Reclassification of the genus Leuconostoc and proposals of Fructobacillus fructosus gen. nov., comb. nov., Fructobacillus durionis comb. nov., Fructobacillus ficulneus comb. nov. and Fructobacillus pseudoficulneus comb. nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 9, 2008, Pages 2195-2205

  Endo, Akihito ^a,b,c   Okada, Sanae ^a  

^a TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

^b NATIONAL INSTITUTE OF HEALTH SCIENCES   (Japan)

^c STELLENBOSCH UNIVERSITY   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ALCOHOL; BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIAL RNA; GLUCOSE; PROTEIN RPOC; RECA PROTEIN; RNA 16S; SPACER DNA; UNCLASSIFIED DRUG; DNA DIRECTED RNA POLYMERASE; RIBOSOMAL SPACER DNA; RIBOSOME DNA;

ARTICLE; CORRELATION ANALYSIS; GENE CLUSTER; GENE SEQUENCE; LEUCONOSTOC; LEUCONOSTOC DURIONIS; LEUCONOSTOC FICULNEUM; LEUCONOSTOC FICULNEUS; LEUCONOSTOC FRUCTOSUM; LEUCONOSTOC FRUCTOSUS; LEUCONOSTOC MESENTEROIDES; LEUCONOSTOC PSEUDOFICULNEUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SPECIES DIFFERENCE; SPECIES IDENTIFICATION; TAXONOMY; TYPE STRAIN; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; CYTOLOGY; DNA SEQUENCE; GENETICS; GENOTYPE; METABOLISM; MOLECULAR GENETICS; RNA GENE; SCANNING ELECTRON MICROSCOPY; SEQUENCE HOMOLOGY;

LEUCONOSTOC; LEUCONOSTOC CARNOSUM; LEUCONOSTOC CITREUM; LEUCONOSTOC DURIONIS; LEUCONOSTOC FALLAX; LEUCONOSTOC FICULNEUM; LEUCONOSTOC FRUCTOSUM; LEUCONOSTOC GASICOMITATUM; LEUCONOSTOC GELIDUM; LEUCONOSTOC INHAE; LEUCONOSTOC KIMCHII; LEUCONOSTOC LACTIS; LEUCONOSTOC MESENTEROIDES; LEUCONOSTOC PSEUDOFICULNEUM; LEUCONOSTOC PSEUDOMESENTEROIDES;

ACETIC ACID; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; DNA-DIRECTED RNA POLYMERASES; ETHANOL; GENES, RRNA; GENOTYPE; GLUCOSE; LEUCONOSTOC; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; PHYLOGENY; REC A RECOMBINASES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 53749091019     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65609-0     Document Type: Article

References (49)

1. Antunes, A., Rainey, F. A., Nobre, M. F., Schumann, P., Ferreira, A. M., Ramos, A., Santos, H. & da Costa, M. S. (2002). Leuconostoc ficulneum sp. nov., a novel lactic acid bacterium isolated from a ripe fig, and reclassification of Lactobacillus fructosus as Leuconostoc fructosum comb. nov. Int J Syst Evol Microbiol 52, 647-655.
2. Björkroth, K. J., Geisen, R., Schillinger, U., Weiss, N., De Vos, P., Holzapfel, W. H., Korkeala, H. J. & Vandamme, P. (2000). Characterization of Leuconostoc gasicomitatum sp. nov., associated with spoiled raw tomato-marinated broiler meat strips packaged under modified-atmosphere conditions. Appl Environ Microbiol 66, 3764-3772.
3. Björkroth, K. J., Geisen, R., Schillinger, U., Weiss, N., De Vos, P., Holzapfel, W. H., Korkeala, H. J. & Vandamme, P. (2001). Leuconostoc gasicomitatum sp. nov. In Validation of Publication of New Names and New Combinations Previously Effectively Published Outside the IJSEM, List no. 79. Int J Syst Evol Microbiol 51, 263-265.
4. Brosius, J., Dull, T. J., Sleeter, D. D. & Noller, H. F. (1981). Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148, 107-127.
5. Cavalli-Sforza, L. L. & Edwards, A. W. F. (1967). Phylogenetic analysis models and estimation procedures. Am J Hum Genet 19, 233-257.
6. Chambel, L., Chelo, I. M., Zé, Zé, L., Pedro, L. G., Santos, M. A. & Tenreiro, R. (2006). Leuconostoc pseudoficulneum sp. nov., isolated from a ripe fig. Int J Syst Evol Microbiol 56, 1375-1381.
7. Chelo, I. M., Zé-Zé, L. & Tenreiro, R. (2007). Congruence of evolutionary relationships inside the Leuconostoc-Oenococcus-Weissella clade assessed by phylogenetic analysis of the 16S rRNA gene, dnaA, gyrB, rpoC and dnaK. Int J Syst Evol Microbiol 57, 276-286.
8. Collins, M. D., Rodrigues, U. M., Ash, C., Aguirre, M., Farrow, J. A. E., Martinez-Murcia, A., Philips, B. A., Williams, A. M. & Wallbanks, S. (1991). Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol Lett 77, 5-12.
9. Condon, S. (1987). Responses of lactic acid bacteria to oxygen. FEMS Microbiol Rev 46, 269-280.
10. De Bruyne, K., Schillinger, U., Caroline, L., Böhringer, B., Cleenwerck, I., Vancanneeyt, M., De Vuyst, L., Franz, C. M. A. P. & Vandamme, P. (2007). Leuconostoc holzapfelii sp. nov., isolated from Ethiopian coffee fermentation and assessment of sequence analysis of housekeeping genes for delineation of Leuconostoc species. Int J Syst Evol Microbiol 57, 2952-2959.
11. Dellaglio, F., Dicks, L. M. T. & Torriani, S. (1995). The genus Leuconostoc. In Lactic Acid Bacteria, vol. 2. The Genera of Lactic Acid Bacteria, pp. 235-238. Edited by B. J. B. Wood & W. H. Holzapfel. Blackie Academic & Professional.
12. Dellaglio, F., Felis, G. E., Castioni, A., Torriani, S. & Germond, J. E. (2005). Lactobacillus delbrueckii subsp. indicus subsp. nov., isolated from Indian dairy products. Int J Syst Evol Microbiol 55, 401-404.
13. DeMoss, R. D., Bard, R. C. & Gunsalus, I. C. (1951). The mechanism of heterolactic fermentation: a new route of ethanol fermentation. J Bacteriol 62, 499-511.
14. Eisen, J. A. (1995). The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species. J Mol Evol 41, 1105-1123.
15. Endo, A. & Okada, S. (2005). Lactobacillus satsumensis sp. nov., isolated from mashes of shochu, a traditional Japanese distilled spirit made from fermented rice and other starchy materials. Int J Syst Evol Microbiol 55, 83-85.
16. Farrow, J. A. E., Facklam, R. R. & Collins, M. D. (1989). Nucleic acid homologies of some vancomycin-resistant leuconostocs and description of Leuconostoc citreum sp. nov. and Leuconostoc pseudomesenteroides sp. nov. Int J Syst Bacteriol 39, 279-283.
17. Felis, G. E., Dellaglio, F., Mizzi, L. & Torriani, S. (2001). Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group. Int J Syst Evol Microbiol 51, 2113-2117.
18. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
19. Felsenstein, J. (2005). PHYLIP (Phylogeny Inference Package), version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
20. Garvie, E. I. (1960). The genus Leuconostoc and its nomenclature. J Dairy Res 27, 283-292.
21. Higashiguchi, D. T., Husseneder, C., Grace, J. K. & Berestecky, J. M. (2006). Pilibacter termitis gen. nov., sp. nov., a lactic acid bacterium from the hindgut of the Formosan subterranean termite (Coptotermes formosanus). Int J Syst Evol Microbiol 56, 15-20.
22. Jian, W. & Dong, X. (2002). Transfer of Bifidobacterium inopinatum and Bifidobacterium denticolens to Scardovia inopinata gen. nov., comb. nov., and Parascardovia denticolens gen. nov., comb. nov., respectively. Int J Syst Evol Microbiol 52, 809-812.
23. Johnson, M. K. & McCleskey, C. S. (1957). Studies on the aerobic carbohydrate metabolism of Leuconostoc mesenteroides. J Bacteriol 74, 22-25.
24. Keenan, T. W. (1968). Production of acetic acid and other volatile compounds by Leuconostoc citrovorum and Leuconostoc dextranicum. Appl Microbiol 16, 1881-1885.
25. Kim, J., Chun, J. & Han, H. U. (2000). Leuconostoc kimchii sp. nov., a new species from kimchi. Int J Syst Evol Microbiol 50, 1915-1919.
26. Kim, B., Lee, J., Jang, J., Kim, J. & Han, H. (2003). Leuconostoc inhae sp. nov., a lactic acid bacterium isolated from kimchi. Int J Syst Evol Microbiol 53, 1123-1126.
27. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
28. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
29. Kodama, R. (1956). Studies on the nutrition of lactic acid bacteria. Part IV. Lactobacillus fructosus nov. sp., a new species of lactic acid bacteria. J Agric Chem Soc Jpn 30, 705-708 (in Japanese).
30. Leisner, J. J., Vancanneyt, M., Goris, J., Christensen, H. & Rusul, G. (2000). Description of Paralactobacillus selangorensis gen. nov., sp. nov., a new lactic acid bacterium isolated from chili bo, a Malaysian food ingredient. Int J Syst Evol Microbiol 50, 19-24.
31. Leisner, J. J., Vancanneyt, M., van der Meulen, R., Lefebvre, K., Engelbeen, K., Hoste, B., Laursen, B. G., Bay, L., Rusul, G. & other authors (2005). Leuconostoc durionis sp. nov., a heterofermenter with no detectable gas production from glucose. Int J Syst Evol Microbiol 55, 1267-1270.
32. Lucey, C. A. & Condon, S. (1986). Active role of oxygen and NADH oxidase in growth and energy metabolism of Leuconostoc. J Gen Microbiol 132, 1789-1796.
33. Martinez-Murcia, A. J. & Collins, M. D. (1991). A phylogenetic analysis of an atypical leuconostoc: description of Leuconostoc fallax sp. nov. FEMS Microbiol Lett 82, 55-60.
34. Martinez-Murcia, A. J. & Collins, M. D. (1992). Leuconostoc fallax sp. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 40. Int J Syst Bacteriol 42, 191-192.
35. Morse, R., Collins, M. D. O'Hanlon, K., Wallbanks, S. & Richardson, P. T. (1996). Analysis of the β′ subunit of DNA-dependent RNA polymerase does noit support the hypothesis inferred from 16S rRNA analysis that Oenococcus oeni (formerly Leuconostoc oenos) is a techytelic (fast-evolving) bacterium. Int J Syst Bacteriol 46, 1004-1009.
36. Naser, S. M., Thompson, F. L., Hoste, B., Gevers, D., Dawyndt, P., Vancanneyt, M. & Swings, J. (2005). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151, 2141-2150.
37. Naser, S. M., Vancanneyt M., Hoste, B., Snauwaert, C. & Swings, J. (2006). Lactobacillus cypricasei Lawson et al. 2001 is a later heterotypic synonym of Lactobacillus acidipiscis Tanasupawat et al. 2000. Int J Syst Evol Microbiol 56, 1681-1683.
38. Rachman, C. N., Kabadjova, H., Prevost, H. & Dousset X. (2003). Identification of Lactobacillus alimentarius and Lactobacillus farciminis with 16S-23S rDNA intergenic spacer region polymorphism and PCR amplification using species-specific oligonucleotide. J Appl Microbiol 95, 1207-1216.
39. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
40. Sakamoto, M. & Komagata, K. (1996). Aerobic growth of and activities of NADH oxidase and NADH peroxidase in lactic acid bacteria. J Ferment Bioeng 81, 210-216.
41. Shaw, B. G. & Harding, C. b. (1989). Leuconostoc gelidum sp. nov. and Leuconostoc carnosum sp. nov. from chill-stored meats. Int J Syst Bacteriol 39, 217-223.
42. Skerman, V. B. D., McGowan, V. & Sneath, P. H. A. (editors) (1980). Approved lists of bacterial names. Int J Syst Bacteriol 30, 225-420.
43. Sneath, P. H. A., Mair, N. S., Sharpe, M. E. & Holt J. G. (editors) (1986). Bergey's Manual of Systematic Bacteriology, vol. 2, Baltimore: Williams & Wilkins.
44. Thompson, J. D., Gibson, T. J., Plewniak F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
45. Torriani, S., Felis, G. E. & Dellaglio, F. (2001). Differentiation of Lactobacillus plantarum, L. pentosus, and L. paraplantarum by recA gene sequence analysis and multiplex PCR with recA gene-derived primers. Appl Environ Microbiol 67, 3450-3454.
46. Van de Peer, Y., De Rijk P., Wuyts, J., Winkelmans, T. & De Watcher, R. (2000). The European small subunit ribosomal RNA database. Nucleic Acids Res 28, 175-176.
47. Van Tieghem, P. (1878). Sur la gomme du sucerie (Leuconostoc mesenteroides). Ann Sci Nat Bot 7, 180-203.
48. Vancanneyt, M., Zamfir, M., de Wachter, M., Cleenwerck, I., Hoste, B., Rossi, F., Dellaglio, F., de Vuyst, L. & Swings, J. (2006). Reclassification of Leuconostoc argentinum as a later synonym of Leuconostoc lactis. Int J Syst Evol Microbiol 56, 213-216.
49. Zavaleta A. I., Martinez-Murcia, A. J. & Rodriguez-Valera, F. (1996). 16S-23S rDNA intergenic sequences indicate that Leuconostoc oenos is phylogenetically homogeneous. Microbiology 142, 2105-2114.