-
1
-
-
48449087282
-
The contributions of Paul Ehrlich to pharmacology: a tribute on the occasion of the centenary of his Nobel Prize
-
Bosch F, Rosich L.The contributions of Paul Ehrlich to pharmacology: a tribute on the occasion of the centenary of his Nobel Prize.Pharmacology 2008;82:171-179.
-
(2008)
Pharmacology
, vol.82
, pp. 171-179
-
-
Bosch, F.1
Rosich, L.2
-
2
-
-
28244482232
-
The reaction between acetyl choline and muscle cells. Part II
-
Clark AJ.The reaction between acetyl choline and muscle cells. Part II.J Physiol 1927;64:123-143.
-
(1927)
J Physiol
, vol.64
, pp. 123-143
-
-
Clark, A.J.1
-
4
-
-
0015861774
-
Relationship between the inhibition constant (K1) and the concentration of inhibitor, which causes 50 per cent inhibition (I50) of an enzymatic reaction
-
Cheng Y, Prusoff WH.Relationship between the inhibition constant (K1) and the concentration of inhibitor, which causes 50 per cent inhibition (I50) of an enzymatic reaction.Biochem Pharmacol 1973;22:3099-3108.
-
(1973)
Biochem Pharmacol
, vol.22
, pp. 3099-3108
-
-
Cheng, Y.1
Prusoff, W.H.2
-
5
-
-
0019974353
-
Nonequilibrium kinetics of a cyclic GMP-binding protein in Dictyostelium discoideum
-
Van Haastert PJM, Van Walsum H, Pasveer SJ.Nonequilibrium kinetics of a cyclic GMP-binding protein in Dictyostelium discoideum.J Cell Biol 1982;94:271-278.
-
(1982)
J Cell Biol
, vol.94
, pp. 271-278
-
-
Van Haastert, P.J.M.1
Van Walsum, H.2
Pasveer, S.J.3
-
6
-
-
33748325882
-
Drug-target residence time and its implications for lead optimization
-
Copeland RA, Pompliano DL, Meek TD.Drug-target residence time and its implications for lead optimization.Nat Rev Drug Discov 2006;5:730-739.
-
(2006)
Nat Rev Drug Discov
, vol.5
, pp. 730-739
-
-
Copeland, R.A.1
Pompliano, D.L.2
Meek, T.D.3
-
7
-
-
44049103958
-
Residence time of receptor-ligand complexes and effect on biological function
-
Tummino PJ, Copeland RA.Residence time of receptor-ligand complexes and effect on biological function.Biochemistry 2008;47:5481-5492.
-
(2008)
Biochemistry
, vol.47
, pp. 5481-5492
-
-
Tummino, P.J.1
Copeland, R.A.2
-
9
-
-
0142192116
-
Safety and pharmacokinetics of an oral p38 MAP kinase inhibitor (BIRB 796 BS), administered twice daily for 14 days to healthy volunteers
-
Abstract 157.
-
Polmar SH, Yong C-L, Wood CC, Staehle H, Gupta A.Safety and pharmacokinetics of an oral p38 MAP kinase inhibitor (BIRB 796 BS), administered twice daily for 14 days to healthy volunteers.J Allergy Clin Immunol 2002;Abstract 157.
-
(2002)
J Allergy Clin Immunol
-
-
Polmar, S.H.1
Yong, C.-L.2
Wood, C.C.3
Staehle, H.4
Gupta, A.5
-
10
-
-
0029063466
-
Kinetics and thermodynamics of virus binding to receptor. Studies with rhinovirus, intercellular adhesion molecule-1 (ICAM-1), and surface plasmon resonance
-
Casasnovas JM, Springer, TA.Kinetics and thermodynamics of virus binding to receptor. Studies with rhinovirus, intercellular adhesion molecule-1 (ICAM-1), and surface plasmon resonance.J Biol Chem 1995;270:13216-13224.
-
(1995)
J Biol Chem
, vol.270
, pp. 13216-13224
-
-
Casasnovas, J.M.1
Springer, T.A.2
-
11
-
-
40949163431
-
Role of the active-site solvent in the thermodynamics of factor Xa ligand binding
-
Abel R, Young T, Farid R, Berne BJ, Friesner RA.Role of the active-site solvent in the thermodynamics of factor Xa ligand binding.J Am Chem Soc 2008;130:2817-2831.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 2817-2831
-
-
Abel, R.1
Young, T.2
Farid, R.3
Berne, B.J.4
Friesner, R.A.5
-
12
-
-
33846524439
-
Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding
-
Young T, Abel R, Kim B, Berne BJ, Friesner, RA.Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding.Proc Natl Acad Sci U S A 2007;104:808-813.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 808-813
-
-
Young, T.1
Abel, R.2
Kim, B.3
Berne, B.J.4
Friesner, R.A.5
-
13
-
-
77955810437
-
New hypotheses about the structure-function of proprotein convertase subtilisin/kexin type 9: analysis of the epidermal growth factor-like repeat A docking site using WaterMap
-
Pearlstein RA, Hu Q-Y, Zhou J, Yowe D, Levell J, Dale B, Kaushik VK, Daniels D, Hanrahan S, Sherman W, Abel R.New hypotheses about the structure-function of proprotein convertase subtilisin/kexin type 9: analysis of the epidermal growth factor-like repeat A docking site using WaterMap.Prot Struct Funct Bioinf 2010;78:2571-2586.
-
(2010)
Prot Struct Funct Bioinf
, vol.78
, pp. 2571-2586
-
-
Pearlstein, R.A.1
Hu, Q.-Y.2
Zhou, J.3
Yowe, D.4
Levell, J.5
Dale, B.6
Kaushik, V.K.7
Daniels, D.8
Hanrahan, S.9
Sherman, W.10
Abel, R.11
-
14
-
-
84872600203
-
The translocation kinetics of antibiotics through porin OmpC: insights from structure-based solvation mapping using WaterMap
-
Tran Q-T, Williams S, Farid R, Erdemli G, Pearlstein R.The translocation kinetics of antibiotics through porin OmpC: insights from structure-based solvation mapping using WaterMap.Prot Struct Funct Bioinf 2013;81:291-299.
-
(2013)
Prot Struct Funct Bioinf
, vol.81
, pp. 291-299
-
-
Tran, Q.-T.1
Williams, S.2
Farid, R.3
Erdemli, G.4
Pearlstein, R.5
-
15
-
-
0023667707
-
Possible role for water dissociation in the slow binding of phosphorus-containing transition state-analogue inhibitors of thermolysin
-
Bartlett P, Marlowe CK.Possible role for water dissociation in the slow binding of phosphorus-containing transition state-analogue inhibitors of thermolysin.Biochemistry 1987;26:8553-8561.
-
(1987)
Biochemistry
, vol.26
, pp. 8553-8561
-
-
Bartlett, P.1
Marlowe, C.K.2
-
16
-
-
83055179348
-
Shielded hydrogen bonds as structural determinants of binding kinetics: application in drug design
-
Schmidtke P, Luque FJ, Murray JB, Barril X.Shielded hydrogen bonds as structural determinants of binding kinetics: application in drug design.J Am Chem Soc 2011;133:18903-18910.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 18903-18910
-
-
Schmidtke, P.1
Luque, F.J.2
Murray, J.B.3
Barril, X.4
-
17
-
-
80052001378
-
Pathway and mechanism of drug binding to G-protein-coupled receptors
-
Dror RO, Pan AC, Arlow DH, Borhani DW, Maragakis P, Shan Y, Xu H, Shaw DE.Pathway and mechanism of drug binding to G-protein-coupled receptors.Proc Nat Acad Sci U S A 2011;108:13118-13123.
-
(2011)
Proc Nat Acad Sci U S A
, vol.108
, pp. 13118-13123
-
-
Dror, R.O.1
Pan, A.C.2
Arlow, D.H.3
Borhani, D.W.4
Maragakis, P.5
Shan, Y.6
Xu, H.7
Shaw, D.E.8
-
18
-
-
0042020196
-
The kinetics of binding to p38 MAP kinase by analogs of BIRB 796
-
Regan J, Pargellis CA, Cirillo PF, Gilmore T, Hickey ER, Peet GW, Proto A, Swinamer A, Moss N.The kinetics of binding to p38 MAP kinase by analogs of BIRB 796.Biorg Med Chem Lett 2003;13:3101-3104.
-
(2003)
Biorg Med Chem Lett
, vol.13
, pp. 3101-3104
-
-
Regan, J.1
Pargellis, C.A.2
Cirillo, P.F.3
Gilmore, T.4
Hickey, E.R.5
Peet, G.W.6
Proto, A.7
Swinamer, A.8
Moss, N.9
-
19
-
-
67749099405
-
High-energy water sites determine peptide binding and specificity of PDZ domains
-
Beuming T, Farid R, Sherman W.High-energy water sites determine peptide binding and specificity of PDZ domains.Prot Sci 2009;18:1609-1619.
-
(2009)
Prot Sci
, vol.18
, pp. 1609-1619
-
-
Beuming, T.1
Farid, R.2
Sherman, W.3
-
20
-
-
77950678935
-
Understanding kinase selectivity through energetic analysis of binding site waters
-
Robinson DD, Sherman W, Farid R.Understanding kinase selectivity through energetic analysis of binding site waters.ChemMed Chem 2010;5:618-627.
-
(2010)
ChemMed Chem
, vol.5
, pp. 618-627
-
-
Robinson, D.D.1
Sherman, W.2
Farid, R.3
-
21
-
-
84856776282
-
Thermodynamic analysis of water molecules at the surface of proteins and applications to binding site prediction and characterization
-
Beuming T, Che Y, Abel R, Kim B, Shanmugasundaram V, Sherman W.Thermodynamic analysis of water molecules at the surface of proteins and applications to binding site prediction and characterization.Prot Struct Funct Bioinf 2011;80:871-883.
-
(2011)
Prot Struct Funct Bioinf
, vol.80
, pp. 871-883
-
-
Beuming, T.1
Che, Y.2
Abel, R.3
Kim, B.4
Shanmugasundaram, V.5
Sherman, W.6
-
22
-
-
0034665713
-
Structural mechanism for STI-571 inhibition of abelson tyrosine kinase
-
Schindler T, Bornmann W, Pellicena P, Miller WT, Clarkson B, Kuriyan J.Structural mechanism for STI-571 inhibition of abelson tyrosine kinase.Science 2000;289:1938-1942.
-
(2000)
Science
, vol.289
, pp. 1938-1942
-
-
Schindler, T.1
Bornmann, W.2
Pellicena, P.3
Miller, W.T.4
Clarkson, B.5
Kuriyan, J.6
-
23
-
-
12144289677
-
Mechanism of activation of the RAF-ERK signaling pathway by oncogenic mutations of B-RAF
-
Cancer Genome Project
-
Wan PTC, Garnett MJ, Roe SM, Lee S, Niculescu-Duvaz D, Good VM, Cancer Genome Project, Jones CM, Marshall CJ, Springer CJ, Barford D.Mechanism of activation of the RAF-ERK signaling pathway by oncogenic mutations of B-RAF.Cell 2004;116:855-867.
-
(2004)
Cell
, vol.116
, pp. 855-867
-
-
Wan, P.T.C.1
Garnett, M.J.2
Roe, S.M.3
Lee, S.4
Niculescu-Duvaz, D.5
Good, V.M.6
Jones, C.M.7
Marshall, C.J.8
Springer, C.J.9
Barford, D.10
-
24
-
-
33745298429
-
Rational design of inhibitors that bind to inactive kinase conformations
-
Liu Y, Gray NS.Rational design of inhibitors that bind to inactive kinase conformations.Nat Chem Biol 2006;2:358-364.
-
(2006)
Nat Chem Biol
, vol.2
, pp. 358-364
-
-
Liu, Y.1
Gray, N.S.2
-
25
-
-
18344395134
-
Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site
-
Pargellis C, Tong L, Churchill L, Cirillo PF, Gilmore T, Graham AG, Grob PM, Hickey ER, Moss N, Pav S, Regan J.Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site.Nat Struct Biol 2002;9:268-272.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 268-272
-
-
Pargellis, C.1
Tong, L.2
Churchill, L.3
Cirillo, P.F.4
Gilmore, T.5
Graham, A.G.6
Grob, P.M.7
Hickey, E.R.8
Moss, N.9
Pav, S.10
Regan, J.11
-
26
-
-
19944434344
-
Identification of novel p38alpha MAP kinase inhibitors using fragment-based lead generation
-
Gill A, Frederickson M, Cleasby A, Woodhead S, Carr M, Woodhead A, Walker M, Congreve M, Devine L, Tisi D, O'Reilly M, Seavers L, Davis D, Curry J, Anthony R, Padova A, Murray C, Carr R, Jhoti H. Identification of novel p38alpha MAP kinase inhibitors using fragment-based lead generation.J Med Chem 2005;48:414-426.
-
(2005)
J Med Chem
, vol.48
, pp. 414-426
-
-
Gill, A.1
Frederickson, M.2
Cleasby, A.3
Woodhead, S.4
Carr, M.5
Woodhead, A.6
Walker, M.7
Congreve, M.8
Devine, L.9
Tisi, D.10
O'Reilly, M.11
Seavers, L.12
Davis, D.13
Curry, J.14
Anthony, R.15
Padova, A.16
Murray, C.17
Carr, R.18
Jhoti, H.19
-
27
-
-
84880529288
-
Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments
-
Sastry GM, Adzhigirey M, Day T, Annabhimoju R, Sherman W. Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments, J Comput Aid Mol Des, 2013;27:221-234.
-
(2013)
J Comput Aid Mol Des
, vol.27
, pp. 221-234
-
-
Sastry, G.M.1
Adzhigirey, M.2
Day, T.3
Annabhimoju, R.4
Sherman, W.5
-
28
-
-
12144289984
-
Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy
-
Friesner RA, Banks JL, Murphy RB, Halgren TA, Klicic JJ, Mainz DT, Repasky MP, Knoll EH, Shelley M, Perry JK, Shaw DE, Francis P, Shenkin PS.Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.J Med Chem 2004;47:1739-1749.
-
(2004)
J Med Chem
, vol.47
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
29
-
-
32044462537
-
NMR characterization of kinase p38 dynamics in free and ligand-bound forms
-
Vogtherr M, Saxena K, Hoelder S, Grimme S, Betz M, Schieborr U, Pescatore B, Robin M, Delarbre L, Langer T, Wendt KU, Schwalbe H.NMR characterization of kinase p38 dynamics in free and ligand-bound forms.Agnew Chem Int Ed 2006;45:993-997.
-
(2006)
Agnew Chem Int Ed
, vol.45
, pp. 993-997
-
-
Vogtherr, M.1
Saxena, K.2
Hoelder, S.3
Grimme, S.4
Betz, M.5
Schieborr, U.6
Pescatore, B.7
Robin, M.8
Delarbre, L.9
Langer, T.10
Wendt, K.U.11
Schwalbe, H.12
-
30
-
-
58549114067
-
A conserved protonation-dependent switch controls drug binding in the Abl kinase
-
Shan Y, Seeliger MA, Eastwood MP, Frank F, Xu H, Jensen MO, Dror RO, Kuriyan J, Shaw DE.A conserved protonation-dependent switch controls drug binding in the Abl kinase.Proc Nat Acad Sci U S A 2009;106:139-144.
-
(2009)
Proc Nat Acad Sci U S A
, vol.106
, pp. 139-144
-
-
Shan, Y.1
Seeliger, M.A.2
Eastwood, M.P.3
Frank, F.4
Xu, H.5
Jensen, M.O.6
Dror, R.O.7
Kuriyan, J.8
Shaw, D.E.9
-
31
-
-
0030850228
-
Evaluating the energetics of empty cavities and internal mutations in proteins
-
Rashin AA, Rashin BH, Rashin A, Abagyan R.Evaluating the energetics of empty cavities and internal mutations in proteins.Prot Sci 1997;6:2143-2158.
-
(1997)
Prot Sci
, vol.6
, pp. 2143-2158
-
-
Rashin, A.A.1
Rashin, B.H.2
Rashin, A.3
Abagyan, R.4
-
32
-
-
0030589519
-
Properties of the protein matrix revealed by the free energy of cavity formation
-
Kocher J-P, Prevost M, Wodak SJ, Lee B.Properties of the protein matrix revealed by the free energy of cavity formation.Structure 1996;4:1517-1529.
-
(1996)
Structure
, vol.4
, pp. 1517-1529
-
-
Kocher, J.-P.1
Prevost, M.2
Wodak, S.J.3
Lee, B.4
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