Sequence Ontology annotation guide

Comparative and Functional Genomics

Volumn 5, Issue 8, 2004, Pages 642-647

  Eilbeck, Karen ^a   Lewis, Suzanna E ^a  

^a University of California Berkeley   (United States)

Author keywords

Annotation; Genomics; Ontology

Indexed keywords

MESSENGER RNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; BIOINFORMATICS; CODING; COMPUTER PROGRAM; CONFERENCE PAPER; DNA DATA BANK OF JAPAN; EMBL NUCLEOTIDE SEQUENCE DATABASE; EXON; GENBANK; GENE LOCATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC TRANSCRIPTION; HUMAN; INTERNET; INTRON; MEDICAL INFORMATION SYSTEM; NONHUMAN; ONTOGENY; PRIORITY JOURNAL; RNA SPLICING; SEQUENCE ANALYSIS; STANDARD; VALIDATION PROCESS;

EID: 15544380498     PISSN: 15316912     EISSN: None     Source Type: Journal    
DOI: 10.1002/cfg.446     Document Type: Conference Paper

References (14)

1. Benson DA, Karsch-Mizrachi I, Lipman DJ, J, Wheeler DL. 2003. GenBank. Nucleic Acids Res 31: 23-27.
2. BSML documentation; www.bsml.org.
3. DDBJ/EMBL/GenBank Feature Table; www.ncbi.nlm.nih.gov/collab/FT/index.html.
4. GAME XML documentation; www.fruitfly.org/annot/gamexml.dtd.txt.
5. Generic Model Organism Database (GMOD) homepage; www.gmod.org.
6. GFF2 documentation; www.sanger.ac.uk/Software/formats/GFF/GFF_Spec.shtml.
7. GFF3 documentation; song.sourceforge.net/gff3.shtml.
8. Kulikova T, Aldebert P, Althorpe A, et al. 2004. The EMBL Nucleotide Sequence Database. Nucleic Acids Res 32: 27-30.
9. Lewis SE, Searle SMJ, Harris N, et al. 2002. Apollo: a sequence annotation editor. Genome Biology 3: research0082.
10. Miyazaki S, Sugawara H, Ikeo K, Gojobori T, Tateno Y. 2004. DDBJ in the stream of various biological data. Nucleic Acids Res 32: 31-34.
11. Open Biological Ontologies (OBO); obo.sourceforge.net.
12. Rutherford K, Parkhill J, Crook J, et al. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
13. Sequence Ontology homepage: song.sourceforge.net.
14. Stein LD, Mungall C, Shu S, et al. 2002. The generic genome browser: a building block for a model organism system database. Genome Res 12: 1599-1610.