New insights on obtaining phytoplankton concentration and composition from in situ multispectral Chlorophyll fluorescence

Limnology and Oceanography: Methods

Volumn 8, Issue DECEMBER, 2010, Pages 695-708

  Proctor, Christopher W ^a   Roesler, Collin S ^a  

^a UNIVERSITY OF MAINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 79251495446     PISSN: 15415856     EISSN: 15415856     Source Type: Journal    
DOI: 10.4319/lom.2010.8.695     Document Type: Article

References (34)

1. Andersen, R. A. 2005. Algal culturing techniques. Elsevier/Academic Press.
2. Belzile, C., C. S. Roesler, J. P. Christensen, N. Shakhova, and I. Semiletov. 2006. Fluorescence measured using the WETStar DOM fluorometer as a proxy for dissolved matter absorption. Estuar. Coast. Shelf Sci. 67:441-449 [doi:10.1016/j.ecss.2005.11.032].
3. Bricaud, A., A. Morel, and L. Prieur. 1986. Absorption by dissolved organic matter in the sea (yellow substance) in the UV and visible domains. Limnol. Oceanogr. 26:43-53 [doi:10.4319/lo.1981.26.1.0043].
4. Coble, P. G. 2007. Marine optical biogeochemistry: The chemistry of ocean color. Chem. Rev. 107(2):402-418 [doi: 10.1021/cr050350].
5. Cullen, J. J. 1982. The deep Chlorophyll maximum: Comparing vertical profiles of Chlorophyll. Can. J. Fish. Aquat. Res. 39:791-803 [doi:10.1139/f82-108].
6. Cullen, J. J. 1990. On models of growth and photosynthesis in phytoplankton. Deep Sea Res. 37:667-683 [doi:10.1016/0198-0149(90)90097-F].
7. Cullen, J. J., and M. R. Lewis. 1988. The kinetics of algal photoadaptation in the context of vertical mixing. J. Plankton Res. 10:1039-1063 [doi:10.1093/plankt/10.5.1039].
8. Cullen, J. J., and R. F. Davis. 2003. The blank can make a big difference in oceanographic measurements. Limnol. Oceanogr. Bull. 12(2):29-35.
9. Dickey, T. 1991. The emergence of concurrent high-resolution physical and bio-optical measurements in the upper ocean. Rev. Geophys. 29:383-413 [doi:10.1029/91RG00578].
10. Falkowski, P. G., M. E. Katz, A. H. Knoll, A. Quigg, J. A. Raven, O. Schofield, and F. J. R. Taylor. 2004. The evolution of modern eukaryotic phytoplankton. Science 305(5682):354-360. [doi: 10.1126/science.1095964].
11. Falkowski, P. G., and J. A. Raven. 2007. Aquatic photosynthesis. Princeton Univ. Press.
12. Holm-Hansen, O., C. J. Lorenzen, R. W. Holmes, and J. D. Strickland. 1965. Fluorometric determination of Chlorophyll. J. Cons. Cons. Int. Explor. Mer 30:3-15.
13. Kennebec Water District. 2005. China water quality, algae blooms. Kennebec Water District.
14. Kirk, J. T. O. 1994. Light and photosynthesis in aquatic ecosystems. Cambridge Univ. Press [doi:10.1017/CBO9780 5116 23370].
15. Kishino, M., M. Takahashi, N. Okami, and S. Ichimura. 1985. Estimation of the spectral absorption coefficients of phytoplankton in the sea. Bull. Mar. Sci. 37:634-642.
16. Lorenzen, C. J. 1966. A method for the continuous measurement of the in vivo Chlorophyll concentration. Deep-Sea Res. 13:223-227.
17. Lutz, V. A., S. Sathyendranath, E. J. H. Head, and W. K. W. Li. 2001. Changes in in vivo absorption and fluorescence spectra with growth irradiance in three species of phytoplankton. J. Plankton Res. 23:555-569 [doi:10.1093/plankt/23.6.555].
18. Marra, J. 1997. Analysis of diel variability in Chlorophyll fluorescence. J. Mar. Res. 55:767-784 [doi:10.1357/0022 2409 73224274].
19. Marra, J., and C. Langdon. 1993. An evaluation of an in situ fluorometer for the estimation of Chlorophyll a. Tech. Rep. LDEO-93-1. Lamont-Doherty Earth Observatory, Palisades. NY.
20. Mitchell, B. G. 1990. Algorithms for determining the absorption coefficient of aquatic particulates using the quantitative filter technique (QFT), pp. 137-148. In Ocean Optics 10, Proc. International Society for Optical Engineering 1302.
21. Morel, A. 1974. Optical properties of pure water and pure seawater. pp. 1-24. In N. G. Jerlov and E. Steeman-Nielsen (eds.), Optical aspects of oceanography. Academic.
22. Morel, A., and A. Bricaud. 1981. Thoeretical results concerning light absorption in a discrete medium and application to specific absorption of phytoplankton. Deep-Sea Res. 28:1375-1393 [doi:10.1016/0198-0149(81)90039-X].
23. Neale, P. J., J. J. Cullen, and C. M. Yentsch. 1989. Bio-optical inferences from Chlorophyll a fluorescence: What kind of fluorescence is measured in a flow cytometer? Limnol. Oceanogr. 34:1739:1748 [doi:10.4319/lo.1989.34.8.1739].
24. Pegau, W. S., D. Gray, and J. R. V. Zaneveld. 1997. Absorption of visible and near-infrared light in water: the dependence on temperature and salinity. Appl. Optics 36:6035-6046 [doi:10.1364/AO.36.006035].
25. Poryvkina, L., S. Babichenko, and A. Leeben. 2000. Analysis of phytoplankton pigments by excitation spectra of fluorescence, pp. 224-232. In EARSeL-SIG-Workshop LIDAR. Institute of Ecology/LDI, Tallinn, Estonia.
26. Roesler, C. S. 1998. Theoretical and experimental approaches to improve the accuracy of particulate absorption coefficients from the Quantitative Filter Technique. Limnol. Oceanogr. 43:1649-1660 [doi:10.4319/lo.1998.43.7.1649].
27. Roesler, C. S., and E. Boss. 2008. In situ measurement of the inherent optical properties (IOPs) and potential for harmful algal bloom (HAB) detection and coastal ecosystem observations, Chapter 5, pp. 153-206. In M. Babin, C. S. Roesler, and J. Cullen [eds.], Real-time coastal observing systems for marine ecosystem dynamics and harmful algal blooms: theory, instrumentation and modeling. UNESCO.
28. Roesler, C. S., M. J. Perry, and K. L. Carder. 1989. Modeling in situ phytoplankton absorption from total absorption spectra. Limnol. Oceanogr. 34:1512-1525 [doi:10.4319/lo.1989. 34. 8.1510].
29. Roesler, C. S., A. H. Barnard, G. Aiken, T. Huntington, W. B. Balch, and H. Xue. 2006. Using optical proxies for biogeochemical properties to study land coverage and terrestrial inputs of organic carbon into coastal waters from the Penobscot Watershed to the Gulf of Maine, pp. 9-13. In Proceeding of Ocean Optics XVIII, October, Montreal.
30. Sathyendranath, S., L. Lazzara, and L. Prieur. 1987. Variations in the spectral values of specific absorption of phytoplankton. Limnol. Oceanogr. 32(2):403-415 [doi:10.4319/lo.1987.32.2.0403].
31. Strickland, J. D. H., and T. R. Parsons. 1968. A practical handbook of seawater analysis. Pigment analysis. Bull. Fish. Res. Bd. Canada, 167.
32. UNESCO. 1966. Determinations of photosynthetic pigments in seawater, Rep. SCOR/UNESCO WG 17, UNESCO Monogr. Oceanogr. Methodol., 1, Paris.
33. University of Maine. PEARL. .
34. Yentsch, C. S., and D. W. Menzel. 1963. A method for the determination of phytoplankton Chlorophyll and pheophytin by fluorescence. Deep-Sea Res. 10:221-231.