Does a general relationship exist between fluorescent dissolved organic matter and microbial respiration?-The case of the dark equatorial Atlantic Ocean

Deep-Sea Research Part I: Oceanographic Research Papers

Volumn 89, Issue , 2014, Pages 44-55

  De La Fuente, Patricia ^a   Marrasé, Celia ^a   Canepa, Antonio ^a   Anton Alvarez Salgado X ^b   Gasser, Marc ^a   Fajar, Noelia M ^b   Romera Castillo, Cristina ^c   Pelegrí, Josep L ^a  

^a INSTITUT DE CIÈNCIES DEL MAR   (Spain)

^b INSTITUTO DE INVESTIGACIONES MARINAS   (Spain)

^c FLORIDA INTERNATIONAL UNIVERSITY   (United States)

Author keywords

AOU; Equatorial Atlantic Ocean; Fluorescent dissolved organic matter; Water masses

Indexed keywords

BIOLOGICAL MATERIALS; FLUORESCENCE;

AOU; APPARENT OXYGEN UTILIZATIONS; ATLANTIC OCEAN; DISSOLVED ORGANIC MATTERS; FLUORESCENCE INTENSITIES; MICROBIAL RESPIRATION; MULTIPLE REGRESSIONS; WATER MASS;

OCEANOGRAPHY;

DISSOLVED ORGANIC MATTER; DISSOLVED OXYGEN; FLUORESCENCE; MICROBIAL ACTIVITY; RESPIRATION; SPATIAL DISTRIBUTION; WATER MASS;

ATLANTIC OCEAN; ATLANTIC OCEAN (EQUATORIAL);

EID: 84900812211     PISSN: 09670637     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dsr.2014.03.007     Document Type: Article

References (62)

1. Álvarez-Salgado X.A., Nieto-Cid M., Álvarez M., Pérez F.F., Morin P., Mercier H. New insights on the mineralization of dissolved organic matter in central, intermediate, and deep-water masses of the northeast North Atlantic. Limnol. Oceanogr 2013, 58(2):681-696. 10.4319/lo.2013.58.2.0000.
2. Andrew A.A., Del Vecchio R., Subramaniam A., Blough N.V Chromophoric dissolved organic matter (CDOM) in the Equatorial Atlantic Ocean: optical properties and their relation to CDOM structure and source. Mar. Chem 2013, 148(33-43). 10.1016/j.marchem.2012.11.001.
3. o30S. Deep Sea Res. Part I 1998, 45:829-872.
4. Benson B.B., Krause D. The concentration and isotopic fractionation of oxygen dissolved in freshwater and seawater in equilibrium with the atmosphere. Limnol. Oceanogr. 1984, 29(3):620-632.
5. Carlson C.A., et al. Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin. Deep Sea Res. Part II 2010, 57:1433-1445. 10.1016/j.dsr2.2010.02.013.
6. Castro C.G., Nieto-Cid M., Álvarez-Salgado X.A., Pérez F.F. Local remineralization patterns in the mesopelagic zone of the eastern North Atlantic, off the NW Iberian Peninsula. Deep Sea Res. Part I 2006, 53:1925-1940.
7. Chen C.T.A. Microbial carbon pump: additional considerations. Nat. Rev. Microbiol 2011, 10.1038/nrmicro2386-c4.
8. Chen R.F., Bada J.L. The fluorescence of dissolved organic matter in seawater. Mar. Chem. 1992, 37:191-221.
9. Coble P.G., Green S.A., Blough N.V., Gagosian R.B. Characterization of dissolved organic matter in the Black Sea by fluorescence spectroscopy. Nature 1990, 348:432-435.
10. Coble P.G. Characterization of marine and terrestrial DOM in seawater using excitation-emission matrix spectroscopy. Mar. Chem. 1996, 51:325-346.
11. Coble P.G. Marine optical biogeochemistry: the chemistry of ocean color. Chem. Rev 2007, 107:402-418.
12. Del Castillo C.E., Coble PG., Morell JM., López JM., Corredor JE. Analysis of the optical properties of the Orinoco River plume by absorption and fluorescence spectroscopy. Mar. Chem. 1999, 66:35-51.
13. Determann S., Reuter R., Willkomm R. Fluorescence matter in the eastern Atlantic Ocean: Part 2. Vertical profiles and relation to water masses. Deep Sea Res 1996, 43:345-360.
14. Dittmar T., Kattner G. The biogeochemistry of the river and shelf ecosystem of the Arctic Ocean: a review. Mar. Chem. 2003, 83:103-120.
15. Ducklow H, Harris R. Introduction to the JGOFS North Atlantic bloom experiment. Deep Sea Res 1993, 40:1-8.
16. Flugister FL. Atlantic Ocean Atlas of Temperature and Salinity Profiles and Data from the International Geophysical Year of 1957-1958. Atlas Series, Woods Hole Oceanographic Institution 1960, 1.
17. Hansell D.A., Carlson C.A., Repeta D.J., Reiner S. Dissolved organic matter in the ocean: new insights stimulated by a controversy. Oceanography 2009, 22:52-61. 10.5670/oceanog. 2009.109.
18. Hansell D.A. Recalcitrant dissolved organic carbon fractions. Annu. Rev. Mar. Sci 2013, 5:3.1-3.25.
19. Hayase K., Tsubota H., Sunada I. Relationships of fluorescence and AOU in three north Pacific water samples. Sci. Total Environ. 1989, 81/82:315-318.
20. Hayase K., Shinozuka N. Vertical distribution of fluorescent organic matter along with AOU and nutrients in the equatorial Central Pacific. Mar. Chem. 1995, 48:283-290.
21. Ito T., Follows M.J., Boyle E.A. Is AOU a good measure of respiration in the oceans?. Geophys. Res. Lett. 2004, 31. (17305-17305).
22. Jackett T.R., McDougall T.J. A neutral density variable for the world[U+05F3]s ocean. J. Phys. Oceanogr. 1997, 27:237-263.
23. Jiao N., Herndl G.J., Hansell D.A., Benner R., Kattner G., Wilhelm S.W., Kirchman D.L., Weinbauer M.G., Luo T., Chen F. Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nat. Rev. Microbiol. 2010, 8:593-599.
24. Jørgensen L., Stedmon C.A., Kragh T., Markager S., Middelboe M., Sφndergaard M. Global trends in the fluorescence characteristics and distribution of marine dissolved organic matter. Mar. Chem. 2011, 126:139-148.
25. Karstensen J., Stramma L., Visbeck M. Oxygen minimum zones in the eastern tropical Atlantic and Pacific oceans. Prog. Oceanogr. 2008, 77:331-350.
26. Kramer G.D., Herndl G.J. Photo- and bioreactivity of chromophoric dissolved organic matter produced by marine bacterioplankton. Aquat. Microb. Ecol. 2004, 36:239-246.
27. Lappo S.S., Lozovatsky I.D., Morozov E.G., Sokov A.V., Shapovalov S.M. Variability of water structure in the equatorial Atlantic. Dokl. Earth Sci. Sect 2001, 379:739-743.
28. Lawaetz A.J., Stedmon C.A. Fluorescence intensity calibration using the Raman scatter peak of water. Appl. Spectrosc. 2009, 63(8):936-940.
29. Legendre P., Legendre L. Numerical Ecology. Number 20 in Developments in Environmental Modelling 1998, Elsevier, Amsterdam. second ed.
30. Logan M. Biostatistical design and analysis using R. A Practical Guide 2010, 546. Wiley-Blackwell, Oxford, UK.
31. Machín F., Pelegrí J.L. Northward penetration of Antarctic Intermediate Water off northwest Africa. J. Phys. Oceanogr. 2009, 39:512-535.
32. Mamayev O.I Temperature-Salinity Analysis of World Ocean Waters. Amsterdam-Oxford-New York 1975, 374. Elsevier Scientific.
33. McDougall, T.J., Barker, P.M., 2011. Getting Started with TEOS-10 and the Gibbs Seawater (GSW) Oceanographic Toolbox, 28 pp., SCOR/IAPSO WG127, 978-0-646-55621-5.
34. Mopper K., Zhou X., Kieber R.J., Kieber D.J., Sikorski R.J., Jones R.D. Photochemical degradation of dissolved organic carbon and its impact in oceanic carbon cycle. Nature 1991, 353:60-62.
35. Nelson N.B., Siegel D.A., Carlson C.A., Swan C., Smethie W.M., Khatiwala S. Hydrography of chromophoric dissolved organic matter in the North Atlantic. Deep Sea Res. Part I 2007, 54:710-731.
36. Nelson N.B., Siegel D.A., Carlson C.A., Swan C.M. Tracing global biogeochemical cycles and meridional overturning circulation using chromophoric dissolved organic matter. Geophys. Res. Lett. 2010, 37:L03610.
37. Nelson N.B., Siegel D.A. Global distribution and dynamics of chromophoric dissolved organic matter. Annu. Rev. Mar. Sci. 2013, 5:447-476.
38. Nieto-Cid M., Álvarez-Salgado Gago, J., X.A., Pérez F.F. DOM fluorescence a tracer for biogeochemical processes in a coastal upwelling system (NW Iberian Peninsula). Mar. Ecol. Prog. Ser. 2005, 297:33-50.
39. Nieto-Cid.M., Álvarez-Salgado X.A., Pérez F.F. Microbial and photochemical reactivity of fluorescent dissolved organic matter in a coastal upwelling system. Limnol. Oceanogr. 2006, 51:1391-1400.
40. Oudot C. Carbon data obtained during the R/V L[U+05F3]Atalante cruise in the Atlantic Ocean (WOCE Section A07, 13 February-19 March 1993). Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, US Department of Energy 1993, A07:1993b. Oak Ridge, Tennessee. http://cdiac.ornl.gov/ftp/oceans/a07woce/, 10.3334/CDIAC/otg.WOCE.
41. Orsi A.H., Johnson G.C., Bullister J.L. Circulation, mixing, and production of Antarctic Bottom Water. Prog. Oceanogr. 1999, 43:55-109.
42. Romera-Castillo C., Sarmento H., Álvarez-Salgado X.A., Gasol J.M., Marrasé C. Production of chromophoric dissolved organic matter by marine phytoplankton. Limnol. Oceanogr. 2010, 55(1):446-454.
43. Romera-Castillo C., Nieto-Cid M., Castro C.G., Marrasé C., Largier J., Barton E.D., Álvarez-Salgado X.A. Fluorescence: absorption coefficient ratio-tracing photochemical and microbial degradation processes affecting coloured dissolved organic matter in a coastal system. Mar. Chem. 2011, 125:26-38.
44. Romera-Castillo C., Sarmento H., Álvarez-Salgado X.A., Gasol J.M., Marrasé C. Net production/consumption of fluorescent coloured dissolved organic matter by natural bacterial assemblages growing on marine phytoplankton exudates. Appl. Environ. Microbiol. 2011, 77:7490-7498.
45. Core Team R R: A Language and Environment for Statistical Computing 2012, R Foundation for Statistical Computing, Vienna, Austria, (URL).
46. Salisbury J., Vandermark D., Campbell J., Hunt C., Wisser D., Reul N., Chapron B. Spatial and temporal coherence between Amazon River discharge, salinity, and light absorption by colored organic carbon in western tropical Atlantic surface waters. J. Geophys. Res. 2011, 116. 10.1029/2011JC006989.
47. oN. Sci. Mar. 2012, 76S1:189-207. (ISSN:0214-8358).
48. Sarafanov A., Sokov A., Demidov A. Water mass characteristics in the equatorial North Atlantic: a section nominally along 6.5°N, July 2000. J. Geophys. Res 2007, 112:C12023. 10.1029/2007JC004222.
49. Siedler G., Zangenberg N., Onken R., Morlière A. Seasonal changes in the tropical Atlantic circulation: observation and simulation of the Guinea Dome. J. Geophys. Res. 1992, 97:703-7150.
50. Siegel D., Maritorena S., Nelson N., Hansell D., Lorenzi-Kayser M. Global distribution and dynamics of colored dissolved and detrital organic materials. J. Geophys. Res. 2002, 107:3228.
51. Stedmon C.A., Markager S. Resolving the variability in dissolved organic matter fluorescence in temperate estuary and its catchment using PARAFAC analysis. Limnol. Oceanogr. 2005, 50:686-697.
52. Schlitzer, R., Ocean Data View, 2011. http://odv.awi.de.
53. Stramma L., Schott.F. The mean flow field of the tropical Atlantic Ocean. Deep Sea Res. Part II 1999, 46:279-303.
54. Stramma L. Expanding oxygen-minimum zones in the tropical oceans. Science 2008, 320:655.
55. Talley L.D., Pickard G.L., Emery W.J., Swift J.H. Descriptive Physical Oceanography: An Introduction 2011, 560. Elsevier, Boston. sixth ed.
56. Yamashita Y., Tsukasaki A., Nishida T., Tanoue E. Vertical and horizontal distribution of fluorescence dissolved organic matter in the Southern Ocean. Mar. Chem. 2007, 106:498-509.
57. Yamashita Y., Tanoue E. Production of bio-refractory fluorescent dissolved organic matter in the ocean interior. Nature 2008, 1:579-582.
58. Yamashita Y., Cory R.M., Nishioka J., Kuma K., Tanoue E., Jaffé R. Fluorescence characteristics of dissolved organic matter in the deep waters of the Okhotsk Sea and the northwestern North Pacific Ocean. Deep Sea Res. Part II 2010, 57:1478-1485. 10.1016/j.dsr2.2010.02.016.
59. Warton D.I., Duursma R.A., Falster D.S., Taskinen S. Smatr 3-an R package for estimation and inference about allometric lines. Methods Ecol. Evol. 2012, 3:257-259.
60. Weiss R.F. The solubility of nitrogen, oxygen and argon in water and seawater. Deep Sea Res. 1970, 17:721-735.
61. WOCE WOCE Operations Manual: Vol. 3, Sect. 3.1, Part 3.1.3: WHP Operations and Methods Oxygen Determination 1994, 12. Woods Hole, MA, USA, (Rev. 1, Nov. 1994).
62. Zuur A.F., Ieno E.N., Walker N.J., Saveliev A.A., Smith G.M. Mixed Effects Models and Extensions in Ecology with R. 2009, 574. Springer, New York.