-
1
-
-
84924071510
-
Measuring semantic similarities by combining gene ontology annotations and gene co-function networks
-
Peng, J. et al. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. BMC Bioinformatics 16, 44 (2015).
-
(2015)
BMC Bioinformatics
, vol.16
, pp. 44
-
-
Peng, J.1
-
2
-
-
84966570660
-
Extending gene ontology with gene association networks
-
Peng, J., Wang, T., Wang, J., Wang, Y. & Chen, J. Extending gene ontology with gene association networks. Bioinformatics 32, 1185-1194 (2016).
-
(2016)
Bioinformatics
, vol.32
, pp. 1185-1194
-
-
Peng, J.1
Wang, T.2
Wang, J.3
Wang, Y.4
Chen, J.5
-
3
-
-
79959898376
-
Prioritizing candidate disease genes by network-based boosting of genome-wide association data
-
Lee, I., Blom, U. M., Wang, P. I., Shim, J. E. & Marcotte, E. M. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. Genome research 21, 1109-1121 (2011).
-
(2011)
Genome Research
, vol.21
, pp. 1109-1121
-
-
Lee, I.1
Blom, U.M.2
Wang, P.I.3
Shim, J.E.4
Marcotte, E.M.5
-
4
-
-
76249105279
-
Genome-wide prioritization of disease genes and identification of diseasedisease associations from an integrated human functional linkage network
-
Linghu, B., Snitkin, E. S., Hu, Z., Xia, Y. & DeLisi, C. Genome-wide prioritization of disease genes and identification of diseasedisease associations from an integrated human functional linkage network. Genome biology 10, 1 (2009).
-
(2009)
Genome Biology
, vol.10
, pp. 1
-
-
Linghu, B.1
Snitkin, E.S.2
Hu, Z.3
Xia, Y.4
DeLisi, C.5
-
5
-
-
84903751248
-
Inferring novel lncRNA-disease associations based on a random walk model of a lncRNA functional similarity network
-
Sun, J. et al. Inferring novel lncRNA-disease associations based on a random walk model of a lncRNA functional similarity network. Mol Biosyst 10, 2074-2081 (2014).
-
(2014)
Mol Biosyst
, vol.10
, pp. 2074-2081
-
-
Sun, J.1
-
6
-
-
84939498768
-
Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA
-
Chen, X. Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA. Scientific reports 5 (2015).
-
(2015)
Scientific Reports
, vol.5
-
-
Chen, X.1
-
7
-
-
84931281632
-
Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity
-
Chen, X. et al. Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity. Sci Rep 5, 11338 (2015).
-
(2015)
Sci Rep
, vol.5
, pp. 11338
-
-
Chen, X.1
-
8
-
-
84982790528
-
IntNetLncSim: An integrative network analysis method to infer human lncRNA functional similarity
-
Cheng, L. et al. IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity. Oncotarget (2016).
-
(2016)
Oncotarget
-
-
Cheng, L.1
-
9
-
-
77954193356
-
Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases
-
Wang, D., Wang, J., Lu, M., Song, F. & Cui, Q. Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases. Bioinformatics 26, 1644-1650 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 1644-1650
-
-
Wang, D.1
Wang, J.2
Lu, M.3
Song, F.4
Cui, Q.5
-
10
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner, M. et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25, 25-29 (2000).
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
11
-
-
9144252016
-
The gene ontology annotation (goa) database: Sharing knowledge in uniprot with gene ontology
-
Camon, E. et al. The gene ontology annotation (goa) database: sharing knowledge in uniprot with gene ontology. Nucleic acids research 32, D262-D266 (2004).
-
(2004)
Nucleic Acids Research
, vol.32
, pp. D262-D266
-
-
Camon, E.1
-
12
-
-
84859699832
-
Disease Ontology: A backbone for disease semantic integration
-
Schriml, L. M. et al. Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Res 40, D940-D946 (2012).
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D940-D946
-
-
Schriml, L.M.1
-
13
-
-
77953936166
-
The human phenotype ontology
-
Robinson, P. N. & Mundlos, S. The human phenotype ontology. Clin Genet 77, 525-534 (2010).
-
(2010)
Clin Genet
, vol.77
, pp. 525-534
-
-
Robinson, P.N.1
Mundlos, S.2
-
14
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E. S. et al. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001).
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
-
15
-
-
34249088350
-
Genome-wide transcription and the implications for genomic organization
-
Kapranov, P., Willingham, A. T. & Gingeras, T. R. Genome-wide transcription and the implications for genomic organization. Nat Rev Genet 8, 413-423 (2007).
-
(2007)
Nat Rev Genet
, vol.8
, pp. 413-423
-
-
Kapranov, P.1
Willingham, A.T.2
Gingeras, T.R.3
-
16
-
-
84979569793
-
Inferring microRNA-disease associations by random walk on a heterogeneous network with multiple data sources
-
Liu, Y., Zeng, X., He, Z. & Zou, Q. Inferring microRNA-disease associations by random walk on a heterogeneous network with multiple data sources. IEEE/ACM Trans Comput Biol Bioinform (2016).
-
(2016)
IEEE/ACM Trans Comput Biol Bioinform
-
-
Liu, Y.1
Zeng, X.2
He, Z.3
Zou, Q.4
-
17
-
-
84963752293
-
Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks
-
Zeng, X., Zhang, X. & Zou, Q. Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks. Brief Bioinform 17, 193-203 (2016).
-
(2016)
Brief Bioinform
, vol.17
, pp. 193-203
-
-
Zeng, X.1
Zhang, X.2
Zou, Q.3
-
18
-
-
84990061356
-
A network medicine approach to build a comprehensive atlas for the prognosis of human cancer
-
Zhang, F. et al. A network medicine approach to build a comprehensive atlas for the prognosis of human cancer. Brief Bioinform (2016).
-
(2016)
Brief Bioinform
-
-
Zhang, F.1
-
19
-
-
84946905311
-
A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients
-
Sun, J. et al. A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients. Sci Rep 5, 16553 (2015).
-
(2015)
Sci Rep
, vol.5
, pp. 16553
-
-
Sun, J.1
-
20
-
-
84937040431
-
A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer
-
Zhou, M. et al. A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer. J Transl Med 13, 231 (2015).
-
(2015)
J Transl Med
, vol.13
, pp. 231
-
-
Zhou, M.1
-
21
-
-
84941644366
-
Identification and validation of potential prognostic lncRNA biomarkers for predicting survival in patients with multiple myeloma
-
Zhou, M. et al. Identification and validation of potential prognostic lncRNA biomarkers for predicting survival in patients with multiple myeloma. J Exp Clin Cancer Res 34, 102 (2015).
-
(2015)
J Exp Clin Cancer Res
, vol.34
, pp. 102
-
-
Zhou, M.1
-
22
-
-
84973570902
-
Comprehensive analysis of lncRNA expression profiles reveals a novel lncRNA signature to discriminate nonequivalent outcomes in patients with ovarian cancer
-
Zhou, M. et al. Comprehensive analysis of lncRNA expression profiles reveals a novel lncRNA signature to discriminate nonequivalent outcomes in patients with ovarian cancer. Oncotarget (2016).
-
(2016)
Oncotarget
-
-
Zhou, M.1
-
23
-
-
84962809044
-
Characterization of long non-coding RNA-associated ceRNA network to reveal potential prognostic lncRNA biomarkers in human ovarian cancer
-
Zhou, M. et al. Characterization of long non-coding RNA-associated ceRNA network to reveal potential prognostic lncRNA biomarkers in human ovarian cancer. Oncotarget 7, 12598-12611 (2016).
-
(2016)
Oncotarget
, vol.7
, pp. 12598-12611
-
-
Zhou, M.1
-
24
-
-
84969769837
-
Relapse-related long non-coding RNA signature to improve prognosis prediction of lung adenocarcinoma
-
Zhou, M. et al. Relapse-related long non-coding RNA signature to improve prognosis prediction of lung adenocarcinoma. Oncotarget (2016).
-
(2016)
Oncotarget
-
-
Zhou, M.1
-
25
-
-
84907004017
-
Medical subject headings (MeSH) terms
-
Dhammi, I. K. & Kumar, S. Medical subject headings (MeSH) terms. Indian J Orthop 48, 443-444 (2014).
-
(2014)
Indian J Orthop
, vol.48
, pp. 443-444
-
-
Dhammi, I.K.1
Kumar, S.2
-
26
-
-
84891781832
-
HMDD v2.0: A database for experimentally supported human microRNA and disease associations
-
Li, Y. et al. HMDD v2.0: a database for experimentally supported human microRNA and disease associations. Nucleic Acids Res 42, D1070-D1074 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D1070-D1074
-
-
Li, Y.1
-
27
-
-
84876125829
-
LncRNADisease: A database for long-non-coding RNA-associated diseases
-
Chen, G. et al. LncRNADisease: a database for long-non-coding RNA-associated diseases. Nucleic Acids Res 41, D983-D986 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D983-D986
-
-
Chen, G.1
-
28
-
-
58149193222
-
Human protein reference database-2009 update
-
Keshava Prasad, T. S. et al. Human Protein Reference Database-2009 update. Nucleic Acids Res 37, D767-D772 (2009).
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D767-D772
-
-
Keshava Prasad, T.S.1
-
29
-
-
84891818924
-
H. StarBase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
-
Li, J. H., Liu, S., Zhou, H., Qu, L. H. & Yang, J. H. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res 42, D92-D97 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D92-D97
-
-
Li, J.H.1
Liu, S.2
Zhou, H.3
Qu, L.H.4
Yang, J.5
-
30
-
-
34447294237
-
A new method to measure the semantic similarity of GO terms
-
Wang, J. Z., Du, Z., Payattakool, R., Yu, P. S. & Chen, C. F. A new method to measure the semantic similarity of GO terms. Bioinformatics 23, 1274-1281 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 1274-1281
-
-
Wang, J.Z.1
Du, Z.2
Payattakool, R.3
Yu, P.S.4
Chen, C.F.5
-
31
-
-
84964331752
-
Prediction and validation of disease genes using HeteSim scores
-
Zeng, X., Liao, Y., Liu, Y. & Zou, Q. Prediction and validation of disease genes using HeteSim Scores. IEEE/ACM Trans Comput Biol Bioinform (2016).
-
(2016)
IEEE/ACM Trans Comput Biol Bioinform
-
-
Zeng, X.1
Liao, Y.2
Liu, Y.3
Zou, Q.4
-
32
-
-
84962053956
-
Prediction and validation of association between microRNAs and diseases by multipath methods
-
Zeng, X., Zhang, X., Liao, Y. & Pan, L. Prediction and validation of association between microRNAs and diseases by multipath methods. Biochim Biophys Acta (2016).
-
(2016)
Biochim Biophys Acta
-
-
Zeng, X.1
Zhang, X.2
Liao, Y.3
Pan, L.4
-
33
-
-
84959520723
-
Similarity computation strategies in the microRNA-disease network: A survey
-
Zou, Q., Li, J., Song, L., Zeng, X. & Wang, G. Similarity computation strategies in the microRNA-disease network: a survey. Brief Funct Genomics 15, 55-64 (2016).
-
(2016)
Brief Funct Genomics
, vol.15
, pp. 55-64
-
-
Zou, Q.1
Li, J.2
Song, L.3
Zeng, X.4
Wang, G.5
-
34
-
-
84973664378
-
Prediction of MicroRNA-disease associations by matrix completion
-
Zeng, X., Ding, N., Rodríguez-Patón, A. A., Lin, Z. & Ju, Y. Prediction of MicroRNA-disease Associations by Matrix Completion. Current Proteomics 13, 151-157 (2016).
-
(2016)
Current Proteomics
, vol.13
, pp. 151-157
-
-
Zeng, X.1
Ding, N.2
Rodríguez-Patón, A.A.3
Lin, Z.4
Ju, Y.5
-
35
-
-
84984700595
-
InteGO2: A web tool for measuring and visualizing gene semantic similarities using gene ontology
-
Peng, J. et al. InteGO2: a web tool for measuring and visualizing gene semantic similarities using Gene Ontology. BMC Genomics 17 Suppl 5, 530 (2016).
-
(2016)
BMC Genomics
, vol.17
, pp. 530
-
-
Peng, J.1
-
36
-
-
84954358609
-
The Human Phenotype Ontology: A tool for annotating and analyzing human hereditary disease
-
Robinson, P. N. et al. The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. Am J Hum Genet 83, 610-615 (2008).
-
(2008)
Am J Hum Genet
, vol.83
, pp. 610-615
-
-
Robinson, P.N.1
-
37
-
-
84891749517
-
The Human Phenotype Ontology project: Linking molecular biology and disease through phenotype data
-
Kohler, S. et al. The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res 42, D966-D974 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D966-D974
-
-
Kohler, S.1
-
38
-
-
78651317908
-
Entrez Gene: Gene-centered information at NCBI
-
Maglott, D., Ostell, J., Pruitt, K. D. & Tatusova, T. Entrez Gene: gene-centered information at NCBI. Nucleic acids research 39, D52-D57 (2011).
-
(2011)
Nucleic Acids Research
, vol.39
, pp. D52-D57
-
-
Maglott, D.1
Ostell, J.2
Pruitt, K.D.3
Tatusova, T.4
-
39
-
-
84946013175
-
LncRNAdb v2.0: Expanding the reference database for functional long noncoding RNAs
-
Quek, X. C. et al. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. Nucleic Acids Res 43, D168-D173 (2015).
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D168-D173
-
-
Quek, X.C.1
-
40
-
-
77954506225
-
The open biomedical annotator
-
Jonquet, C., Shah, N. H. & Musen, M. A. The open biomedical annotator. Summit on Translat Bioinforma 2009, 56-60 (2009).
-
(2009)
Summit on Translat Bioinforma
, vol.2009
, pp. 56-60
-
-
Jonquet, C.1
Shah, N.H.2
Musen, M.A.3
-
41
-
-
66349110163
-
Annotating the human genome with Disease Ontology
-
Osborne, J. D. et al. Annotating the human genome with Disease Ontology. BMC Genomics 10 Suppl 1, S6 (2009).
-
(2009)
BMC Genomics
, vol.10
, pp. S6
-
-
Osborne, J.D.1
-
42
-
-
84876136826
-
A simulated hybrid cloud for a university environment
-
IEEE
-
Sqalli, M. H., Al-Saeedi, M., Binbeshr, F. & Siddiqui, M. UCloud: A simulated Hybrid Cloud for a university environment. In Cloud Networking (CLOUDNET), 2012 IEEE 1st International Conference on 170-172 (IEEE, 2012).
-
(2012)
Cloud Networking (CLOUDNET), 2012 IEEE 1st International Conference on
, pp. 170-172
-
-
Sqalli, M.H.1
Al-Saeedi, M.2
Binbeshr, F.3
UcLoud, S.M.4
|