메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Gut microbiome and dietary patterns in different Saudi populations and monkeys

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RIBOSOME DNA; RNA 16S;

EID: 84984991188     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep32191     Document Type: Article
Times cited : (61)

References (38)
  • 1
    • 84883864245 scopus 로고    scopus 로고
    • Meta-analyses of studies of the human microbiota
    • Lozupone, C. A. et al. Meta-analyses of studies of the human microbiota. Genome Res. 23, 1704-1714 (2013).
    • (2013) Genome Res. , vol.23 , pp. 1704-1714
    • Lozupone, C.A.1
  • 2
    • 84970046149 scopus 로고    scopus 로고
    • Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies
    • Angelakis, E. et al. Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies. Sci. Rep. 6, 26276 (2016).
    • (2016) Sci. Rep. , vol.6 , pp. 26276
    • Angelakis, E.1
  • 3
    • 85027927719 scopus 로고    scopus 로고
    • Enterotypes of the human gut microbiome
    • Arumugam, M. et al. Enterotypes of the human gut microbiome. Nature 473, 174-180 (2011).
    • (2011) Nature , vol.473 , pp. 174-180
    • Arumugam, M.1
  • 4
    • 84870805463 scopus 로고    scopus 로고
    • Chimpanzees and humans harbour compositionally similar gut enterotypes
    • Moeller, A. H. et al. Chimpanzees and humans harbour compositionally similar gut enterotypes. Nat. Commun. 3, 1179 (2012).
    • (2012) Nat. Commun. , vol.3 , pp. 1179
    • Moeller, A.H.1
  • 5
    • 77957075815 scopus 로고    scopus 로고
    • Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
    • De Filippo, C. et al. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. USA 107, 14691-14696 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 14691-14696
    • De Filippo, C.1
  • 6
    • 84923080032 scopus 로고    scopus 로고
    • Gut microbiome of the Hadza hunter-gatherers
    • Schnorr, S. L. et al. Gut microbiome of the Hadza hunter-gatherers. Nat. Commun. 5, 3654 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 3654
    • Schnorr, S.L.1
  • 7
    • 84925708427 scopus 로고    scopus 로고
    • Subsistence strategies in traditional societies distinguish gut microbiomes
    • Obregon-Tito, A. J. et al. Subsistence strategies in traditional societies distinguish gut microbiomes. Nat. Commun. 6, 6505 (2015).
    • (2015) Nat. Commun. , vol.6 , pp. 6505
    • Obregon-Tito, A.J.1
  • 8
    • 84862141704 scopus 로고    scopus 로고
    • Human gut microbiome viewed across age and geography
    • Yatsunenko, T. et al. Human gut microbiome viewed across age and geography. Nature 486, 222-227 (2012).
    • (2012) Nature , vol.486 , pp. 222-227
    • Yatsunenko, T.1
  • 9
    • 84924187224 scopus 로고    scopus 로고
    • The gut microbiota of Colombians differs from that of Americans, Europeans and Asians
    • Escobar, J. S., Klotz, B., Valdes, B. E. & Agudelo, G. M. The gut microbiota of Colombians differs from that of Americans, Europeans and Asians. BMC. Microbiol 14, 311 (2014).
    • (2014) BMC. Microbiol , vol.14 , pp. 311
    • Escobar, J.S.1    Klotz, B.2    Valdes, B.E.3    Agudelo, G.M.4
  • 10
    • 77951622993 scopus 로고    scopus 로고
    • Infection, inflammation, and chronic diseases: Consequences of a modern lifestyle
    • Ehlers, S. & Kaufmann, S. H. Infection, inflammation, and chronic diseases: consequences of a modern lifestyle. Trends Immunol. 31, 184-190 (2010).
    • (2010) Trends Immunol. , vol.31 , pp. 184-190
    • Ehlers, S.1    Kaufmann, S.H.2
  • 11
    • 46249085739 scopus 로고    scopus 로고
    • Evolution of mammals and their gut microbes
    • Ley, R. E. et al. Evolution of mammals and their gut microbes. Science 320, 1647-1651 (2008).
    • (2008) Science , vol.320 , pp. 1647-1651
    • Ley, R.E.1
  • 12
    • 84944755228 scopus 로고    scopus 로고
    • A metagenomic investigation of the duodenal microbiota reveals links with obesity
    • Angelakis, E. et al. A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity. PLoS. One. 10, e0137784 (2015).
    • (2015) PLoS. One. , vol.10 , pp. e0137784
    • Angelakis, E.1
  • 13
    • 77956864975 scopus 로고    scopus 로고
    • Poor diet quality and food habits are related to impaired nutritional status in 13- to 18-year-old adolescents in Jeddah
    • Washi, S. A. & Ageib, M. B. Poor diet quality and food habits are related to impaired nutritional status in 13- to 18-year-old adolescents in Jeddah. Nutr. Res. 30, 527-534 (2010).
    • (2010) Nutr. Res. , vol.30 , pp. 527-534
    • Washi, S.A.1    Ageib, M.B.2
  • 14
    • 84929074103 scopus 로고    scopus 로고
    • Comparison of the gut microbiota of people in France and Saudi Arabia
    • Yasir, M. et al. Comparison of the gut microbiota of people in France and Saudi Arabia. Nutr. Diabetes 5, e153 (2015).
    • (2015) Nutr. Diabetes , vol.5 , pp. e153
    • Yasir, M.1
  • 15
    • 84919473614 scopus 로고    scopus 로고
    • Rapid changes in the gut microbiome during human evolution
    • Moeller, A. H. et al. Rapid changes in the gut microbiome during human evolution. Proc. Natl. Acad. Sci. USA 111, 16431-16435 (2014).
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. 16431-16435
    • Moeller, A.H.1
  • 16
    • 84881484788 scopus 로고    scopus 로고
    • Cohabiting family members share microbiota with one another and with their dogs
    • Song, S. J. et al. Cohabiting family members share microbiota with one another and with their dogs. Elife. 2, e00458 (2013).
    • (2013) Elife. , vol.2 , pp. e00458
    • Song, S.J.1
  • 17
    • 84885060317 scopus 로고    scopus 로고
    • Sympatric chimpanzees and gorillas harbor convergent gut microbial communities
    • Moeller, A. H. et al. Sympatric chimpanzees and gorillas harbor convergent gut microbial communities. Genome Res. 23, 1715-1720 (2013).
    • (2013) Genome Res. , vol.23 , pp. 1715-1720
    • Moeller, A.H.1
  • 18
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • Wu, G. D. et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 334, 105-108 (2011).
    • (2011) Science , vol.334 , pp. 105-108
    • Wu, G.D.1
  • 19
    • 84555197106 scopus 로고    scopus 로고
    • The relationship between gut microbiota and weight gain in humans
    • Angelakis, E., Armougom, F., Million, M. & Raoult, D. The relationship between gut microbiota and weight gain in humans. Future. Microbiol 7, 91-109 (2012).
    • (2012) Future. Microbiol , vol.7 , pp. 91-109
    • Angelakis, E.1    Armougom, F.2    Million, M.3    Raoult, D.4
  • 20
    • 84892828465 scopus 로고    scopus 로고
    • Diet rapidly and reproducibly alters the human gut microbiome
    • David, L. A. et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563 (2014).
    • (2014) Nature , vol.505 , pp. 559-563
    • David, L.A.1
  • 21
    • 84883057637 scopus 로고    scopus 로고
    • Dietary intervention impact on gut microbial gene richness
    • Cotillard, A. et al. Dietary intervention impact on gut microbial gene richness. Nature 500, 585-588 (2013).
    • (2013) Nature , vol.500 , pp. 585-588
    • Cotillard, A.1
  • 22
    • 70449703996 scopus 로고    scopus 로고
    • What are the consequences of the disappearing human microbiota?
    • Blaser, M. J. & Falkow, S. What are the consequences of the disappearing human microbiota? Nat. Rev. Microbiol 7, 887-894 (2009).
    • (2009) Nat. Rev. Microbiol , vol.7 , pp. 887-894
    • Blaser, M.J.1    Falkow, S.2
  • 23
    • 84903722284 scopus 로고    scopus 로고
    • Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice
    • Wang, J. et al. Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice. Proc. Natl. Acad. Sci. USA 111, E2703-E2710 (2014).
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. E2703-E2710
    • Wang, J.1
  • 24
    • 84955622243 scopus 로고    scopus 로고
    • Impact of demographics on human gut microbial diversity in a US Midwest population
    • Chen, J. et al. Impact of demographics on human gut microbial diversity in a US Midwest population. Peer J. 4, e1514 (2016).
    • (2016) Peer J. , vol.4 , pp. e1514
    • Chen, J.1
  • 25
    • 33847226411 scopus 로고    scopus 로고
    • Isolation of RNA from bacterial samples of the human gastrointestinal tract
    • Zoetendal, E. G. et al. Isolation of RNA from bacterial samples of the human gastrointestinal tract. Nat. Protoc. 1, 954-959 (2006).
    • (2006) Nat. Protoc. , vol.1 , pp. 954-959
    • Zoetendal, E.G.1
  • 26
    • 80054913451 scopus 로고    scopus 로고
    • FLASH: Fast length adjustment of short reads to improve genome assemblies
    • Magoc, T. & Salzberg, S. L. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 27, 2957-2963 (2011).
    • (2011) Bioinformatics. , vol.27 , pp. 2957-2963
    • Magoc, T.1    Salzberg, S.L.2
  • 27
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 28
    • 84875623291 scopus 로고    scopus 로고
    • The Protist Ribosomal Reference database (PR2): A catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy
    • Guillou, L. et al. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy. Nucleic Acids Res. 41, D597-D604 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D597-D604
    • Guillou, L.1
  • 29
    • 33644873463 scopus 로고    scopus 로고
    • EMBL nucleotide sequence database: Developments in 2005
    • Cochrane, G. et al. EMBL Nucleotide Sequence Database: developments in 2005. Nucleic Acids Res. 34, D10-D15 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. D10-D15
    • Cochrane, G.1
  • 30
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
    • Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41, D590-D596 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D590-D596
    • Quast, C.1
  • 31
    • 83655181356 scopus 로고    scopus 로고
    • Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure
    • Terrat, S. et al. Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure. Microb. Biotechnol. 5, 135-141 (2012).
    • (2012) Microb. Biotechnol. , vol.5 , pp. 135-141
    • Terrat, S.1
  • 33
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P. D. et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol 75, 7537-7541 (2009).
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 34
    • 0344898137 scopus 로고    scopus 로고
    • Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample
    • Chao, A. & Shen, T. J. Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample. Environmental and Ecological Statistics 429-443 (2003).
    • (2003) Environmental and Ecological Statistics , pp. 429-443
    • Chao, A.1    Shen, T.J.2
  • 35
    • 79959383523 scopus 로고    scopus 로고
    • Metagenomic biomarker discovery and explanation
    • Segata, N. et al. Metagenomic biomarker discovery and explanation. Genome Biol. 12, R60 (2011).
    • (2011) Genome Biol. , vol.12 , pp. R60
    • Segata, N.1
  • 36
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson, M. J. A new method for non-parametric multivariate analysis of variance. Austral Ecology 26, 32-46 (2001).
    • (2001) Austral Ecology , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 38
    • 0023453329 scopus 로고
    • Silhouettes: A graphical aid to the interpretation and validation of cluster analysis
    • Rousseeuw, P. J. Silhouettes: A graphical aid to the interpretation and validation of cluster analysis. Journal of Computational and Applied Mathematics 20, 53-65 (1987).
    • (1987) Journal of Computational and Applied Mathematics , vol.20 , pp. 53-65
    • Rousseeuw, P.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.