Correction of profiles of in-situ chlorophyll fluorometry for the contribution of fluorescence originating from non-algal matter

Limnology and Oceanography: Methods

Volumn 15, Issue 1, 2017, Pages 80-93

  Xing, Xiaogang ^a,b   Claustre, Hervé ^c   Boss, Emmanuel ^d   Roesler, Collin ^e   Organelli, Emanuele ^c,f   Poteau, Antoine ^c   Barbieux, Marie ^c   D’Ortenzio, Fabrizio ^c  

^a Chongqing Institute of Geology and Mineral Resources   (China)

^b UNIVERSITÉ LAVAL   (Canada)

^c SORBONNE UNIVERSITÉ   (France)

^d UNIVERSITY OF MAINE   (United States)

^e BOWDOIN COLLEGE   (United States)

^f PLYMOUTH MARINE LABORATORY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84991735131     PISSN: None     EISSN: 15415856     Source Type: Journal    
DOI: 10.1002/lom3.10144     Document Type: Article

References (45)

1. Blain, S., S. Renaut, X. Xing, H. Claustre, and C. Guinet. 2013. Instrumented elephant seals reveal the seasonality in chlorophyll and light-mixing regime in the ironfertilized Southern Ocean. Geophys. Res. Lett. 40: 6368-6372. doi:10.1002/2013GL058065
2. Breves W., R. Heuermann, and R. Reuter. 2003. Enhanced red fluorescence emission in the oxygen minimum zone of the Arabian Sea. Ocean Dyn. 53: 86-97. doi:10.1007/s10236-003-0026-y
3. Broenkow, W. W., A. J. Lewitus, M. A. Yarbrough, and R. T. Krenz. 1983. Particle fluorescence and bioluminescence distributions in the eastern tropical Pacific. Nature 302: 329-331. doi:10.1038/302329a0
4. Boss, E., D. Swift, L. Taylor, P. Brickley, R. Zaneveld, S. Riser, M. J. Perry, and P. G. Strutton. 2008. Observations of pigment and particle distributions in the western North Atlantic from an autonomous float and ocean color satellite. Limnol. Oceanogr. 53: 2112-2122. doi:10.4319/lo.2008.53.5_part_2.2112
5. Boss, E., and M. Behrenfeld. 2010. In situ evaluation of the initiation of the North Atlantic phytoplankton bloom. Geophys. Res. Lett. 37: L18603. doi:10.1029/2010GL0 44174
6. Cetinić, I., G. Toro-Farmer, M. Ragan, C. Oberg, and B. H. Jones. 2009. Calibration procedure for Slocum glider deployed optical instruments. Opt. Express 17: 15420-15430. doi:10.1364/OE.17.015420
7. Claustre, H., A. Sciandra, and D. Vaulot. 2008. Introduction to the special section: Bio-optical and biogeochemical conditions in the South East Pacific in late 2004 - the BIOSOPE program. Biogeosciences 5: 679-691. doi:10.5194/bg-5-679-2008
8. Coble, P. G. 1996. Characterization of marine and terrestrial DOM in seawater using excitation-emission matrix spectroscopy. Mar. Chem. 51: 325-346. doi:10.1016/0304-4203(95)00062-3
9. Coble, P. G. 2007. Marine optical biogeochemistry: The chemistry of ocean color. Chem. Rev. 107: 402-418. doi:10.1021/cr0503501
10. Cullen, J. J. 1982. The deep chlorophyll maximum: Comparing vertical profiles of chlorophyll a. Can. J. Fish. Aquat. Sci. 9: 791-803. doi:10.1139/f82-108
11. De La Fuente, P., C. Marrasé, A. Canepa, X. Antón Álvarez-Salgado, M. Gasser, N. M. Fajar, C. Romera-Castillo, and J. L. Pelegrí. 2014. Does a general relationship exist between fluorescent dissolved organic matter and microbial respiration? - the case of the dark equatorial Atlantic Ocean. Deep-Sea Res. I 89: 44-55. doi:10.1016/j.dsr.2014.03.007
12. Falkowski, P., and D. A. Kiefer. 1985. Chlorophyll a fluorescence in phytoplankton: Relationship to photosynthesis and biomass. J. Plankton Res. 7: 715-731. doi:10.1093/plankt/7.5.715
13. Geider, R. J., H. L. MacIntyre, and T. Kana. 1998. A dynamic regulatory model of phytoplanktonic acclimation to light, nutrients, and temperature. Limnol. Oceanogr. 43: 679-694. doi:10.4319/lo.1998.43.4.0679
14. Goldman, E. A., E. M. Smith, and T. L. Richardson. 2013. Estimation of chromophoric dissolved organic matter (CDOM) and photosynthetic activity of estuarine phytoplankton using a multiple-fixed-wavelength spectral fluorometer. Water Res. 47: 1616-1630. doi:10.1016/j.watres. 2012.12.023
15. Guinet, C., and others. 2013. Calibration procedures and first data set of Southern Ocean chlorophyll-a profiles collected by elephant seal equipped with a newly developed CTD-fluorescence tags. Earth Syst. Sci. Data 5: 15-29. doi:10.5194/essd-5-15-2013
16. Herbland. A. 1978. The soluble fluorescence in the open sea:Distribution and ecological significance in the Equatorial Atlantic Ocean. J Exp. Mar. Biol. Ecol. 32: 275-284.
17. Jørgensen, L., C. A. Stedmon, T. Kragh, S. Markager, M. Middelboe, and M. Søndergaard. 2011. Global trends in the fluorescence characteristics and distribution of marine dissolved organic matter. Mar. Chem. 126: 139-148. doi:10.1016/j.marchem.2011.05.002
18. Kinkade, C. S., J. Marra, T. D. Dickey, C. Langdon, D. E. Sigurdson, and R. Weller. 1999. Diel bio-optical variability in the Arabian Sea as observed from moored sensors. Deep-Sea Res. II 45: 1813-1832. doi:10.1016/S0967-0645(99)00045-4
19. Kring, S. A., S. E. Figary, G. L. Boyer, S. B. Watson, and M. R. Twiss. 2014. Rapid in situ measures of phytoplankton communities using the bbe FluoroProbe: Evaluation of spectral calibration, instrument intercompatibility, and performance range. Can. J. Fish. Aquat. Sci. 71: 1087-1095. doi:10.1139/cjfas-2013-0599
20. Lewitus, A. J., and W. W. Broenkow. 1985. Intermediate depth pigment maxima in oxygen minimum zones. Deep-Sea Res. 32: 1101-1115. doi:10.1016/0198-0149(85)90065-2
21. Lorenzen, C. 1966. A method for the continuous measurement of in vivo chlorophyll concentration. Deep-Sea Res. 13: 223-227. doi:10.1016/0011-7471(66)91102-8
22. MacIntyre, H. L., E. Lawrenz, and T. L. Richardson. 2011. Taxonomic discrimination of phytoplankton by spectral fluorescence, p. 129-169. In D. J. Suggett, O. Prasil, and M. A. Borowitzka [eds.], Chlorophyll a fluorescence measurements in aquatic sciences: Methods and applications. Springer.
23. Marra, J. and C. Langdon. 1993. An evaluation of an in situ fluorometer for the estimation of chlorophyll a. Technical Report LDEO-93-1. Lamont-Doherty Earth Observatory, Palisades, 41 p.
24. Mignot, A., H. Claustre, J. Uitz, A. Poteau, F. D’Ortenzio, and X. Xing. 2014. Understanding the seasonal dynamics of phytoplankton biomass and DCM in oligotrophic environments:A Bio-Argo float investigation. Global Biogeochem. Cycles 28: 856-876. doi:10.1002/2013GB004781
25. Monterey, G., and S. Levitus. 1997. Seasonal variability of mixed layer depth for the world ocean. NOAA Atlas NESDIS 14, 100p. Natl. Oceanic and Atmos. Admin.
26. Mroczka, J. 1988. Temperature stabilization of light-emitting diode radiation. J. Phys. E, Sci. Instrum. 21: 306-309. doi:10.1088/0022-3735/21/3/014
27. Nelson, N. B., D. A. Siegel, and A. F. Michaels. 1998. Seasonal dynamics of colored dissolved material in the Sargasso Sea. Deep-Sea Res. I 45: 931-957. doi:10.1016/S0967-0637(97)00106-4
28. Nelson, N. B., and J. M. Gauglitz. 2016. Optical signatures of dissolved organic matter transformation in the global ocean. Front. Mar. Sci. 2: 118. doi:10.3389/fmars.2015.00118
29. Niewiadomska, K., H. Claustre, L. Prieur, and F. D’Ortenzio. 2008. Submesoscale physical-biogeochemical coupling across the Ligurian current (northwestern Mediterranean) using a bio-optical glider. Limnol. Oceanogr. 53: 2210-2225. doi:10.4319/lo.2008.53.5_part_2.2210
30. Organelli, E., and others. 2016. A novel near real-time qualitycontrol procedure for radiometric profiles measured by Bio-Argo floats: Protocols and performances. J. Atmos. Oceanic Technol. 33: 937-951. doi:10.1175/JTECH-D-15-0193.1
31. Parker, R. R. 1981. A note on the so-called "soluble fluorescence" of chlorophyll a in natural waters. Deep-Sea Res. A 28: 1231-1235. doi:10.1016/0198-0149(81)90059-5
32. Pettigrew, N. R., and C. S. Roesler. 2005. Implementing the Gulf of Maine Ocean Observing System (GoMOOS). IEEE proceedings of Oceans '05 (Europe), Brest France, p. 1234-1241.
33. Platt, T. 1972. Local phytoplankton abundance and turbulence. Deep-Sea Res. 19: 183-187. doi:10.1016/0011-7471(72)90029-0
34. Proctor, C. W., and C. S. Roesler. 2010. New insights on obtaining phytoplankton concentration and composition from in situ multispectral Chlorophyll fluorescence. Limnol. Oceanogr. Methods 8: 695-708. doi:10.4319/lom.2010.8.695
35. Ras, J., J. Uitz, and H. Claustre. 2008. Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: Comparison between in situ and modelled data. Biogeosciences 5: 353-369. doi:10.5194/bg-5-353-2008
36. Röttgers, R., and B. P. Koch. 2012. Spectroscopic detection of a ubiquitous dissolved pigment degradation product in subsurface waters of the global ocean. Biogeosciences 9: 2585-2596. doi:10.5194/bg-9-2585-2012
37. Sackmann, B. S., M. J. Perry, and C. C. Eriksen. 2008. Seaglider observations of variability in daytime fluorescence quenching of chlorophyll-a in Northeastern Pacific coastal waters, Biogeosci. Discuss. 5: 2839-2865. doi:10.5194/bgd-5-2839-2008
38. Schmechtig C., H. Claustre, A. Poteau, and F. D’Ortenzio. 2014. Bio-Argo quality control manual for the Chlorophyll-A concentration, Version 1.0, 16 p. doi:10.13155/35385
39. Sullivan, J., M. Twardowski, J. Zaneveld, and C. Moore. 2013. Measuring optical backscattering in water, p. 189-224. In A. A. Kokhanovsky [eds.], Light Scattering Reviews 7: Radiative Transfer and Optical Properties of Atmosphere and Underlying Surface. Springer.
40. Twiss, M. R. 2011. Variations in chromophoric dissolved organic matter and its influence on the use of pigmentspecific fluorimeters in the Great Lakes. J. Great Lakes Res. 37: 1242131. doi:10.1016/j.jglr.2010.11.011
41. Vodacek, A., N. V. Blough, M. D. DeGrandpre, E. T. Peltzer, and R. K. Nelson. 1997. Seasonal variation of CDOM and DOC in the Middle Atlantic Bight: Terrestrial inputs and photooxidation. Limnol. Oceanogr. 42: 674-686. doi:10.4319/lo.1997.42.4.0674
42. Wong, A., R. Keeley, T. Carval, and the Argo Data Management Team. 2015. Argo quality control manual for CTD and trajectory data. Version 3.0, 56 p. doi:10.13155/33951
43. Xing, X., A. Morel, H. Claustre, D. Antoine, F. D’Ortenzio, A. Poteau, and A. Mignot. 2011. Combined processing and mutual interpretation of radiometry and fluorimetry from autonomous profiling Bio-Argo Floats: Chlorophyll a retrieval. J. Geophys. Res. 116: C06020. doi:10.1029/2010JC006899
44. Xing, X., H. Claustre, S. Blain, F. D’Ortenzio, D. Antoine, J. Ras, and C. Guinet. 2012. Quenching correction for in vivo chlorophyll fluorescence acquired by autonomous platforms: A case study with instrumented elephant seals in the Kerguelen region (Southern Ocean). Limnol. Oceanogr. Methods 10: 483-495. doi:10.4319/lom.2012.10.483
45. Xing, X., H. Claustre, J. Uitz, A. Mignot, A. Poteau, and H. Wang. 2014. Seasonal variations of bio-optical properties and their interrelationships observed by Bio-Argo floats in the subpolar North Atlantic. J. Geophys. Res. Oceans 119: 7372-7388. doi:10.1002/2014JC010189