메뉴 건너뛰기




Volumn 7, Issue , 2016, Pages

Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments

Author keywords

[No Author keywords available]

Indexed keywords

NITROGEN;

EID: 84989227526     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms12881     Document Type: Article
Times cited : (113)

References (54)
  • 1
    • 60749088668 scopus 로고    scopus 로고
    • Controlling eutrophication: Nitrogen and phosphorus
    • Conley, D. J. et al. Controlling eutrophication: nitrogen and phosphorus. Science 323, 1014-1015 (2009).
    • (2009) Science , vol.323 , pp. 1014-1015
    • Conley, D.J.1
  • 2
    • 84880386652 scopus 로고    scopus 로고
    • Nutrient enrichment, biodiversity loss, and consequent declines in ecosystem productivity
    • Isbell, F. et al. Nutrient enrichment, biodiversity loss, and consequent declines in ecosystem productivity. Proc. Natl Acad. Sci. USA 110, 11911-11916 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 11911-11916
    • Isbell, F.1
  • 3
    • 84941008535 scopus 로고    scopus 로고
    • Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe
    • Leff, J. W. et al. Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe. Proc. Natl Acad. Sci. USA 112, 10967-10972 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 10967-10972
    • Leff, J.W.1
  • 4
    • 84861946973 scopus 로고    scopus 로고
    • A global synthesis reveals biodiversity loss as a major driver of ecosystem change
    • Hooper, D. U. et al. A global synthesis reveals biodiversity loss as a major driver of ecosystem change. Nature 486, 105-108 (2012).
    • (2012) Nature , vol.486 , pp. 105-108
    • Hooper, D.U.1
  • 5
    • 0030863798 scopus 로고    scopus 로고
    • Microbial diversity and ecosystem function
    • Finlay, B. J., Maberly, S. C. & Cooper, J. I. Microbial diversity and ecosystem function. Oikos 80, 209-213 (1997).
    • (1997) Oikos , vol.80 , pp. 209-213
    • Finlay, B.J.1    Maberly, S.C.2    Cooper, J.I.3
  • 7
    • 84981290563 scopus 로고    scopus 로고
    • Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
    • Carini, P. et al. Relic DNA is abundant in soil and obscures estimates of soil microbial diversity. Preprint at bioRxiv 043372 (2016).
    • (2016) Preprint at BioRxiv , pp. 043372
    • Carini, P.1
  • 8
    • 78651511845 scopus 로고    scopus 로고
    • Microbial seed banks: The ecological and evolutionary implications of dormancy
    • Lennon, J. T. & Jones, S. E. Microbial seed banks: the ecological and evolutionary implications of dormancy. Nat. Rev. Microbiol. 9, 119-130 (2011).
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 119-130
    • Lennon, J.T.1    Jones, S.E.2
  • 9
    • 84555208202 scopus 로고    scopus 로고
    • Effects of nitrogen deposition and empirical nitrogen critical loads for ecoregions of the United States
    • Pardo, L. H. M. et al. Effects of nitrogen deposition and empirical nitrogen critical loads for ecoregions of the United States. Ecol. Appl. 21, 3049-3082 (2011).
    • (2011) Ecol. Appl. , vol.21 , pp. 3049-3082
    • Pardo, L.H.M.1
  • 10
    • 84867628505 scopus 로고    scopus 로고
    • Coastal eutrophication as a driver of salt marsh loss
    • Deegan, L. A. et al. Coastal eutrophication as a driver of salt marsh loss. Nature 490, 388-392 (2012).
    • (2012) Nature , vol.490 , pp. 388-392
    • Deegan, L.A.1
  • 11
    • 80052040991 scopus 로고    scopus 로고
    • Microbial community composition in sediments resists perturbation by nutrient enrichment
    • Bowen, J. L. et al. Microbial community composition in sediments resists perturbation by nutrient enrichment. ISME J. 5, 1540-1548 (2011).
    • (2011) ISME J. , vol.5 , pp. 1540-1548
    • Bowen, J.L.1
  • 12
    • 78650432111 scopus 로고    scopus 로고
    • The effect of increased nitrate loading on nitrate reduction via denitrification and DNRA in salt marsh sediments
    • Koop-Jakobsen, K. & Giblin, A. E. The effect of increased nitrate loading on nitrate reduction via denitrification and DNRA in salt marsh sediments. Limnol. Oceanogr. 55, 789-802 (2010).
    • (2010) Limnol. Oceanogr. , vol.55 , pp. 789-802
    • Koop-Jakobsen, K.1    Giblin, A.E.2
  • 13
    • 40049107128 scopus 로고    scopus 로고
    • Susceptibility of salt marshes to nutrient enrichment and predator removal
    • Deegan, L. A. et al. Susceptibility of salt marshes to nutrient enrichment and predator removal. Ecol. Appl. 17, S42-S63 (2007).
    • (2007) Ecol. Appl. , vol.17 , pp. S42-S63
    • Deegan, L.A.1
  • 14
    • 84875368746 scopus 로고    scopus 로고
    • Microbial composition affects the functioning of estuarine sediments
    • Reed, H. E. & Martiny, J. B. Microbial composition affects the functioning of estuarine sediments. ISME J. 7, 868-879 (2013).
    • (2013) ISME J. , vol.7 , pp. 868-879
    • Reed, H.E.1    Martiny, J.B.2
  • 15
    • 84886725824 scopus 로고    scopus 로고
    • Evaluating rRNA as an indicator of microbial activity in environmental communities: Limitations and uses
    • Blazewicz, S. J., Barnard, R. L., Daly, R. A. & Firestone, M. K. Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. ISME J. 7, 2061-2068 (2013).
    • (2013) ISME J. , vol.7 , pp. 2061-2068
    • Blazewicz, S.J.1    Barnard, R.L.2    Daly, R.A.3    Firestone, M.K.4
  • 16
    • 0032855859 scopus 로고    scopus 로고
    • Small ribosomal RNA content in marine Proteobacteria during non-steady state growth
    • Kerkhof, L. & Kemp, P. Small ribosomal RNA content in marine Proteobacteria during non-steady state growth. FEMS Microbiol. Ecol. 30, 253-260 (1999).
    • (1999) FEMS Microbiol. Ecol. , vol.30 , pp. 253-260
    • Kerkhof, L.1    Kemp, P.2
  • 17
    • 84989260776 scopus 로고    scopus 로고
    • Salt marsh plant aboveground responses to simulated coastal eutrophication
    • in the press
    • Johnson, D. S. et al. Salt marsh plant aboveground responses to simulated coastal eutrophication. Ecol. Appl. (in the press).
    • Ecol. Appl.
    • Johnson, D.S.1
  • 18
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson, M. J. A new method for non-parametric multivariate analysis of variance. Austral. Ecol. 26, 32-46 (2001).
    • (2001) Austral. Ecol. , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 19
    • 77950526876 scopus 로고    scopus 로고
    • Dormancy contributes to the maintenance of microbial diversity
    • Jones, S. E. & Lennon, J. T. Dormancy contributes to the maintenance of microbial diversity. Proc. Natl Acad. Sci. USA 107, 5881-5886 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 5881-5886
    • Jones, S.E.1    Lennon, J.T.2
  • 20
    • 84980025206 scopus 로고    scopus 로고
    • Bacterial dormancy is more prevalent in freshwater than hypersaline lakes
    • Aanderud, Z. T. et al. Bacterial dormancy is more prevalent in freshwater than hypersaline lakes. Front. Microbiol. 7, 853 (2016).
    • (2016) Front. Microbiol. , vol.7 , pp. 853
    • Aanderud, Z.T.1
  • 21
    • 65349107674 scopus 로고    scopus 로고
    • Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide
    • Strittmatter, A. W. et al. Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. Environ. Microbiol. 11, 1038-1055 (2009).
    • (2009) Environ. Microbiol. , vol.11 , pp. 1038-1055
    • Strittmatter, A.W.1
  • 22
    • 34247113237 scopus 로고    scopus 로고
    • Genotypic and phenotypic diversity of cyanobacteria assigned to the genus Phormidium (Oscillatoriales) from different habitats and geographical sites
    • Marquardt, J. & Palinska., K. A. Genotypic and phenotypic diversity of cyanobacteria assigned to the genus Phormidium (Oscillatoriales) from different habitats and geographical sites. Arch. Microbiol. 187, 397-413 (2007).
    • (2007) Arch. Microbiol. , vol.187 , pp. 397-413
    • Marquardt, J.1    Palinska, K.A.2
  • 23
    • 0000274290 scopus 로고
    • The nitrogen budget of a salt marsh ecosystem
    • Valiela, I. & Teal, J. M. The nitrogen budget of a salt marsh ecosystem. Nature 280, 652-656 (1979).
    • (1979) Nature , vol.280 , pp. 652-656
    • Valiela, I.1    Teal, J.M.2
  • 24
    • 66149091968 scopus 로고    scopus 로고
    • Increased supply of ambient nitrogen has minimal effect on salt March bacterial production
    • Bowen, J. L., Crump, B. C., Deegan, L. A. & Hobbie, J. E. Increased supply of ambient nitrogen has minimal effect on salt march bacterial production. Limnol. Oceanogr. 54, 713-722 (2009).
    • (2009) Limnol. Oceanogr. , vol.54 , pp. 713-722
    • Bowen, J.L.1    Crump, B.C.2    Deegan, L.A.3    Hobbie, J.E.4
  • 26
    • 84960638901 scopus 로고
    • Nutrients and the productivity of estuarine and coastal marine ecosystems
    • Nixon, S. W., Oviatt, C. A., Frithsen, J. & Sullivan, B. Nutrients and the productivity of estuarine and coastal marine ecosystems. J. Limnol. Soc. S. Afr. 12, 43e71 (1986).
    • (1986) J. Limnol. Soc. S. Afr. , vol.12 , pp. 43e71
    • Nixon, S.W.1    Oviatt, C.A.2    Frithsen, J.3    Sullivan, B.4
  • 27
    • 0036701036 scopus 로고    scopus 로고
    • Harmful algal blooms and eutrophication: Nutrient sources, composition, and consequences
    • Anderson, D. A., Gilbert, P. A. & Burkholder, J. M. Harmful algal blooms and eutrophication: nutrient sources, composition, and consequences. Estuaries 25, 704-726 (2002).
    • (2002) Estuaries , vol.25 , pp. 704-726
    • Anderson, D.A.1    Gilbert, P.A.2    Burkholder, J.M.3
  • 28
    • 84871437699 scopus 로고    scopus 로고
    • Chronic nutrient enrichment increases the density and biomass of the mudsnail Nassarius obsoletus
    • Johnson, D. S. & Short, M. I. Chronic nutrient enrichment increases the density and biomass of the mudsnail Nassarius obsoletus. Estuar. Coasts 36, 28-35 (2013).
    • (2013) Estuar. Coasts , vol.36 , pp. 28-35
    • Johnson, D.S.1    Short, M.I.2
  • 29
    • 78649732106 scopus 로고    scopus 로고
    • The taxonomic and functional diversity of microbes at a temperate coastal site: A multi-omic study of seasonal and diel temporal variation
    • Gilbert, J. A. et al. The taxonomic and functional diversity of microbes at a temperate coastal site: a multi-omic study of seasonal and diel temporal variation. PloS ONE 5, e15545 (2010).
    • (2010) PloS ONE , vol.5 , pp. e15545
    • Gilbert, J.A.1
  • 30
    • 78049286743 scopus 로고    scopus 로고
    • Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
    • McCarren, J. et al. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proc. Natl Acad. Sci. USA 107, 16420-16427 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 16420-16427
    • McCarren, J.1
  • 31
    • 33845516878 scopus 로고    scopus 로고
    • Response of microbial community composition and function to soil climate change
    • Waldrop, M. P. & Firestone, M. K. Response of microbial community composition and function to soil climate change. Microbiol. Ecol. 52, 716-724 (2006).
    • (2006) Microbiol. Ecol. , vol.52 , pp. 716-724
    • Waldrop, M.P.1    Firestone, M.K.2
  • 32
    • 44249109495 scopus 로고    scopus 로고
    • Transformation of the nitrogen cycle: Recent trends, questions, and potential solutions
    • Galloway, J. N. et al. Transformation of the nitrogen cycle: recent trends, questions, and potential solutions. Science 320, 889-892 (2008).
    • (2008) Science , vol.320 , pp. 889-892
    • Galloway, J.N.1
  • 34
    • 79952005915 scopus 로고    scopus 로고
    • Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
    • Caporaso, J. G. et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc. Natl Acad. Sci. USA 108, 4516-4522 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 4516-4522
    • Caporaso, J.G.1
  • 35
    • 81855170246 scopus 로고    scopus 로고
    • Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton
    • Ottesen, E. A. et al. Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. ISME J. 5, 1881-1895 (2011).
    • (2011) ISME J. , vol.5 , pp. 1881-1895
    • Ottesen, E.A.1
  • 37
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 38
    • 84871979584 scopus 로고    scopus 로고
    • Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
    • Bokulich, N. A. et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat. Methods 10, 57-59 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 57-59
    • Bokulich, N.A.1
  • 40
    • 84907710189 scopus 로고    scopus 로고
    • Swarm: Robust and fast clustering method for amplicon-based studies
    • Mahe, F., Rognes, T., Quince, C., de Vargas, C. & Dunthorn, M. Swarm: robust and fast clustering method for amplicon-based studies. PeerJ 2, e593 (2014).
    • (2014) PeerJ , vol.2 , pp. e593
    • Mahe, F.1    Rognes, T.2    Quince, C.3    De Vargas, C.4    Dunthorn, M.5
  • 41
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: A flexible tool for aligning sequences to a template alignment
    • Caporaso, J. G. et al. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26, 266-267 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 266-267
    • Caporaso, J.G.1
  • 42
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2-approximately maximumlikelihood trees for large alignments
    • Price, M. N., Dehal, P. S. & Arkin, A. P. FastTree 2-approximately maximumlikelihood trees for large alignments. PloS ONE 5, e9490 (2010).
    • (2010) PloS ONE , vol.5 , pp. e9490
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 43
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone, C. A. & Knight, R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235 (2005).
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.A.1    Knight, R.2
  • 45
    • 0027100003 scopus 로고
    • Oxygen solubility in seawater: Better fitting equations
    • Garcia, H. E. & Gordon, L. I. Oxygen solubility in seawater: better fitting equations. Limnol. Oceanogr. 37, 1307-1312 (1992).
    • (1992) Limnol. Oceanogr. , vol.37 , pp. 1307-1312
    • Garcia, H.E.1    Gordon, L.I.2
  • 46
    • 84865574458 scopus 로고    scopus 로고
    • Tidal and groundwater fluxes to a shallow, microtidal estuary: Constraining inputs through field observations and hydrodynamic modeling
    • Ganju, N. K. et al. Tidal and groundwater fluxes to a shallow, microtidal estuary: constraining inputs through field observations and hydrodynamic modeling. Estuar. Coasts 35, 1285-1298 (2012).
    • (2012) Estuar. Coasts , vol.35 , pp. 1285-1298
    • Ganju, N.K.1
  • 47
    • 0002540562 scopus 로고
    • Salt marsh hydrology: Implications for biogeochemical fluxes to the atmosphere and estuaries
    • Nuttle, W. K. & Hemond, H. F. Salt marsh hydrology: implications for biogeochemical fluxes to the atmosphere and estuaries. Glob. Biogeochem. Cycles 2, 91-114 (1988).
    • (1988) Glob. Biogeochem. Cycles , vol.2 , pp. 91-114
    • Nuttle, W.K.1    Hemond, H.F.2
  • 48
    • 45049084802 scopus 로고    scopus 로고
    • A method for estimating pore water drainage from marsh soils using rainfall and well records
    • Gardner, L. R. & Gaines, E. F. A method for estimating pore water drainage from marsh soils using rainfall and well records. Estuar. Coast. Shelf Sci. 79, 51-58 (2008).
    • (2008) Estuar. Coast. Shelf Sci. , vol.79 , pp. 51-58
    • Gardner, L.R.1    Gaines, E.F.2
  • 49
    • 84898056507 scopus 로고    scopus 로고
    • Fortnightly tidal modulations affect net community production in a mesotidal estuary
    • Nidzieko, N. J., Needoba, J. A., Monismith, S. G. & Johnson, K. S. Fortnightly tidal modulations affect net community production in a mesotidal estuary. Estuar. Coasts 37, S91-S110 (2014).
    • (2014) Estuar. Coasts , vol.37 , pp. S91-S110
    • Nidzieko, N.J.1    Needoba, J.A.2    Monismith, S.G.3    Johnson, K.S.4
  • 50
    • 0002092387 scopus 로고
    • The ecological significance of sulfur in the energy dynamics of salt marsh and coastal marine sediments
    • Howarth, R. W. The ecological significance of sulfur in the energy dynamics of salt marsh and coastal marine sediments. Biogeochemistry 1, 5-27 (1984).
    • (1984) Biogeochemistry , vol.1 , pp. 5-27
    • Howarth, R.W.1
  • 51
    • 84924812246 scopus 로고    scopus 로고
    • Cable bacteria associated with longdistance electron transport in New England salt marsh sediment
    • Larsen, S., Nielsen, L. P. & Schramm, A. Cable bacteria associated with longdistance electron transport in New England salt marsh sediment. Environ. Microbiol. Rep. 7, 175-179 (2015).
    • (2015) Environ. Microbiol. Rep. , vol.7 , pp. 175-179
    • Larsen, S.1    Nielsen, L.P.2    Schramm, A.3
  • 52
    • 4344672940 scopus 로고    scopus 로고
    • Variability of the gas transfer velocity of CO2 in a macrotidal estuary (the Scheldt)
    • Borges, A. V. et al. Variability of the gas transfer velocity of CO2 in a macrotidal estuary (the Scheldt). Estuaries 27, 593-603 (2004).
    • (2004) Estuaries , vol.27 , pp. 593-603
    • Borges, A.V.1
  • 53
    • 33646336887 scopus 로고    scopus 로고
    • Constraining bubble dynamics and mixing with dissolved gases: Implications for productivity measurements by oxygen mass balance
    • Hamme, R. C. & Emerson, S. R. Constraining bubble dynamics and mixing with dissolved gases: implications for productivity measurements by oxygen mass balance. J. Mar. Res. 64, 73-95 (2006).
    • (2006) J. Mar. Res. , vol.64 , pp. 73-95
    • Hamme, R.C.1    Emerson, S.R.2
  • 54
    • 0000487506 scopus 로고
    • Gas advection in sediments of a South Carolina salt marsh
    • Morris, J. T. & Whiting, G. J. Gas advection in sediments of a South Carolina salt marsh. Mar. Ecol. Prog. Ser. 27, 187-194 (1985).
    • (1985) Mar. Ecol. Prog. Ser. , vol.27 , pp. 187-194
    • Morris, J.T.1    Whiting, G.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.