et al. (2010) Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples. Nucleic Acids Res 38, 13: e142.
    • (2010) Nucleic Acids Res , vol.13 , Issue.38
    • Smith, A.M.1    Heisler, L.E.2    St Onge, R.P.3    Farias-Hesson, E.4    Wallace, I.M.5
  • 10
    • 0142214674 scopus 로고    scopus 로고
    • DNA sequence-based bar codes for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources
    • Qiu F, Guo L, Wen TJ, Liu F, Ashlock DA, et al. (2003) DNA sequence-based bar codes for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources. Plant Physiol 133 (2): 475-481.
    • (2003) Plant Physiol , vol.133 , Issue.2 , pp. 475-481
    • Qiu, F.1    Guo, L.2    Wen, T.J.3    Liu, F.4    Ashlock, D.A.5
  • 11
    • 0030667755 scopus 로고    scopus 로고
    • Demonstration of a word design strategy for DNA computing on surfaces
    • Frutos AG, Liu Q, Thiel AJ, Sanner AM, Condon AE, et al. (1997) Demonstration of a word design strategy for DNA computing on surfaces. Nucleic Acids Res 25 (23): 4748-4757.
    • (1997) Nucleic Acids Res , vol.25 , Issue.23 , pp. 4748-4757
    • Frutos, A.G.1    Liu, Q.2    Thiel, A.J.3    Sanner, A.M.4    Condon, A.E.5
  • 12
    • 0033677332 scopus 로고    scopus 로고
    • Universal DNA tag systems: a combinatorial design scheme
    • Ben-Dor A, Karp R, Schwikowski B, Yakhini Z, (2000) Universal DNA tag systems: a combinatorial design scheme. J Comput Biol 7 (3-4): 503-519.
    • (2000) J Comput Biol , vol.7 , Issue.3-4 , pp. 503-519
    • Ben-Dor, A.1    Karp, R.2    Schwikowski, B.3    Yakhini, Z.4
  • 13
    • 0344686478 scopus 로고    scopus 로고
    • DNA sequence design based on template strategy
    • Liu W, Wang S, Gao L, Zhang F, Xu J, (2003) DNA sequence design based on template strategy. J Comput Biol 43 (6): 2014-2018.
    • (2003) J Comput Biol , vol.43 , Issue.6 , pp. 2014-2018
    • Liu, W.1    Wang, S.2    Gao, L.3    Zhang, F.4    Xu, J.5
  • 14
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R, (2007) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5 (3): 235-237.
    • (2007) Nat Methods , vol.5 , Issue.3 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 15
    • 53249132629 scopus 로고    scopus 로고
    • Identification of genetic variants using bar-coded multiplexed sequencing
    • Craig DW, Pearson JV, Szelinger S, Sekar A, Redman M, et al. (2008) Identification of genetic variants using bar-coded multiplexed sequencing. Nat Methods 5 (10): 887-893.
    • (2008) Nat Methods , vol.5 , Issue.10 , pp. 887-893
    • Craig, D.W.1    Pearson, J.V.2    Szelinger, S.3    Sekar, A.4    Redman, M.5
  • 16
  • 17
    • 84943817322 scopus 로고
    • Error Detecting and Error Correcting Codes
    • Hamming RW, (1950) Error Detecting and Error Correcting Codes. The Bell System Technical Journal 29 (2): 147-160.
    • (1950) The Bell System Technical Journal , vol.29 , Issue.2 , pp. 147-160
    • Hamming, R.W.1
  • 18
    • 0001174154 scopus 로고
    • Polynomial codes over certain finite fields
    • Reed IS, Solomon, G, (1960) Polynomial codes over certain finite fields. J Soc Indust Appl Math 8: 2, 300-304.
    • (1960) J Soc Indust Appl Math , vol.8 , Issue.2 , pp. 300-304
    • Reed, I.S.1    Solomon, G.2
  • 19
    • 0001116877 scopus 로고
    • Binary codes capable of correcting deletions, insertions, and reversals
    • Levenshtein VI, (1966) Binary codes capable of correcting deletions, insertions, and reversals. Soviet physics- Doklady 10, 8: 707-709.
    • (1966) Soviet Physics- Doklady , vol.8 , Issue.10 , pp. 707-709
    • Levenshtein, V.I.1
  • 20
    • 67650047735 scopus 로고    scopus 로고
    • DNA Sudoku-harnessing high-throughput sequencing for multiplexed specimen analysis
    • Erlich Y, Chang K, Gordon A, Ronen R, Navon O, et al. (2009) DNA Sudoku-harnessing high-throughput sequencing for multiplexed specimen analysis. Genome Res 19 (7): 1243-1253.
    • (2009) Genome Res , vol.19 , Issue.7 , pp. 1243-1253
    • Erlich, Y.1    Chang, K.2    Gordon, A.3    Ronen, R.4    Navon, O.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.