Genomic plasticity of multidrug-resistant NDM-1 positive clinical isolate of providencia rettgeri

Genome Biology and Evolution

Volumn 8, Issue 3, 2016, Pages 723-728

  Olumuyiwa Olaitan, Abiola ^a   Diene, Seydina M ^a   Victor Assous, Marc ^b   Rolain, Jean Marc ^a  

^a AIX MARSEILLE UNIVERSITY   (France)

^b SHAARE ZEDEK MEDICAL CENTER   (Israel)

Author keywords

Antibiotic resistance; Carbapenem biosynthesis; Comparative genomics; Pathogenicity; Virulence

Indexed keywords

ANTIINFECTIVE AGENT; BETA LACTAMASE; BETA-LACTAMASE NDM-1;

BACTERIAL GENOME; DNA SEQUENCE; ENTEROBACTERIACEAE INFECTION; GENETICS; HORIZONTAL GENE TRANSFER; HUMAN; MICROBIOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MULTIDRUG RESISTANCE; PATHOGENICITY; PHYLOGENY; PROVIDENCIA;

ANTI-BACTERIAL AGENTS; BETA-LACTAMASES; DRUG RESISTANCE, MULTIPLE; ENTEROBACTERIACEAE INFECTIONS; EVOLUTION, MOLECULAR; GENE TRANSFER, HORIZONTAL; GENOME, BACTERIAL; HUMANS; MOLECULAR SEQUENCE ANNOTATION; PHYLOGENY; PROVIDENCIA; SEQUENCE ANALYSIS, DNA;

EID: 84985931052     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evv195     Document Type: Article

References (17)

1. Burrus V, Waldor MK. 2004. Shaping bacterial genomes with integrative and conjugative elements. Res Microbiol. 155:376-386.
2. Derzelle S, Duchaud E, Kunst F, Danchin A, Bertin P. 2002. Identification, characterization, and regulation of a cluster of genes involved in carbapenem biosynthesis in Photorhabdus luminescens. Appl Environ Microbiol. 68:3780-3789.
3. Diene SM, et al. 2013. The rhizome of the multidrug-resistant Enterobacter aerogenes genome reveals how new "killer bugs" are created because of a sympatric lifestyle. Mol Biol Evol. 30:369-383.
4. Gefen-Halevi S, et al. 2013. Isolation of genetically unrelated bla(NDM-1)-positive Providencia rettgeri strains in Israel. J Clin Microbiol. 51:1642-1643.
5. Georgiades K, Raoult D. 2011. Genomes of the most dangerous epidemic bacteria have a virulence repertoire characterized by fewer genes but more toxin-antitoxin modules. PLoS One 6:e17962.
6. Guillard T, et al. 2014. Mobile insertion cassette elements found in small non-transmissible plasmids in Proteeae may explain qnrD mobilization. PLoS One 9:e87801.
7. Gupta SK, et al. 2014. ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes. Antimicrob Agents Chemother. 58:212-220.
8. Jackson RW, Vinatzer B, Arnold DL, Dorus S, Murillo J. 2011. The influence of the accessory genome on bacterial pathogen evolution. Mob Genet Elements. 1:55-65.
9. Lachish T, et al. 2012. Emergence of New Delhi metallo-beta-lactamase in Jerusalem, Israel. Int J Antimicrob Agents. 40:566-567.
10. McGowan SJ, et al. 1996. Analysis of bacterial carbapenem antibiotic production genes reveals a novel beta-lactam biosynthesis pathway. Mol Microbiol. 22:415-426.
11. Moran NA, Plague GR. 2004. Genomic changes following host restriction in bacteria. Curr Opin Genet Dev. 14:627-633.
12. Olaitan AO, et al. 2014. Genome analysis of NDM-1 producing Morganella morganii clinical isolate. Expert Rev Anti Infect Ther. 12:1297-1305.
13. Parker WL, et al. 1982. SQ 27,860, a simple carbapenem produced by species of Serratia and Erwinia. J Antibiot (Tokyo). 35:653-660.
14. Poirel L, Dortet L, Bernabeu S, Nordmann P. 2011. Genetic features of blaNDM-1-positive Enterobacteriaceae. Antimicrob Agents Chemother. 55:5403-5407.
15. Rodríguez-Blanco A, Lemos ML, Osorio CR. 2012. Integrating conjugative elements as vectors of antibiotic, mercury, and quaternary ammonium compound resistance in marine aquaculture environments. Antimicrob Agents Chemother. 56:2619-2626.
16. Tada T, et al. 2014. NDM-1 metallo-b-lactamase and ArmA 16S rRNA methylase producing Providencia rettgeri clinical isolates in Nepal. BMC Infect Dis. 14:56.
17. Wen Y, Behiels E, Devreese B. 2014. Toxin-antitoxin systems: their role in persistence, biofilm formation, and pathogenicity. Pathog Dis. 70:240-249.