메뉴 건너뛰기




Volumn 1508, Issue , 2017, Pages 289-304

Nuclear magnetic resonance spectroscopy-based identification of yeast

Author keywords

Classification; Identification; NMR spectroscopy; Nuclear magnetic resonance; Yeast

Indexed keywords

CLASSIFIER; DATA ANALYSIS; DATA PROCESSING; FUNGAL CELL CULTURE; FUNGAL STRAIN; FUNGUS IDENTIFICATION; INFORMATION PROCESSING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; VALIDATION PROCESS; YEAST; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MYCOSIS;

EID: 84995505539     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-6515-1_17     Document Type: Chapter
Times cited : (6)

References (37)
  • 1
    • 84907780465 scopus 로고    scopus 로고
    • The role of nuclear magnetic resonance in medical mycology
    • Sorrell TC, Himmelreich U (2008) The role of nuclear magnetic resonance in medical mycology. Curr Fungal Infect Rep 2:149-156
    • (2008) Curr Fungal Infect Rep , vol.2 , pp. 149-156
    • Sorrell, T.C.1    Himmelreich, U.2
  • 2
    • 84908614939 scopus 로고    scopus 로고
    • MALDI-TOF MS based identification of food-borne yeast isolates
    • Pavlovic M, Mewes A, Maggipinto M et al (2014) MALDI-TOF MS based identification of food-borne yeast isolates. J Microbiol Methods 106:123-128
    • (2014) J Microbiol Methods , vol.106 , pp. 123-128
    • Pavlovic, M.1    Mewes, A.2    Maggipinto, M.3
  • 3
    • 84856763848 scopus 로고    scopus 로고
    • Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology
    • Croxatto A, Prod’hom G, Greub G (2012) Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology. FEMS Microbiol Rev 36:380-407
    • (2012) FEMS Microbiol Rev , vol.36 , pp. 380-407
    • Croxatto, A.1    Prod’Hom, G.2    Greub, G.3
  • 4
    • 0042029527 scopus 로고    scopus 로고
    • Rapid identification of Candida species by using nuclear magnetic resonance spectroscopy and a statistical classification strategy
    • Himmelreich U, Somorjai RL, Dolenko B et al (2003) Rapid identification of Candida species by using nuclear magnetic resonance spectroscopy and a statistical classification strategy. Appl Environ Microbiol 69:4566-4574
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4566-4574
    • Himmelreich, U.1    Somorjai, R.L.2    Dolenko, B.3
  • 5
    • 0038699591 scopus 로고    scopus 로고
    • High-throughput characterisation of yeast mutants for functional genomics using metabolic footprinting
    • Allen JK, Davey HM, Broadhurst D et al (2003) High-throughput characterisation of yeast mutants for functional genomics using metabolic footprinting. Nat Biotechnol 21: 692-696
    • (2003) Nat Biotechnol , vol.21 , pp. 692-696
    • Allen, J.K.1    Davey, H.M.2    Broadhurst, D.3
  • 6
    • 0036828528 scopus 로고    scopus 로고
    • Identification of medically relevant microorganisms by vibrational spectroscopy
    • Maquelin K, Kirschner C, Choo-Smith LP et al (2002) Identification of medically relevant microorganisms by vibrational spectroscopy. J Microbiol Methods 51:255-271
    • (2002) J Microbiol Methods , vol.51 , pp. 255-271
    • Maquelin, K.1    Kirschner, C.2    Choo-Smith, L.P.3
  • 7
    • 18844406001 scopus 로고    scopus 로고
    • Measuring the metabolome: Current analytical technologies
    • Dunn WB, Bailey NJC, Johnson HE (2005) Measuring the metabolome: current analytical technologies. Analyst 130:606-625
    • (2005) Analyst , vol.130 , pp. 606-625
    • Dunn, W.B.1    Bailey, N.2    Johnson, H.E.3
  • 8
    • 34548300162 scopus 로고    scopus 로고
    • Metabolic footprinting as a tool for discriminating between brewing yeasts
    • Pope GA, MacKenzie DA, Defernez M et al (2007) Metabolic footprinting as a tool for discriminating between brewing yeasts. Yeast 24:667-679
    • (2007) Yeast , vol.24 , pp. 667-679
    • Pope, G.A.1    Mackenzie, D.A.2    Defernez, M.3
  • 9
    • 25644458675 scopus 로고    scopus 로고
    • A Rapid screening test to distinguish between Candida albicans and Candida dubliniensis using NMR Spectroscopy
    • Himmelreich U, Somorjai RL, Dolenko B et al (2005) A Rapid screening test to distinguish between Candida albicans and Candida dubliniensis using NMR Spectroscopy. FEMS Microbiol Lett 251:327-332
    • (2005) FEMS Microbiol Lett , vol.251 , pp. 327-332
    • Himmelreich, U.1    Somorjai, R.L.2    Dolenko, B.3
  • 11
    • 77749286893 scopus 로고    scopus 로고
    • High-throughput identification of bacteria and yeast by matrix-assisted laser desorption ionization-time of flight mass spectrometry in conventional medical microbiology laboratories
    • van Veen SQ, Claas EC, Kuijper EJ (2010) High-throughput identification of bacteria and yeast by matrix-assisted laser desorption ionization-time of flight mass spectrometry in conventional medical microbiology laboratories. J Clin Microbiol 48:900-907
    • (2010) J Clin Microbiol , vol.48 , pp. 900-907
    • Van Veen, S.Q.1    Claas, E.C.2    Kuijper, E.J.3
  • 12
    • 77958539494 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption ionization-time of flight mass spectrometry, a revolution in clinical microbial identification
    • Bizzini A, Greub G (2010) Matrix-assisted laser desorption ionization-time of flight mass spectrometry, a revolution in clinical microbial identification. Clin Microbiol Infect 16:1614-1619
    • (2010) Clin Microbiol Infect , vol.16 , pp. 1614-1619
    • Bizzini, A.1    Greub, G.2
  • 13
    • 0242607632 scopus 로고    scopus 로고
    • Parallel analysis of transcript and metabolic profiles: A new approach in systems biology
    • Urbanczyk-Wochniak E, Luedemann A, Kopka J (2003) Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Rep 4:989-993
    • (2003) EMBO Rep , vol.4 , pp. 989-993
    • Urbanczyk-Wochniak, E.1    Luedemann, A.2    Kopka, J.3
  • 14
    • 25644437926 scopus 로고    scopus 로고
    • NMR spectroscopic determination of microbiological profiles in infectious diseases
    • Himmelreich U, Mountford CE, Sorrell TC (2004) NMR spectroscopic determination of microbiological profiles in infectious diseases. Trends Appl Spectrosc 5:269-283
    • (2004) Trends Appl Spectrosc , vol.5 , pp. 269-283
    • Himmelreich, U.1    Mountford, C.E.2    Sorrell, T.C.3
  • 16
    • 33646548554 scopus 로고    scopus 로고
    • Application of proton nuclear magnetic resonance spectroscopy to the study of Cryptococcus and cryptococcosis
    • Sorrell TC, Wright LC, Malik R et al (2006) Application of proton nuclear magnetic resonance spectroscopy to the study of Cryptococcus and cryptococcosis. FEMS Yeast Res 6:558-566
    • (2006) FEMS Yeast Res , vol.6 , pp. 558-566
    • Sorrell, T.C.1    Wright, L.C.2    Malik, R.3
  • 17
    • 59249095347 scopus 로고    scopus 로고
    • Role of diffusion tensor imaging metrics and in vivo proton magnetic resonance spectroscopy in the differential diagnosis of cystic intracranial mass lesions
    • Nath K, Agarwal M, Ramola M et al (2009) Role of diffusion tensor imaging metrics and in vivo proton magnetic resonance spectroscopy in the differential diagnosis of cystic intracranial mass lesions. Magn Reson Imaging 27:198-206
    • (2009) Magn Reson Imaging , vol.27 , pp. 198-206
    • Nath, K.1    Agarwal, M.2    Ramola, M.3
  • 18
    • 33845244538 scopus 로고    scopus 로고
    • Antifungal effects on metabolite profiles of medically important yeast species measured by nuclear magnetic resonance spectroscopy
    • Coen M, Bodkin J, Power D et al (2006) Antifungal effects on metabolite profiles of medically important yeast species measured by nuclear magnetic resonance spectroscopy. Antimicrob Agents Chemother 50: 4018-4026
    • (2006) Antimicrob Agents Chemother , vol.50 , pp. 4018-4026
    • Coen, M.1    Bodkin, J.2    Power, D.3
  • 19
    • 65449139122 scopus 로고    scopus 로고
    • Rapid etiological classification of meningitis by NMR spectroscopy based on metabolite profiles and host response
    • Himmelreich U, Malik R, Kühn T et al (2009) Rapid etiological classification of meningitis by NMR spectroscopy based on metabolite profiles and host response. PLoS One 4:e5328
    • (2009) Plos One , vol.4
    • Himmelreich, U.1    Malik, R.2    Kühn, T.3
  • 20
    • 28044450369 scopus 로고    scopus 로고
    • Proton nuclear magnetic resonance-based metabonomics for rapid diagnosis of meningitis and ventriculitis
    • Coen M, O’Sullivan M, Bubb WA et al (2005) Proton nuclear magnetic resonance-based metabonomics for rapid diagnosis of meningitis and ventriculitis. Clin Infect Dis 41: 1582-1590
    • (2005) Clin Infect Dis , vol.41 , pp. 1582-1590
    • Coen, M.1    O’Sullivan, M.2    Bubb, W.A.3
  • 21
    • 0024946615 scopus 로고
    • High resolution proton magnetic resonance spectroscopy of biological fluids
    • Emsley JW, Feeney J (eds), Pergamon Press, Oxford
    • Nicholson JK, Wilson ID (1989) High resolution proton magnetic resonance spectroscopy of biological fluids. In: Emsley JW, Feeney J (eds) Progress in nuclear magnetic resonance spectroscopy. Pergamon Press, Oxford, pp 449-501
    • (1989) Progress in Nuclear Magnetic Resonance Spectroscopy , pp. 449-501
    • Nicholson, J.K.1    Wilson, I.D.2
  • 22
    • 0031926888 scopus 로고    scopus 로고
    • Near-optimal region selection for feature space reduction: Novel preprocessing methods for classifying MR spectra
    • Nikulin A, Dolenko B, Bezabeh T et al (1998) Near-optimal region selection for feature space reduction: novel preprocessing methods for classifying MR spectra. NMR Biomed 11:209-217
    • (1998) NMR Biomed , vol.11 , pp. 209-217
    • Nikulin, A.1    Dolenko, B.2    Bezabeh, T.3
  • 23
    • 68949140728 scopus 로고    scopus 로고
    • A comparison of random forest and its Gini importance with standard chemometric methods for a feature selection and classification of spectral data
    • Menze B, Kelm M, Masuch R et al (2009) A comparison of random forest and its Gini importance with standard chemometric methods for a feature selection and classification of spectral data. BMC Bioinformatics 10:1-16
    • (2009) BMC Bioinformatics , vol.10 , pp. 1-16
    • Menze, B.1    Kelm, M.2    Masuch, R.3
  • 24
    • 84946865953 scopus 로고    scopus 로고
    • High resolution 1H NMR spectroscopy discriminates amniotic fluid of fetuses with congenital diaphragmatic hernia from healthy controls
    • Croitor-Sava A, Beck V, Sandaite I et al (2015) High resolution 1H NMR spectroscopy discriminates amniotic fluid of fetuses with congenital diaphragmatic hernia from healthy controls. J Proteome Res 14:4502-4510
    • (2015) J Proteome Res , vol.14 , pp. 4502-4510
    • Croitor-Sava, A.1    Beck, V.2    Sandaite, I.3
  • 25
    • 1542269132 scopus 로고    scopus 로고
    • Unsupervised feature dimension reduction for classification of MR spectra
    • Baumgartner R, Somorjai RL, Bowman C et al (2004) Unsupervised feature dimension reduction for classification of MR spectra. Magn Reson Imaging 22:251-256
    • (2004) Magn Reson Imaging , vol.22 , pp. 251-256
    • Baumgartner, R.1    Somorjai, R.L.2    Bowman, C.3
  • 26
    • 84855658251 scopus 로고    scopus 로고
    • Creating robust, reliable, clinically relevant classifiers from spectroscopic data
    • Somorjai RL (2009) Creating robust, reliable, clinically relevant classifiers from spectroscopic data. Biophys Rev 1:201-211
    • (2009) Biophys Rev , vol.1 , pp. 201-211
    • Somorjai, R.L.1
  • 27
    • 40549100983 scopus 로고    scopus 로고
    • Pattern recognition approaches for classifying proteomic mass spectra of biofluids
    • Somorjai RL (2008) Pattern recognition approaches for classifying proteomic mass spectra of biofluids. Methods Mol Biol 428: 383-395
    • (2008) Methods Mol Biol , vol.428 , pp. 383-395
    • Somorjai, R.L.1
  • 28
    • 77955318041 scopus 로고    scopus 로고
    • The role of public biological resource centers in providing a basic infrastructure for microbial research
    • Janssens D, Arahal DR, Bizet C et al (2010) The role of public biological resource centers in providing a basic infrastructure for microbial research. Res Microbiol 161:422-429
    • (2010) Res Microbiol , vol.161 , pp. 422-429
    • Janssens, D.1    Arahal, D.R.2    Bizet, C.3
  • 29
    • 33847769820 scopus 로고    scopus 로고
    • Integrating different windows on reality: Socio-economic and institutional challenges for culture collections
    • Daniel HM, Himmelreich U, Dedeurwaerdere T (2006) Integrating different windows on reality: socio-economic and institutional challenges for culture collections. Int Soc Sci J 188:369-380
    • (2006) Int Soc Sci J , vol.188 , pp. 369-380
    • Daniel, H.M.1    Himmelreich, U.2    Dedeurwaerdere, T.3
  • 33
    • 0000764772 scopus 로고
    • The use of multiple measurements in taxonomic problems
    • Fisher RA (1936) The use of multiple measurements in taxonomic problems. Ann Eugenics 7:179-188
    • (1936) Ann Eugenics , vol.7 , pp. 179-188
    • Fisher, R.A.1
  • 34
    • 0000325341 scopus 로고
    • On lines and planes of closest fit to systems of points in space
    • Pearson K (1901) On lines and planes of closest fit to systems of points in space. Phil Mag 2:559-572
    • (1901) Phil Mag , vol.2 , pp. 559-572
    • Pearson, K.1
  • 37
    • 0034891474 scopus 로고    scopus 로고
    • Identification of Enterococcus, Streptococcus and Staphylococcus by multivariate analysis of proton magnetic resonance spectroscopic data from plate cultures
    • Bourne R, Himmelreich U, Sharma A et al (2001) Identification of Enterococcus, Streptococcus and Staphylococcus by multivariate analysis of proton magnetic resonance spectroscopic data from plate cultures. J Clin Microbiol 39:2916-2923
    • (2001) J Clin Microbiol , vol.39 , pp. 2916-2923
    • Bourne, R.1    Himmelreich, U.2    Sharma, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.