Genome sequence of the vancomycin-producing Amycolatopsis orientalis subsp. orientalis strain KCTC 9412T

Genome Announcements

Volumn 1, Issue 3, 2013, Pages

  Jeong, Haeyoung ^a   Sim, Young Mi ^a   Kim, Hyun Ju ^a   Lee, Dong Woo ^b   Lim, Si Kyu ^c   Lee, Sang Jun ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b Kyungpook National University   (South Korea)

^c GenoTech Corporation   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84997831744     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00408-13     Document Type: Article

References (10)

1. Levine DP. 2006. Vancomycin: a history. Clin. Infect. Dis. 42(Suppl 1): S5-S12.
2. Moellering RC, Jr. 2006. Vancomycin: a 50-year reassessment. Clin. Infect. Dis. 42(Suppl 1):S3-S4.
3. Jung HM, Kim SY, Moon HJ, Oh DK, Lee JK. 2007. Optimization of culture conditions and scale-up to pilot and plant scales for vancomycin production by Amycolatopsis orientalis. Appl. Microbiol. Biotechnol. 77: 789-795.
4. Nikodinovic J, Barrow KD, Chuck JA. 2003. High yield preparation of genomic DNA from Streptomyces. Biotechniques 35:932-934, 936.
5. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
6. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
7. Zhao W, Zhong Y, Yuan H, Wang J, Zheng H, Wang Y, Cen X, Xu F, Bai J, Han X, Lu G, Zhu Y, Shao Z, Yan H, Li C, Peng N, Zhang Z, Zhang Y, Lin W, Fan Y, Qin Z, Hu Y, Zhu B, Wang S, Ding X, Zhao GP. 2010. Complete genome sequence of the Rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism. Cell Res. 20:1096-1108.
8. Richter M, Rossello-Mora R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. U. S. A. 106: 19126-19131.
9. Li L, Stoeckert CJ, Jr, Roos DS. 2003. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13:2178-2189.
10. Marshall CG, Lessard IA, Park I, Wright GD. 1998. Glycopeptide antibiotic resistance genes in glycopeptide-producing organisms. Antimicrob. Agents Chemother. 42:2215-2220.