-
2
-
-
77956569860
-
-
R. Abel, L. Wang, R. A. Friesner, B. J. Berne, J Chem Theory Comput 2010, 6, 2924.
-
(2010)
J Chem Theory Comput
, vol.6
, pp. 2924
-
-
Abel, R.1
Wang, L.2
Friesner, R.A.3
Berne, B.J.4
-
3
-
-
77953631827
-
-
C. Bissantz, B. Kuhn, M. Stahl, J Med Chem 2010, 53, 5061.
-
(2010)
J Med Chem
, vol.53
, pp. 5061
-
-
Bissantz, C.1
Kuhn, B.2
Stahl, M.3
-
4
-
-
84876295685
-
-
S. Riniker, L. J. Barandun, F. Diederich, O. Kraemer, A. Steffan, W. F. van Gunsteren, J Comput Aided Mol Des 2012, 26, 1293.
-
(2012)
J Comput Aided Mol Des
, vol.26
, pp. 1293
-
-
Riniker, S.1
Barandun, L.J.2
Diederich, F.3
Kraemer, O.4
Steffan, A.5
Van Gunsteren, W.F.6
-
6
-
-
20444381685
-
-
A. T. García-Sosa, S. Firth-Clark, R. L. Mancera, J Chem Inform Model 2005, 45, 624.
-
(2005)
J Chem Inform Model
, vol.45
, pp. 624
-
-
García-Sosa, A.T.1
Firth-Clark, S.2
Mancera, R.L.3
-
10
-
-
40949163431
-
-
R. Abel, T. Young, R. Farid, B. J. Berne, R. A. Friesner, J Am Chem Soc 2008, 130, 2817.
-
(2008)
J am Chem Soc
, vol.130
, pp. 2817
-
-
Abel, R.1
Young, T.2
Farid, R.3
Berne, B.J.4
Friesner, R.A.5
-
14
-
-
33846524439
-
-
T. Young, R. Abel, B. Kim, B. J. Berne, R. A. Friesner, Natl Acad Sci 2007, 104, 808.
-
(2007)
Natl Acad Sci
, vol.104
, pp. 808
-
-
Young, T.1
Abel, R.2
Kim, B.3
Berne, B.J.4
Friesner, R.A.5
-
15
-
-
27644490825
-
-
T. Imai, R. Hiraoka, A. Kovalenko, F. Hirata, J Am Chem Soc 2005, 127, 15334.
-
(2005)
J am Chem Soc
, vol.127
, pp. 15334
-
-
Imai, T.1
Hiraoka, R.2
Kovalenko, A.3
Hirata, F.4
-
16
-
-
34247263219
-
-
M. Baroni, G. Cruciani, S. Sciabola, F. Perruccio, J. S. Mason, J Chem Inform Model 2007, 47, 279.
-
(2007)
J Chem Inform Model
, vol.47
, pp. 279
-
-
Baroni, M.1
Cruciani, G.2
Sciabola, S.3
Perruccio, F.4
Mason, J.S.5
-
17
-
-
84902164279
-
-
High end GPCR design: crafted ligand design and druggability analysis using protein structure, lipophilic hotspots and explicit water networks
-
High end GPCR design: crafted ligand design and druggability analysis using protein structure, lipophilic hotspots and explicit water networks. Jonathan S. Mason, A. Bortolato, D. R. Weiss, F. Deflorian, B. Tehan, and F. H. Marshall. In Silico Pharmacology 2013, 1:23.
-
(2013)
Silico Pharmacology
, vol.1
, pp. 23
-
-
Mason, J.S.1
Bortolato, A.2
Weiss, D.R.3
Deflorian, F.4
Tehan, B.5
Marshall, F.H.6
-
18
-
-
84940189864
-
-
A. S. Bayden, D. T. Moustakas, D. Joseph-McCarthy, M. L. Lamb, J Chem Inform Model 2015, 55, 1552. doi: 10.1021/ci500746d
-
(2015)
J Chem Inform Model
, vol.55
, pp. 1552
-
-
Bayden, A.S.1
Moustakas, D.T.2
Joseph-Mccarthy, D.3
Lamb, M.L.4
-
19
-
-
84919663273
-
-
C. Velez-Vega, D. J. J. McKay, V. Aravamuthan, R. Pearlstein, J. S. Duca, J Chem Inform Model 2014, 54, 3344.
-
(2014)
J Chem Inform Model
, vol.54
, pp. 3344
-
-
Velez-Vega, C.1
McKay, D.J.J.2
Aravamuthan, V.3
Pearlstein, R.4
Duca, J.S.5
-
20
-
-
84946925742
-
-
C. Velez-Vega, D. J. J. McKay, T. Kurtzman, V. Aravamuthan, R. A. Pearlstein, J. S. Duca, J Chem Theory Comput 2015, 11, 5090.
-
(2015)
J Chem Theory Comput
, vol.11
, pp. 5090
-
-
Velez-Vega, C.1
McKay, D.J.J.2
Kurtzman, T.3
Aravamuthan, V.4
Pearlstein, R.A.5
Duca, J.S.6
-
21
-
-
84890535595
-
-
G. Cui, J. M. Swails, E. S. Manas, J Chem Theory Comput 2013, 9, 5539.
-
(2013)
J Chem Theory Comput
, vol.9
, pp. 5539
-
-
Cui, G.1
Swails, J.M.2
Manas, E.S.3
-
24
-
-
70349683018
-
-
J. Michel, J. Tirado-Rives, W. L. Jorgensen, J Phys Chem B 2009, 113, 13337.
-
(2009)
J Phys Chem B
, vol.113
, pp. 13337
-
-
Michel, J.1
Tirado-Rives, J.2
Jorgensen, W.L.3
-
26
-
-
84947747548
-
-
E. D. López, J. P. Arcon, D. F. Gauto, A. A. Petruk, C. P. Modenutti, V. G. Dumas, M. A. Marti, A. G. Turjanski, Bioinformatics btv411 2015. doi: 10.1093/bioinformatics/btv411.
-
(2015)
Bioinformatics Btv411
-
-
López, E.D.1
Arcon, J.P.2
Gauto, D.F.3
Petruk, A.A.4
Modenutti, C.P.5
Dumas, V.G.6
Marti, M.A.7
Turjanski, A.G.8
-
27
-
-
85044014299
-
-
C. N. Nguyen, T. K. Young, M. K. Gilson, J Chem Phys 2012, 137, 44101.
-
(2012)
J Chem Phys
, vol.137
, pp. 44101
-
-
Nguyen, C.N.1
Young, T.K.2
Gilson, M.K.3
-
30
-
-
85029953904
-
-
Univ Calif San Francisco
-
D. A. Case, J. T. Berryman, R. M. Betz, D. S. Cerutti, T. E. Cheatham, I. I. I. T. A. Darden, R. E. Duke, T. J. Giese, H. Gohlke, A. W. Goetz, N. Homeyer, S. Izadi, P. Janowski, J. Kaus, A. Kovalenko, T. S. Lee, S. LeGrand, P. Li, T. Luchko, R. Luo, B. Madej, K. M. Merz, G. Monard, P. Needham, H. Nguyen, H. T. Nguyen, I. Omelyan, A. Onufriev, D. R. Roe, A. Roitberg, R. Salomon-Ferrer, C. L. Simmerling, W. Smith, J. Swails, R. C. Walker, J. Wang, R. M. Wolf, X. Wu, D. M. York, P. A. Kollman, Univ Calif San Francisco 2015.
-
(2015)
-
-
Case, D.A.1
Berryman, J.T.2
Betz, R.M.3
Cerutti, D.S.4
Cheatham, T.E.5
Darden, I.I.6
Duke, R.E.7
Giese, T.J.8
Gohlke, H.9
Goetz, A.W.10
Homeyer, N.11
Izadi, S.12
Janowski, P.13
Kaus, J.14
Kovalenko, A.15
Lee, T.S.16
Legrand, S.17
Li, P.18
Luchko, T.19
Luo, R.20
Madej, B.21
Merz, K.M.22
Monard, G.23
Needham, P.24
Nguyen, H.25
Nguyen, H.T.26
Omelyan, I.27
Onufriev, A.28
Roe, D.R.29
Roitberg, A.30
Salomon-Ferrer, R.31
Simmerling, C.L.32
Smith, W.33
Swails, J.34
Walker, R.C.35
Wang, J.36
Wolf, R.M.37
Wu, X.38
York, D.M.39
Kollman, P.A.40
more..
-
31
-
-
84873719639
-
-
R. Salomon-Ferrer, D. A. Case, R. C. Walker, Wiley Interdiscip Rev Comput Mol Sci 2013, 3, 198.
-
(2013)
Wiley Interdiscip Rev Comput Mol Sci
, vol.3
, pp. 198
-
-
Salomon-Ferrer, R.1
Case, D.A.2
Walker, R.C.3
-
32
-
-
0029878720
-
-
W. Humphrey, A. Dalke, K. Schulten, J Mol Graph 1996, 14, 33.
-
(1996)
J Mol Graph
, vol.14
, pp. 33
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
34
-
-
0037468471
-
-
S. Maignan, J.-P. Guilloteau, Y. M. Choi-Sledeski, M. R. Becker, W. R. Ewing, H. W. Pauls, A. P. Spada, V. Mikol, J Med Chem 2003, 46, 685.
-
(2003)
J Med Chem
, vol.46
, pp. 685
-
-
Maignan, S.1
Guilloteau, J.-P.2
Choi-Sledeski, Y.M.3
Becker, M.R.4
Ewing, W.R.5
Pauls, H.W.6
Spada, A.P.7
Mikol, V.8
-
35
-
-
84904128550
-
-
C. N. Nguyen, A. Cruz, M. K. Gilson, T. Kurtzman, J Chem Theory Comput 2014, 10, 2769.
-
(2014)
J Chem Theory Comput
, vol.10
, pp. 2769
-
-
Nguyen, C.N.1
Cruz, A.2
Gilson, M.K.3
Kurtzman, T.4
-
40
-
-
0034716334
-
-
J. Kim, I.-S. Jung, S.-Y. Kim, E. Lee, J.-K. Kang, S. Sakamoto, K. Yamaguchi, K. Kim, J Am Chem Soc 2000, 122, 540.
-
(2000)
J am Chem Soc
, vol.122
, pp. 540
-
-
Kim, J.1
Jung, I.-S.2
Kim, S.-Y.3
Lee, E.4
Kang, J.-K.5
Sakamoto, S.6
Yamaguchi, K.7
Kim, K.8
-
41
-
-
25144489591
-
-
W. S. Jeon, K. Moon, S. H. Park, H. Chun, Y. H. Ko, J. Y. Lee, E. S. Lee, S. Samal, N. Selvapalam, M. V. Rekharsky, V. Sindelar, D. Sobransingh, Y. Inoue, A. E. Kaifer, K. Kim, J Am Chem Soc 2005, 127, 12984.
-
(2005)
J am Chem Soc
, vol.127
-
-
Jeon, W.S.1
Moon, K.2
Park, S.H.3
Chun, H.4
Ko, Y.H.5
Lee, J.Y.6
Lee, E.S.7
Samal, S.8
Selvapalam, N.9
Rekharsky, M.V.10
Sindelar, V.11
Sobransingh, D.12
Inoue, Y.13
Kaifer, A.E.14
Kim, K.15
-
42
-
-
2942532422
-
-
J. Wang, R. M. Wolf, J. W. Caldwell, P. A. Kollman, D. A. Case, J Comput Chem 2004, 25, 1157.
-
(2004)
J Comput Chem
, vol.25
, pp. 1157
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
43
-
-
0036890178
-
-
A. Jakalian, D. B. Jack, C. I. Bayly, J Comput Chem 2002, 23, 1623.
-
(2002)
J Comput Chem
, vol.23
, pp. 1623
-
-
Jakalian, A.1
Jack, D.B.2
Bayly, C.I.3
-
44
-
-
84938930908
-
-
J. A. Maier, C. Martinez, K. Kasavajhala, L. Wickstrom, K. E. Hauser, C. Simmerling, J Chem Theory Comput 2015. doi: 10.1021/acs.jctc.5b00255.
-
(2015)
J Chem Theory Comput
-
-
Maier, J.A.1
Martinez, C.2
Kasavajhala, K.3
Wickstrom, L.4
Hauser, K.E.5
Simmerling, C.6
-
45
-
-
0004016501
-
-
W. L. Jorgensen, J. Chandrasekhar, J. D. Madura, R. W. Impey, M. L. Klein, J Chem Phys 1983, 79, 926.
-
(1983)
J Chem Phys
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
46
-
-
84952104504
-
-
R. W. Pastor, B. R. Brooks, A. Szabo, Mol Phys 1988, 65, 1409.
-
(1988)
Mol Phys
, vol.65
, pp. 1409
-
-
Pastor, R.W.1
Brooks, B.R.2
Szabo, A.3
-
48
-
-
33646940952
-
-
J. P. Ryckaert, G. Ciccotti, H. J. C. Berendsen, J Comput Phys 1977, 23, 327.
-
(1977)
J Comput Phys
, vol.23
, pp. 327
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
49
-
-
70349932423
-
-
G. M. Morris, R. Huey, W. Lindstrom, M. F. Sanner, R. K. Belew, D. S. Goodsell, A. Olson, J Comput Chem 2009, 30, 2785.
-
(2009)
J Comput Chem
, vol.30
, pp. 2785
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
Goodsell, D.S.6
Olson, A.7
-
50
-
-
85029935376
-
-
AMBER Advanced Tutorial 25—Grid Inhomogeneous Solvent Theory (GIST) Example: Introduction, 4th January
-
AMBER Advanced Tutorial 25—Grid Inhomogeneous Solvent Theory (GIST) Example: Introduction. http://ambermd.org/tutorials/advanced/tutorial25/; Accessed 4th January 2016.
-
(2016)
-
-
-
52
-
-
84859171166
-
-
F. Shah, J. Gut, J. Legac, D. Shivakumar, W. Sherman, P. J. Rosenthal, M. A. Avery, J Chem Inform Model 2012, 52, 696.
-
(2012)
J Chem Inform Model
, vol.52
, pp. 696
-
-
Shah, F.1
Gut, J.2
Legac, J.3
Shivakumar, D.4
Sherman, W.5
Rosenthal, P.J.6
Avery, M.A.7
-
53
-
-
84882868265
-
-
R. A. Pearlstein, W. Sherman, R. Abel, Proteins Struct Funct Bioinform 2013, 81, 1509.
-
(2013)
Proteins Struct Funct Bioinform
, vol.81
, pp. 1509
-
-
Pearlstein, R.A.1
Sherman, W.2
Abel, R.3
-
54
-
-
84856776282
-
-
T. Beuming, Y. Che, R. Abel, B. Kim, V. Shanmugasundaram, W. Sherman, Proteins Struct Funct Bioinform 2012, 80, 871.
-
(2012)
Proteins Struct Funct Bioinform
, vol.80
, pp. 871
-
-
Beuming, T.1
Che, Y.2
Abel, R.3
Kim, B.4
Shanmugasundaram, V.5
Sherman, W.6
-
57
-
-
84925745494
-
-
J. M. Fox, K. Kang, W. Sherman, A. Heroux, G. M. Sastry, M. Baghbanzadeh, M. R. Lockett, G. M. Whitesides, J Am Chem Soc 2015, 137, 3859.
-
(2015)
J am Chem Soc
, vol.137
, pp. 3859
-
-
Fox, J.M.1
Kang, K.2
Sherman, W.3
Heroux, A.4
Sastry, G.M.5
Baghbanzadeh, M.6
Lockett, M.R.7
Whitesides, G.M.8
-
58
-
-
81055130316
-
-
P. W. Snyder, J. Mecinovic, D. T. Moustakas, S. W. Thomas III, M. Harder, E. T. Mack, M.R. Lockett, A. Heroux, W. Sherman, G. M. Whitesides, Proc Natl Acad Sci 2011, 108, 17889.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 17889
-
-
Snyder, P.W.1
Mecinovic, J.2
Moustakas, D.T.3
Thomas, S.W.4
Harder, M.5
Mack, E.T.6
Lockett, M.R.7
Heroux, A.8
Sherman, W.9
Whitesides, G.M.10
-
59
-
-
84880361865
-
-
M. R. Lockett, H. Lange, B. Breiten, A. Heroux, W. Sherman, D. Rappoport, P. O. Yau, P. W. Snyder, G. M. Whitesides, Angew Chem Int Ed 2013, 52, 7714.
-
(2013)
Angew Chem Int Ed
, vol.52
, pp. 7714
-
-
Lockett, M.R.1
Lange, H.2
Breiten, B.3
Heroux, A.4
Sherman, W.5
Rappoport, D.6
Yau, P.O.7
Snyder, P.W.8
Whitesides, G.M.9
-
60
-
-
84886933840
-
-
B. Breiten, M. R. Lockett, W. Sherman, S. Fujita, M. Al-Sayah, H. Lange, C. M. Bowers, A. Heroux, G. Krilov, G.M. Whitesides, J AmChemSoc 2013, 135, 15579.
-
(2013)
J Amchemsoc
, vol.135
, pp. 15579
-
-
Breiten, B.1
Lockett, M.R.2
Sherman, W.3
Fujita, S.4
Al-Sayah, M.5
Lange, H.6
Bowers, C.M.7
Heroux, A.8
Krilov, G.9
Whitesides, G.M.10
-
61
-
-
84955178278
-
-
L. Wickstrom, N. Deng, P. He, A. Mentes, C. Nguyen, M. K. Gilson, T. Kurtzman, E. Gallicchio, R. M. Levy, J Mol Recognit 29, 10, 2016.
-
(2016)
J Mol Recognit
, vol.29
, pp. 10
-
-
Wickstrom, L.1
Deng, N.2
He, P.3
Mentes, A.4
Nguyen, C.5
Gilson, M.K.6
Kurtzman, T.7
Gallicchio, E.8
Levy, R.M.9
|