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Volumn 76, Issue 17, 2010, Pages 5995-6000

Extraction of mRNA from soil

Author keywords

[No Author keywords available]

Indexed keywords

EFFICIENT METHOD; EXONUCLEASE; EXTRACTION METHOD; HIGH QUALITY; HUMIC ACID; Q-SEPHAROSE; REMOVAL EFFICIENCIES; SUBTRACTIVE HYBRIDIZATION;

EID: 77956603781     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.03047-09     Document Type: Article
Times cited : (92)

References (34)
  • 2
    • 33645241609 scopus 로고    scopus 로고
    • Bayesian detection of periodic mRNA time profiles without use of training examples
    • Andersson, C. R., A. Isaksson, and M. G. Gustafsson. 2006. Bayesian detection of periodic mRNA time profiles without use of training examples. BMC Bioinformatics 7:63.
    • (2006) BMC Bioinformatics , vol.7 , pp. 63
    • Andersson, C.R.1    Isaksson, A.2    Gustafsson, M.G.3
  • 3
    • 0242668357 scopus 로고    scopus 로고
    • MRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil
    • Burgmann, H., F. Widmer, W. V. Sigler, and J. Zeyer. 2003. mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil. Appl. Environ. Microbiol. 69:1928-1935.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1928-1935
    • Burgmann, H.1    Widmer, F.2    Sigler, W.V.3    Zeyer, J.4
  • 4
    • 34250875706 scopus 로고    scopus 로고
    • Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal
    • Celesnik, H., A. Deana, and J. G. Belasco. 2007. Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal. Mol. Cell 27:79-90.
    • (2007) Mol. Cell. , vol.27 , pp. 79-90
    • Celesnik, H.1    Deana, A.2    Belasco, J.G.3
  • 5
    • 34848889783 scopus 로고    scopus 로고
    • Identification of active methanotrophs in a landfill cover soil through detection of expression of 16S rRNA and functional genes
    • Chen, Y., M. G. Dumont, A. Cébron, and J. C. Murrell. 2007. Identification of active methanotrophs in a landfill cover soil through detection of expression of 16S rRNA and functional genes. Environ. Microbiol. 9:2855-2869.
    • (2007) Environ. Microbiol. , vol.9 , pp. 2855-2869
    • Chen, Y.1    Dumont, M.G.2    Cébron, A.3    Murrell, J.C.4
  • 6
    • 0032145986 scopus 로고    scopus 로고
    • Simple and rapid method for direct extraction of microbial DNA from soil for PCR
    • Cullen, D. W., and P. R. Hirsch. 1998. Simple and rapid method for direct extraction of microbial DNA from soil for PCR. Soil Biol. Biochem. 30:983-993.
    • (1998) Soil Biol. Biochem. , vol.30 , pp. 983-993
    • Cullen, D.W.1    Hirsch, P.R.2
  • 7
    • 33745132352 scopus 로고    scopus 로고
    • Removal of humic substances from soil DNA using aluminium sulfate
    • Dong, D., A. Yan, H. Liu, X. Zhang, and Y. Xu. 2006. Removal of humic substances from soil DNA using aluminium sulfate. J. Microbiol. Methods 66:217-222.
    • (2006) J. Microbiol. Methods , vol.66 , pp. 217-222
    • Dong, D.1    Yan, A.2    Liu, H.3    Zhang, X.4    Xu, Y.5
  • 8
    • 3042513408 scopus 로고    scopus 로고
    • Comparative analysis of genetic diversity and expression of amoA in wastewater treatment processes
    • DOI 10.1007/s00253-004-1558-x
    • Ebie, Y., N. Noda, H. Miura, M. Matsumura, S. Tsuneda, A. Hirata, and Y. Inamori. 2004. Comparative analysis of genetic diversity and expression of amoA in wastewater treatment processes. Appl. Microbiol. Biotechnol. 64:740-744. (Pubitemid 38822640)
    • (2004) Applied Microbiology and Biotechnology , vol.64 , Issue.5 , pp. 740-744
    • Ebie, Y.1    Noda, N.2    Miura, H.3    Matsumura, M.4    Tsuneda, S.5    Hirata, A.6    Inamori, Y.7
  • 10
    • 52449114817 scopus 로고    scopus 로고
    • Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities
    • Gilbert, J. A., D. Field, Y. Huang, R. Edwards, W. Li, P. Gilna, and I. Joint. 2008. Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One 3: e3042.
    • (2008) PLoS One , vol.3
    • Gilbert, J.A.1    Field, D.2    Huang, Y.3    Edwards, R.4    Li, W.5    Gilna, P.6    Joint, I.7
  • 11
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA and rRNA-based microbial community composition
    • Griffiths, R. I., A. S. Whiteley, A. G. O'Donnell, and M. J. Bailey. 2001. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA and rRNA-based microbial community composition. Appl. Microbiol. Biotechnol. 66:5488-5491.
    • (2001) Appl. Microbiol. Biotechnol. , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 12
    • 0342804286 scopus 로고    scopus 로고
    • Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane
    • Henckel, T., U. Jackel, S. Schnell, and R. Conrad. 2000. Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane. Appl. Environ. Microbiol. 66:1801-1808.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1801-1808
    • Henckel, T.1    Jackel, U.2    Schnell, S.3    Conrad, R.4
  • 14
    • 3042645502 scopus 로고    scopus 로고
    • Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA
    • Jiang, X., and J. G. Belasco. 2004. Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA. Proc. Natl. Acad. Sci. U. S. A. 101:9211-9216.
    • (2004) Proc. Natl. Acad. Sci. U. S. A , vol.101 , pp. 9211-9216
    • Jiang, X.1    Belasco, J.G.2
  • 15
    • 0026788191 scopus 로고
    • Solubility and fractionation of humic acid; effect of pH and ionic medium
    • Kipton, H., J. Powell, and R. M. Town. 1992. Solubility and fractionation of humic acid; effect of pH and ionic medium. Anal. Chim. Acta 267:47-54.
    • (1992) Anal. Chim. Acta , vol.267 , pp. 47-54
    • Kipton, H.1    Powell, J.2    Town, R.M.3
  • 16
    • 27444441768 scopus 로고    scopus 로고
    • Influence of different Oryza cultivars on expression of nifH gene pools in roots of rice
    • Knauth, S., T. Hurek, D. Brar, and B. Reinhold-Hurek. 2005. Influence of different Oryza cultivars on expression of nifH gene pools in roots of rice. Environ. Microbiol. 7:1725-1733.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1725-1733
    • Knauth, S.1    Hurek, T.2    Brar, D.3    Reinhold-Hurek, B.4
  • 17
    • 22744440684 scopus 로고    scopus 로고
    • Abundance and activity of uncultured methanotrophic bacteria involved in consumption of atmospheric methane in two forest soils
    • Kolb, S., C. Knief, P. F. Dunfield, and R. Conrad. 2005. Abundance and activity of uncultured methanotrophic bacteria involved in consumption of atmospheric methane in two forest soils. Environ. Microbiol. 7:1150-1162.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1150-1162
    • Kolb, S.1    Knief, C.2    Dunfield, P.F.3    Conrad, R.4
  • 18
    • 0003606948 scopus 로고
    • 2nd ed., Pergamon Press, Oxford, United Kingdom
    • Kononova, M. M. 1966. Soil organic matter, 2nd ed., p. 400-404. Pergamon Press, Oxford, United Kingdom.
    • (1966) Soil Organic Matter. , pp. 400-404
    • Kononova, M.M.1
  • 19
    • 33745803829 scopus 로고    scopus 로고
    • Structure and activity of bacterial community inhabiting rice roots and the rhizosphere
    • Lu, Y., D. Rosencrantz, W. Liesack, and R. Conrad. 2006. Structure and activity of bacterial community inhabiting rice roots and the rhizosphere. Environ. Microbiol. 8:1351-1360.
    • (2006) Environ. Microbiol. , vol.8 , pp. 1351-1360
    • Lu, Y.1    Rosencrantz, D.2    Liesack, W.3    Conrad, R.4
  • 20
    • 0035129246 scopus 로고    scopus 로고
    • Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments
    • Miller, D. N. 2001. Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments. J. Microbiol. Methods 44:49-58.
    • (2001) J. Microbiol. Methods , vol.44 , pp. 49-58
    • Miller, D.N.1
  • 21
    • 0028889352 scopus 로고
    • Effect of pH on RNA degradation during guanidinium extraction
    • Noonberg, S. B., G. K. Scott, and C. C. Benz. 1995. Effect of pH on RNA degradation during guanidinium extraction. Biotechniques 19:731-733.
    • (1995) Biotechniques , vol.19 , pp. 731-733
    • Noonberg, S.B.1    Scott, G.K.2    Benz, C.C.3
  • 22
    • 77956584827 scopus 로고    scopus 로고
    • Ph. D. thesis. Technische Universität Bergakademie, Freiberg, Germany
    • Popp, N. 2006. Ph. D. thesis. Technische Universität Bergakademie, Freiberg, Germany.
    • (2006)
    • Popp, N.1
  • 23
    • 66649089244 scopus 로고    scopus 로고
    • Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
    • Poretsky, R. S., I. Hewson, S. Sun, A. E. Allen, J. P. Zehr, and M. A. Moran. 2009. Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ. Microbiol. 11:1358-1375.
    • (2009) Environ. Microbiol. , vol.11 , pp. 1358-1375
    • Poretsky, R.S.1    Hewson, I.2    Sun, S.3    Allen, A.E.4    Zehr, J.P.5    Moran, M.A.6
  • 24
    • 34848861111 scopus 로고    scopus 로고
    • An improved method for single step purification of metagenomic DNA
    • Sharma, P. K., N. Capalash, and J. Kaur. 2007. An improved method for single step purification of metagenomic DNA. Mol. Biotechnol. 36:61-63.
    • (2007) Mol. Biotechnol. , vol.36 , pp. 61-63
    • Sharma, P.K.1    Capalash, N.2    Kaur, J.3
  • 25
    • 17444413782 scopus 로고    scopus 로고
    • Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes
    • Sharma, S., M. K. Aneja, J. Mayer, J. C. Munch, and M. Schloter. 2005. Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes. Appl. Environ. Microbiol. 71:2001-2007.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 2001-2007
    • Sharma, S.1    Aneja, M.K.2    Mayer, J.3    Munch, J.C.4    Schloter, M.5
  • 26
    • 63849343340 scopus 로고    scopus 로고
    • Transcriptional activity of paddy soil bacterial communities
    • Shrestha, P. M., M. Kube, R. Reinhardt, and W. Liesack. 2009. Transcriptional activity of paddy soil bacterial communities. Environ. Microbiol. 11:960-970.
    • (2009) Environ. Microbiol. , vol.11 , pp. 960-970
    • Shrestha, P.M.1    Kube, M.2    Reinhardt, R.3    Liesack, W.4
  • 28
    • 77954086440 scopus 로고    scopus 로고
    • Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics
    • doi:10.1038/ismej.2010.18
    • Stewart, F. J., E. A. Ottesen, and E. F. De Long. 2010. Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics. ISME J. 4:896-907. doi:10.1038/ismej.2010.18.
    • (2010) ISME J. , vol.4 , pp. 896-907
    • Stewart, F.J.1    Ottesen, E.A.2    De Long, E.F.3
  • 29
    • 0000558204 scopus 로고    scopus 로고
    • Organic matter characterization
    • D. L. Sparks, A. L. Page, P. A. Helmke, R. H. Loeppert, P. N. Soltanpour, M. A. Tabatabai, C. T. Johnston, and M. E. Sumner ed., Soil Science Society of America, Madison, WI
    • Swift, R. S. 1996. Organic matter characterization, p. 1018-1020. In D. L. Sparks, A. L. Page, P. A. Helmke, R. H. Loeppert, P. N. Soltanpour, M. A. Tabatabai, C. T. Johnston, and M. E. Sumner (ed.), Methods of soil analysis. Part 3. Chemical methods. Soil Science Society of America, Madison, WI.
    • (1996) Methods of Soil Analysis. Part 3. Chemical Methods , pp. 1018-1020
    • Swift, R.S.1
  • 30
    • 0026708461 scopus 로고
    • Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction
    • Tsai, Y., and B. H. Olson. 1992. Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl. Environ. Microbiol. 58:2292-2295.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2292-2295
    • Tsai, Y.1    Olson, A.B.H.2
  • 31
    • 49649087440 scopus 로고    scopus 로고
    • Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome
    • Urich, T., A. Lanzén, J. Qi, D. H. Huson, C. Schleper, and S. C. Schuster. 2008. Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PLoS One 3: e2527.
    • (2008) PLoS One , vol.3
    • Urich, T.1    Lanzén, A.2    Qi, J.3    Huson, D.H.4    Schleper, C.5    Schuster, S.C.6
  • 33
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D. M., R. Weller, and M. M. Bateson. 1990. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345:63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 34
    • 33746597799 scopus 로고    scopus 로고
    • Humic acids-are they natural products?
    • Zuman, P., and E. B. Rupp. 2006. Humic acids-are they natural products? Croat. Chem. Acta 79:57-65.
    • (2006) Croat. Chem. Acta , vol.79 , pp. 57-65
    • Zuman, P.1    Rupp, A.E.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.