-
1
-
-
84884670407
-
Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation
-
Grote, E.; Fu, Q.; Ji, W.; Liu, X.; Van Eyk, J. E. Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation Methods Mol. Biol. 2013, 1005, 199-213 10.1007/978-1-62703-386-2-16
-
(2013)
Methods Mol. Biol.
, vol.1005
, pp. 199-213
-
-
Grote, E.1
Fu, Q.2
Ji, W.3
Liu, X.4
Van Eyk, J.E.5
-
2
-
-
84886447263
-
A blood-based proteomic classifier for the molecular characterization of pulmonary nodules
-
Li, X.-j.; Hayward, C.; Fong, P.-Y.; Dominguez, M.; Hunsucker, S. W.; Lee, L. W.; McLean, M.; Law, S.; Butler, H.; Schirm, M.; Gingras, O.; Lamontagne, J.; Allard, R.; Chelsky, D.; Price, N. D.; Lam, S.; Massion, P. P.; Pass, H.; Rom, W. N.; Vachani, A.; Fang, K. C.; Hood, L.; Kearney, P. A blood-based proteomic classifier for the molecular characterization of pulmonary nodules Sci. Transl. Med. 2013, 5, 207ra142 10.1126/scitranslmed.3007013
-
(2013)
Sci. Transl. Med.
, vol.5
, pp. 207ra142
-
-
Li, X.-J.1
Hayward, C.2
Fong, P.-Y.3
Dominguez, M.4
Hunsucker, S.W.5
Lee, L.W.6
McLean, M.7
Law, S.8
Butler, H.9
Schirm, M.10
Gingras, O.11
Lamontagne, J.12
Allard, R.13
Chelsky, D.14
Price, N.D.15
Lam, S.16
Massion, P.P.17
Pass, H.18
Rom, W.N.19
Vachani, A.20
Fang, K.C.21
Hood, L.22
Kearney, P.23
more..
-
3
-
-
84863923380
-
Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics
-
Huttenhain, R.; Soste, M.; Selevsek, N.; Rost, H.; Sethi, A.; Carapito, C.; Farrah, T.; Deutsch, E. W.; Kusebauch, U.; Moritz, R. L.; Nimeus-Malmstrom, E.; Rinner, O.; Aebersold, R. Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics Sci. Transl. Med. 2012, 4, 142ra94-142ra94 10.1126/scitranslmed.3003989
-
(2012)
Sci. Transl. Med.
, vol.4
, pp. 142ra94-142ra94
-
-
Huttenhain, R.1
Soste, M.2
Selevsek, N.3
Rost, H.4
Sethi, A.5
Carapito, C.6
Farrah, T.7
Deutsch, E.W.8
Kusebauch, U.9
Moritz, R.L.10
Nimeus-Malmstrom, E.11
Rinner, O.12
Aebersold, R.13
-
4
-
-
33644876912
-
The PeptideAtlas project
-
Desiere, F.; Deutsch, E. W.; King, N. L.; Nesvizhskii, A. I.; Mallick, P.; Eng, J.; Chen, S.; Eddes, J.; Loevenich, S. N.; Aebersold, R. The PeptideAtlas project Nucleic Acids Res. 2006, 34 (Database issue) D655-8 10.1093/nar/gkj040
-
(2006)
Nucleic Acids Res.
, vol.34
, Issue.DATABASE ISSUE
, pp. D655-D658
-
-
Desiere, F.1
Deutsch, E.W.2
King, N.L.3
Nesvizhskii, A.I.4
Mallick, P.5
Eng, J.6
Chen, S.7
Eddes, J.8
Loevenich, S.N.9
Aebersold, R.10
-
5
-
-
84891821345
-
Plasma Proteome Database as a resource for proteomics research: 2014 update
-
Nanjappa, V.; Thomas, J. K.; Marimuthu, A.; Muthusamy, B.; Radhakrishnan, A.; Sharma, R.; Ahmad Khan, A.; Balakrishnan, L.; Sahasrabuddhe, N. A.; Kumar, S.; Jhaveri, B. N.; Sheth, K. V.; Kumar Khatana, R.; Shaw, P. G.; Srikanth, S. M.; Mathur, P. P.; Shankar, S.; Nagaraja, D.; Christopher, R.; Mathivanan, S.; Raju, R.; Sirdeshmukh, R.; Chatterjee, A.; Simpson, R. J.; Harsha, H. C.; Pandey, A.; Prasad, T. S. Plasma Proteome Database as a resource for proteomics research: 2014 update Nucleic Acids Res. 2014, 42, D959-65 10.1093/nar/gkt1251
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D959-D965
-
-
Nanjappa, V.1
Thomas, J.K.2
Marimuthu, A.3
Muthusamy, B.4
Radhakrishnan, A.5
Sharma, R.6
Ahmad Khan, A.7
Balakrishnan, L.8
Sahasrabuddhe, N.A.9
Kumar, S.10
Jhaveri, B.N.11
Sheth, K.V.12
Kumar Khatana, R.13
Shaw, P.G.14
Srikanth, S.M.15
Mathur, P.P.16
Shankar, S.17
Nagaraja, D.18
Christopher, R.19
Mathivanan, S.20
Raju, R.21
Sirdeshmukh, R.22
Chatterjee, A.23
Simpson, R.J.24
Harsha, H.C.25
Pandey, A.26
Prasad, T.S.27
more..
-
6
-
-
84994601814
-
-
(accessed Jan 1)
-
Plasma Proteome Database. http://www.plasmaproteomedatabase.org/ (accessed Jan 1, 2015).
-
(2015)
Plasma Proteome Database
-
-
-
7
-
-
84874074018
-
The biology/disease-driven human proteome project (B/D-HPP): Enabling protein research for the life sciences community
-
Aebersold, R.; Bader, G. D.; Edwards, A. M.; van Eyk, J. E.; Kussmann, M.; Qin, J.; Omenn, G. S. The biology/disease-driven human proteome project (B/D-HPP): enabling protein research for the life sciences community J. Proteome Res. 2013, 12 (1) 23-7 10.1021/pr301151m
-
(2013)
J. Proteome Res.
, vol.12
, Issue.1
, pp. 23-27
-
-
Aebersold, R.1
Bader, G.D.2
Edwards, A.M.3
Van Eyk, J.E.4
Kussmann, M.5
Qin, J.6
Omenn, G.S.7
-
8
-
-
84860331061
-
HUPO 2011: The new Cardiovascular Initiative - Integrating proteomics and cardiovascular biology in health and disease
-
Lam, M. P.; Vivanco, F.; Scholten, A.; Hermjakob, H.; Van Eyk, J.; Ping, P. HUPO 2011: The new Cardiovascular Initiative-integrating proteomics and cardiovascular biology in health and disease Proteomics 2012, 12 (6) 749-51 10.1002/pmic.201270015
-
(2012)
Proteomics
, vol.12
, Issue.6
, pp. 749-751
-
-
Lam, M.P.1
Vivanco, F.2
Scholten, A.3
Hermjakob, H.4
Van Eyk, J.5
Ping, P.6
-
9
-
-
84881508088
-
The Human Eye Proteome Project: Perspectives on an emerging proteome
-
Semba, R. D.; Enghild, J. J.; Venkatraman, V.; Dyrlund, T. F.; Van Eyk, J. E. The Human Eye Proteome Project: Perspectives on an emerging proteome Proteomics 2013, 13, 2500-2511 10.1002/pmic.201300075
-
(2013)
Proteomics
, vol.13
, pp. 2500-2511
-
-
Semba, R.D.1
Enghild, J.J.2
Venkatraman, V.3
Dyrlund, T.F.4
Van Eyk, J.E.5
-
10
-
-
84898609967
-
Highlights of B/D-HPP and HPP Resource Pillar Workshops at 12th Annual HUPO World Congress of Proteomics: September 14-18, 2013, Yokohama, Japan
-
Aebersold, R.; Bader, G. D.; Edwards, A. M.; van Eyk, J.; Kussman, M.; Qin, J.; Omenn, G. S. Highlights of B/D-HPP and HPP Resource Pillar Workshops at 12th Annual HUPO World Congress of Proteomics: September 14-18, 2013, Yokohama, Japan Proteomics 2014, 14 (9) 975-88 10.1002/pmic.201400041
-
(2014)
Proteomics
, vol.14
, Issue.9
, pp. 975-988
-
-
Aebersold, R.1
Bader, G.D.2
Edwards, A.M.3
Van Eyk, J.4
Kussman, M.5
Qin, J.6
Omenn, G.S.7
-
11
-
-
84876917161
-
Chapter 15: Disease gene prioritization
-
Bromberg, Y. Chapter 15: Disease gene prioritization PLoS Comput. Biol. 2013, 9 (4) e1002902 10.1371/journal.pcbi.1002902
-
(2013)
PLoS Comput. Biol.
, vol.9
, Issue.4
, pp. e1002902
-
-
Bromberg, Y.1
-
12
-
-
33646568805
-
Gene prioritization through genomic data fusion
-
Aerts, S.; Lambrechts, D.; Maity, S.; Van Loo, P.; Coessens, B.; De Smet, F.; Tranchevent, L. C.; De Moor, B.; Marynen, P.; Hassan, B.; Carmeliet, P.; Moreau, Y. Gene prioritization through genomic data fusion Nat. Biotechnol. 2006, 24 (5) 537-44 10.1038/nbt1203
-
(2006)
Nat. Biotechnol.
, vol.24
, Issue.5
, pp. 537-544
-
-
Aerts, S.1
Lambrechts, D.2
Maity, S.3
Van Loo, P.4
Coessens, B.5
De Smet, F.6
Tranchevent, L.C.7
De Moor, B.8
Marynen, P.9
Hassan, B.10
Carmeliet, P.11
Moreau, Y.12
-
13
-
-
84942410371
-
Prioritizing proteomics assay development for clinical translation
-
Lam, M. P.; Venkatraman, V.; Cao, Q.; Wang, D.; Dincer, T. U.; Lau, E.; Su, A. I.; Xing, Y.; Ge, J.; Ping, P.; Van Eyk, J. E. Prioritizing proteomics assay development for clinical translation J. Am. Coll. Cardiol. 2015, 66 (2) 202-4 10.1016/j.jacc.2015.04.072
-
(2015)
J. Am. Coll. Cardiol.
, vol.66
, Issue.2
, pp. 202-204
-
-
Lam, M.P.1
Venkatraman, V.2
Cao, Q.3
Wang, D.4
Dincer, T.U.5
Lau, E.6
Su, A.I.7
Xing, Y.8
Ge, J.9
Ping, P.10
Van Eyk, J.E.11
-
14
-
-
84994656557
-
-
BD2KPubMed (accessed Apr 10)
-
BD2KPubMed http://www.heartproteome.org/pubmed/ (accessed Apr 10, 2015).
-
(2015)
-
-
-
16
-
-
58149347308
-
Gene Prospector: An evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases
-
Yu, W.; Wulf, A.; Liu, T.; Khoury, M. J.; Gwinn, M. Gene Prospector: an evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases BMC Bioinf. 2008, 9, 528 10.1186/1471-2105-9-528
-
(2008)
BMC Bioinf.
, vol.9
, pp. 528
-
-
Yu, W.1
Wulf, A.2
Liu, T.3
Khoury, M.J.4
Gwinn, M.5
-
17
-
-
84859339977
-
Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database
-
andMe Genetic Epidemiology of Parkinson's Disease, C. International Parkinson's Disease Genomics, C. Parkinson's Disease, G. C. Wellcome Trust Case Control, C. Young, P. Tanzi, R. E. Khoury, M. J. Zipp, F. Lehrach, H. Ioannidis, J. P. Bertram, L
-
Lill, C. M.; Roehr, J. T.; McQueen, M. B.; Kavvoura, F. K.; Bagade, S.; Schjeide, B. M.; Schjeide, L. M.; Meissner, E.; Zauft, U.; Allen, N. C.; Liu, T.; Schilling, M.; Anderson, K. J.; Beecham, G.; Berg, D.; Biernacka, J. M.; Brice, A.; DeStefano, A. L.; Do, C. B.; Eriksson, N.; Factor, S. A.; Farrer, M. J.; Foroud, T.; Gasser, T.; Hamza, T.; Hardy, J. A.; Heutink, P.; Hill-Burns, E. M.; Klein, C.; Latourelle, J. C.; Maraganore, D. M.; Martin, E. R.; Martinez, M.; Myers, R. H.; Nalls, M. A.; Pankratz, N.; Payami, H.; Satake, W.; Scott, W. K.; Sharma, M.; Singleton, A. B.; Stefansson, K.; Toda, T.; Tung, J. Y.; Vance, J.; Wood, N. W.; Zabetian, C. P.; andMe Genetic Epidemiology of Parkinson's Disease, C.; International Parkinson's Disease Genomics, C.; Parkinson's Disease, G. C.; Wellcome Trust Case Control, C.; Young, P.; Tanzi, R. E.; Khoury, M. J.; Zipp, F.; Lehrach, H.; Ioannidis, J. P.; Bertram, L. et al. Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database PLoS Genet. 2012, 8 (3) e1002548 10.1371/journal.pgen.1002548
-
(2012)
PLoS Genet.
, vol.8
, Issue.3
, pp. e1002548
-
-
Lill, C.M.1
Roehr, J.T.2
McQueen, M.B.3
Kavvoura, F.K.4
Bagade, S.5
Schjeide, B.M.6
Schjeide, L.M.7
Meissner, E.8
Zauft, U.9
Allen, N.C.10
Liu, T.11
Schilling, M.12
Anderson, K.J.13
Beecham, G.14
Berg, D.15
Biernacka, J.M.16
Brice, A.17
Destefano, A.L.18
Do, C.B.19
Eriksson, N.20
Factor, S.A.21
Farrer, M.J.22
Foroud, T.23
Gasser, T.24
Hamza, T.25
Hardy, J.A.26
Heutink, P.27
Hill-Burns, E.M.28
Klein, C.29
Latourelle, J.C.30
Maraganore, D.M.31
Martin, E.R.32
Martinez, M.33
Myers, R.H.34
Nalls, M.A.35
Pankratz, N.36
Payami, H.37
Satake, W.38
Scott, W.K.39
Sharma, M.40
Singleton, A.B.41
Stefansson, K.42
Toda, T.43
Tung, J.Y.44
Vance, J.45
Wood, N.W.46
Zabetian, C.P.47
more..
-
18
-
-
79951499644
-
Too many roads not taken
-
Edwards, A. M.; Isserlin, R.; Bader, G. D.; Frye, S. V.; Willson, T. M.; Yu, F. H. Too many roads not taken Nature 2011, 470 (7333) 163-5 10.1038/470163a
-
(2011)
Nature
, vol.470
, Issue.7333
, pp. 163-165
-
-
Edwards, A.M.1
Isserlin, R.2
Bader, G.D.3
Frye, S.V.4
Willson, T.M.5
Yu, F.H.6
-
19
-
-
84871602426
-
Annotating cancer variants and anti-cancer therapeutics in reactome
-
Milacic, M.; Haw, R.; Rothfels, K.; Wu, G.; Croft, D.; Hermjakob, H.; D'Eustachio, P.; Stein, L. Annotating cancer variants and anti-cancer therapeutics in reactome Cancers 2012, 4, 1180-211 10.3390/cancers4041180
-
(2012)
Cancers
, vol.4
, pp. 1180-1211
-
-
Milacic, M.1
Haw, R.2
Rothfels, K.3
Wu, G.4
Croft, D.5
Hermjakob, H.6
D'Eustachio, P.7
Stein, L.8
-
20
-
-
84976870113
-
The Reactome pathway Knowledgebase
-
Fabregat, A.; Sidiropoulos, K.; Garapati, P.; Gillespie, M.; Hausmann, K.; Haw, R.; Jassal, B.; Jupe, S.; Korninger, F.; McKay, S.; Matthews, L.; May, B.; Milacic, M.; Rothfels, K.; Shamovsky, V.; Webber, M.; Weiser, J.; Williams, M.; Wu, G.; Stein, L.; Hermjakob, H.; D'Eustachio, P. The Reactome pathway Knowledgebase Nucleic Acids Res. 2016, 44 (D1) D481-7 10.1093/nar/gkv1351
-
(2016)
Nucleic Acids Res.
, vol.44
, Issue.D1
, pp. D481-D487
-
-
Fabregat, A.1
Sidiropoulos, K.2
Garapati, P.3
Gillespie, M.4
Hausmann, K.5
Haw, R.6
Jassal, B.7
Jupe, S.8
Korninger, F.9
McKay, S.10
Matthews, L.11
May, B.12
Milacic, M.13
Rothfels, K.14
Shamovsky, V.15
Webber, M.16
Weiser, J.17
Williams, M.18
Wu, G.19
Stein, L.20
Hermjakob, H.21
D'Eustachio, P.22
more..
-
21
-
-
0036649742
-
Association of genes to genetically inherited diseases using data mining
-
Perez-Iratxeta, C.; Bork, P.; Andrade, M. A. Association of genes to genetically inherited diseases using data mining Nat. Genet. 2002, 31 (3) 316-9 10.1038/ng895
-
(2002)
Nat. Genet.
, vol.31
, Issue.3
, pp. 316-319
-
-
Perez-Iratxeta, C.1
Bork, P.2
Andrade, M.A.3
-
22
-
-
84884507478
-
CoCiter: An efficient tool to infer gene function by assessing the significance of literature co-citation
-
Qiao, N.; Huang, Y.; Naveed, H.; Green, C. D.; Han, J. D. CoCiter: an efficient tool to infer gene function by assessing the significance of literature co-citation PLoS One 2013, 8 (9) e74074 10.1371/journal.pone.0074074
-
(2013)
PLoS One
, vol.8
, Issue.9
, pp. e74074
-
-
Qiao, N.1
Huang, Y.2
Naveed, H.3
Green, C.D.4
Han, J.D.5
-
23
-
-
36448992941
-
Functional profiling of microarray experiments using text-mining derived bioentities
-
Minguez, P.; Al-Shahrour, F.; Montaner, D.; Dopazo, J. Functional profiling of microarray experiments using text-mining derived bioentities Bioinformatics 2007, 23 (22) 3098-9 10.1093/bioinformatics/btm445
-
(2007)
Bioinformatics
, vol.23
, Issue.22
, pp. 3098-3099
-
-
Minguez, P.1
Al-Shahrour, F.2
Montaner, D.3
Dopazo, J.4
-
24
-
-
84979866002
-
PolySearch2: A significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more
-
Liu, Y.; Liang, Y.; Wishart, D. PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more Nucleic Acids Res. 2015, 43, W535-W542 10.1093/nar/gkv383
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. W535-W542
-
-
Liu, Y.1
Liang, Y.2
Wishart, D.3
|