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Volumn 17, Issue 1, 2016, Pages

The Lair: A resource for exploratory analysis of published RNA-Seq data

Author keywords

Exploratory data analysis; Interactive visualization; Kallisto; Reanalysis; Reproducibility; RNA Seq; Sequence read archive; Shiny; Sleuth

Indexed keywords

INFORMATION ANALYSIS; RNA; VISUALIZATION;

EID: 84999780248     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-016-1357-2     Document Type: Article
Times cited : (12)

References (15)
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    • ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets
    • Frazee AC, Langmead B, Leek JT. ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets. BMC Bioinforma. 2011;12:449.
    • (2011) BMC Bioinforma , vol.12 , pp. 449
    • Frazee, A.C.1    Langmead, B.2    Leek, J.T.3
  • 7
    • 85083596805 scopus 로고    scopus 로고
    • Sleuth: inspect your RNA-Seq [Internet].
    • Accessed 31 May
    • Pimentel H, Bray N, Puente S, Melsted P, Pachter L. sleuth: inspect your RNA-Seq [Internet]. Available from: http://pachterlab.github.io/sleuth/. Accessed 31 May 2016.
    • (2016)
    • Pimentel, H.1    Bray, N.2    Puente, S.3    Melsted, P.4    Pachter, L.5
  • 8
    • 84926494057 scopus 로고    scopus 로고
    • Shiny: Web Application Framework for R [Internet]
    • Accessed 31 May 2016
    • Chang W, Cheng J, Allaire JJ, Xie Y, McPherson J, RStudio, et al. shiny: Web Application Framework for R [Internet]. 2016 Available from: https://cran.r-project.org/web/packages/shiny/index.html. Accessed 31 May 2016.
    • (2016)
    • Chang, W.1    Cheng, J.2    Allaire, J.J.3    Xie, Y.4    McPherson, J.5    Studio, R.6
  • 9
    • 84867306721 scopus 로고    scopus 로고
    • Snakemake-a scalable bioinformatics workflow engine
    • Köster J, Rahmann S. Snakemake-a scalable bioinformatics workflow engine. Bioinformatics. 2012;28:2520-2.
    • (2012) Bioinformatics , vol.28 , pp. 2520-2522
    • Köster, J.1    Rahmann, S.2
  • 12
  • 14
    • 85083608551 scopus 로고    scopus 로고
    • Accessed 31 May 2016
    • SpryMedia. DataTables [Internet]. 2016. Available from: https://datatables.net/. Accessed 31 May 2016.
    • (2016) DataTables [Internet]
  • 15
    • 84947867559 scopus 로고    scopus 로고
    • Genome-wide RNA-Seq of Human Motor Neurons Implicates Selective ER Stress Activation in Spinal Muscular Atrophy
    • Ng S-Y, Soh BS, Rodriguez-Muela N, Hendrickson DG, Price F, Rinn JL, et al. Genome-wide RNA-Seq of Human Motor Neurons Implicates Selective ER Stress Activation in Spinal Muscular Atrophy. Cell Stem Cell. 2015;17:569-84.
    • (2015) Cell Stem Cell , vol.17 , pp. 569-584
    • Ng, S.-Y.1    Soh, B.S.2    Rodriguez-Muela, N.3    Hendrickson, D.G.4    Price, F.5    Rinn, J.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.