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Volumn 32, Issue 21, 2016, Pages 3357-3359

AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL; BIOLOGICAL MODEL; HUMAN; METABOLIC ENGINEERING; SOFTWARE; SYSTEMS BIOLOGY;

EID: 84994681134     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btw411     Document Type: Article
Times cited : (116)

References (12)
  • 1
    • 77949475400 scopus 로고    scopus 로고
    • An iterative identification procedure for dynamic modeling of biochemical networks
    • Balsa-Canto, E. et al. (2010) An iterative identification procedure for dynamic modeling of biochemical networks. BMC Syst. Biol., 4, 11.
    • (2010) BMC Syst. Biol. , vol.4 , pp. 11
    • Balsa-Canto, E.1
  • 2
    • 46349105936 scopus 로고    scopus 로고
    • Optimization in computational systems biology
    • Banga, J. (2008) Optimization in computational systems biology. BMC Syst. Biol., 2, 47-53.
    • (2008) BMC Syst. Biol. , vol.2 , pp. 47-53
    • Banga, J.1
  • 3
    • 84891553151 scopus 로고    scopus 로고
    • Global dynamic optimization approach to predict activation in metabolic pathways
    • de Hijas-Liste, G. et al. (2014) Global dynamic optimization approach to predict activation in metabolic pathways. BMC Syst. Biol., 8, 1-15.
    • (2014) BMC Syst. Biol. , vol.8 , pp. 1-15
    • De Hijas-Liste, G.1
  • 4
    • 0036530772 scopus 로고    scopus 로고
    • A fast and elitist multiobjective genetic algorithm: NSGAII
    • Deb, K. et al. (2002) A fast and elitist multiobjective genetic algorithm: NSGAII. IEEE Trans. Evol. Comp., 6, 182-197.
    • (2002) IEEE Trans. Evol. Comp. , vol.6 , pp. 182-197
    • Deb, K.1
  • 5
    • 84945919257 scopus 로고    scopus 로고
    • Robust and efficient parameter estimation in dynamic models of biological systems
    • Gabor, A. And Banga, J. R. (2015) Robust and efficient parameter estimation in dynamic models of biological systems. BMC Syst. Biol., 9, 1-25.
    • (2015) BMC Syst. Biol. , vol.9 , pp. 1-25
    • Gabor, A.1    Banga, J.R.2
  • 6
    • 33745217791 scopus 로고    scopus 로고
    • Sundials: Suite of nonlinear and differential/algebraic equation solvers
    • Hindmarsh, A. C. et al. (2005) Sundials: suite of nonlinear and differential/algebraic equation solvers. ACM Trans. Math. Softw., 31, 363-396.
    • (2005) ACM Trans. Math. Softw. , vol.31 , pp. 363-396
    • Hindmarsh, A.C.1
  • 7
    • 84942154983 scopus 로고    scopus 로고
    • Model-based individualized treatment of chemotherapeutics: Bayesian population modeling and dose optimization
    • Jayachandran, D. et al. (2015) Model-based individualized treatment of chemotherapeutics: Bayesian population modeling and dose optimization. PLoS One, 10, e013324
    • (2015) PLoS One , vol.10 , pp. e013324
    • Jayachandran, D.1
  • 8
    • 0142122303 scopus 로고    scopus 로고
    • Advances in flux balance analysis
    • Kauffman, K. et al. (2003) Advances in flux balance analysis. Curr. Opin. Biotechnol., 14, 491-496.
    • (2003) Curr. Opin. Biotechnol. , vol.14 , pp. 491-496
    • Kauffman, K.1
  • 9
    • 0036441029 scopus 로고    scopus 로고
    • Prediction of temporal gene expression. Metabolic optimization by re-distribution of enzyme activities
    • Klipp, E. et al. (2002) Prediction of temporal gene expression. metabolic optimization by re-distribution of enzyme activities. Eur. J. Biochem., 269, 5406-5413.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 5406-5413
    • Klipp, E.1
  • 10
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1
  • 11
    • 84863088389 scopus 로고    scopus 로고
    • Dynamic optimization of distributed biological systems using robust and efficient numerical techniques
    • Vilas, C. et al. (2012) Dynamic optimization of distributed biological systems using robust and efficient numerical techniques. BMC Syst. Biol., 6, 79.
    • (2012) BMC Syst. Biol. , vol.6 , pp. 79
    • Vilas, C.1
  • 12
    • 84957567940 scopus 로고    scopus 로고
    • Metabolic engineering with multi-objective optimization of kinetic models
    • Villaverde, A. et al. (2016) Metabolic engineering with multi-objective optimization of kinetic models. J. Biotechnol., 222, 1-8.
    • (2016) J. Biotechnol. , vol.222 , pp. 1-8
    • Villaverde, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.