Discovery and complete genome sequence of a novel circovirus-like virus in the endangered rowi kiwi, Apteryx rowi

Virus Genes

Volumn 52, Issue 5, 2016, Pages 727-731

  White, Daniel J ^a   Hall, Richard J ^b   Wang, Jing ^b   Moore, Nicole E ^b   Park, Duckchul ^a   McInnes, Kate ^c   Gartrell, Brett D ^d   Tompkins, Daniel M ^e  

^a LANDCARE RESEARCH   (New Zealand)

^b INSTITUTE OF ENVIRONMENTAL SCIENCE AND RESEARCH   (New Zealand)

^c DEPARTMENT OF CONSERVATION   (New Zealand)

^d MASSEY UNIVERSITY   (New Zealand)

^e LANDCARE RESEARCH   (New Zealand)

Author keywords

Circoviridae; Complete genome; CRESS; Novel; Phylogenetics; Rowi kiwi

Indexed keywords

APTERYX ROWI; ARTICLE; BIRD; CIRCOVIRIDAE; CIRCOVIRUS LIKE VIRUS; CONTROLLED STUDY; GENE SEQUENCE; GENOME ANALYSIS; NEXT GENERATION SEQUENCING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REPLICASE GENE; VIRUS CAPSID; VIRUS GENE; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS REPLICATION; VIRUS TRANSMISSION; ANIMAL; CIRCOVIRIDAE INFECTION; CIRCOVIRUS; GENETICS; NEW ZEALAND; OPEN READING FRAME; RATITE; VIROLOGY;

CAPSID PROTEIN; SINGLE STRANDED DNA; VIRUS DNA;

ANIMALS; CAPSID PROTEINS; CIRCOVIRIDAE; CIRCOVIRIDAE INFECTIONS; CIRCOVIRUS; DNA, SINGLE-STRANDED; DNA, VIRAL; GENOME, VIRAL; NEW ZEALAND; OPEN READING FRAMES; PALAEOGNATHAE; PHYLOGENY;

EID: 84984624612     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-016-1342-x     Document Type: Article

References (39)

1. D. Todd, Avian Pathol. 29, 373–394 (2000)
2. G. Arguelloastorga, L. Herreraestrella, R. Riverabustamante, Plant Mol. Biol. 26, 553–556 (1994)
3. M.R. Bassami, D. Berryman, G.E. Wilcox, S.R. Raidal, Virology 249, 453–459 (1998)
4. S.G. Lazarowitz, L.C. Wu, S.G. Rogers, J.S. Elmer, Plant Cell 4, 799–809 (1992)
5. B.M. Meehan, J.L. Creelan, M.S. McNulty, D. Todd, J. Gen. Virol. 78, 221–227 (1997)
6. M. Fenaux, P.G. Halbur, G. Haqshenas, R. Royer, P. Thomas, P. Nawagitgul, M. Gill, T.E. Toth, X.J. Meng, J. Virol. 76, 541–551 (2002)
7. J. Segales, C. Rosell, M. Domingo, Vet. Microbiol. 98, 137–149 (2004)
8. J.C.S. Harding, E.G. Clark, Swine Health Prod. 5, 201–203 (1997)
9. L. Heath, D.P. Martin, L. Warburton, M. Perrin, W. Horsfield, C. Kingsley, E.P. Rybicki, A.L. Williamson, J. Virol. 78, 9277–9284 (2004)
10. S. Kundu, C.G. Faulkes, A.G. Greenwood, C.G. Jones, P. Kaiser, O.D. Lyne, S.A. Black, A. Chowrimootoo, J.J. Groombridge, J. Virol. 86, 5221–5229 (2012)
11. M. Massaro, L. Ortiz-Catedral, L. Julian, J.A. Galbraith, B. Kurenbach, J. Kearvell, J. Kemp, J. van Hal, S. Elkington, G. Taylor, T. Greene, J. van de Wetering, M. van de Wetering, M. Pryde, P. Dilks, S. Heber, T.E. Steeves, M. Walters, S. Shaw, J. Potter, M. Farrant, D.H. Brunton, M. Hauber, B. Jackson, P. Bell, R. Moorhouse, K. McInnes, A. Varsani, Arch. Virol. 157, 1651–1663 (2012)
12. A. Peters, E.I. Patterson, B.G.B. Baker, M. Holdsworth, S. Sarker, S.A. Ghorashi, S.R. Raidal, J. Wildl. Dis. 50, 288–296 (2014)
13. A. Mankertz, K. Hattermann, B. Ehlers, D. Soike, Arch. Virol. 145, 2469–2479 (2000)
14. D. Todd, J.H. Weston, D. Soike, J.A. Smyth, Virology 286, 354–362 (2001)
15. K. Hattermann, C. Schmitt, D. Soike, A. Mankertz, Arch. Virol. 148, 2471–2480 (2003)
16. D. Soike, K. Albrecht, K. Hattermann, C. Schmitt, A. Mankertz, Vet. Rec. 154, 792–793 (2004)
17. H.A. Robertson, J.E. Dowding, G.P. Elliott, R.A. Hitchmough, C.M. Miskelly, C.F.J. O’Donnell, R.G. Powlesland, P.M. Sagar, R.P. Scofield, G.A. Taylor, in Conservation Status of New Zealand Birds, 2012. New Zealand Threat Classification Series 4 (Department of Conservation, Wellington, 2013), p. 22
18. H.J. Ha, M.R. Alley, L. Howe, I. Castro, B. Gartrell, N. Z. Vet. J. 61, 49–52 (2013)
19. M.E. Banda, L. Howe, B.D. Gartrell, K. McInnes, S. Hunter, N.P. French, N. Z. Vet. J. 61, 121–126 (2013)
20. J.L. Mokili, F. Rohwer, B.E. Dutilh, Curr. Opin. Virol. 2, 63–77 (2012)
21. B.D. Gartrell, L. Argilla, S. Finlayson, K. Gedye, A.K. Gonzalez Argandona, I. Graham, L. Howe, S. Hunter, B. Lenting, T. Makan, K. McInnes, S. Michael, K.J. Morgan, I. Scott, D. Sijbranda, N. van Zyl, J.M. Ward, Int. J. Parasitol. Parasites Wildl. 4, 1–10 (2015)
22. R.J. Hall, J. Wang, M. Peacey, N.E. Moore, K. McInnes, D.M. Tompkins, Emerg. Infect. Dis. 20, 697–700 (2014)
23. D.R. Zerbino, E. Birney, Genome Res. 18, 821–829 (2008)
24. D.H. Huson, A.F. Auch, J. Qi, S.C. Schuster, Genome Res. 17, 377–386 (2007)
25. K. Rosario, S. Duffy, M. Breitbart, Arch. Virol. 157, 1851–1871 (2012)
26. J.M.A. van den Brand, M. van Leeuwen, C.M. Schapendonk, J.H. Simon, B.L. Haagmans, A. Osterhaus, S.L. Smits, J. Virol. 86, 2360–2365 (2012)
27. K. Rosario, R.O. Schenck, R.C. Harbeitner, S.N. Lawler, M. Breitbart, Front. Microbiol. (2015). doi:10.3389/fmicb.2015.00696
28. T.G. Phan, B. Kapusinszky, C.L. Wang, R.K. Rose, H.L. Lipton, E.L. Delwart, Plos Pathogens. 7, e1002218 (2011)
29. W. Grimaldi, R.J. Hall, D.J. White, J. Wang, M. Massaro, D.M. Tompkins, Emu. 115, 185–188 (2015)
30. D.L. Cox-Foster, S. Conlan, E.C. Holmes, G. Palacios, J.D. Evans, N.A. Moran, P.-L. Quan, T. Briese, M. Hornig, D.M. Geiser, V. Martinson, D. van Engelsdorp, A.L. Kalkstein, A. Drysdale, J. Hui, J. Zhai, L. Cui, S.K. Hutchison, J.F. Simons, M. Egholm, J.S. Pettis, W.I. Lipkin, Science 318, 283–287 (2007)
31. M.D. Stenglein, C. Sanders, A.L. Kistler, J.G. Ruby, J.Y. Franco, D.R. Reavill, F. Dunker, J.L. DeRisi, Mbio. 3, e00180-12 (2012)
32. D.J. White, R.J. Hall, R. Jakob-Hoff, J. Wang, B. Jackson, D.M. Tompkins, N. Z. Vet. J. 63, 167–170 (2015)
33. H. Ogawa, R. Chahota, K. Ohya, T. Yamaguchi, H. Fukushi, J. Vet. Med. Sci. 75, 503–507 (2013)
34. S. Sarker, S.A. Ghorashi, J.K. Forwood, S.J. Bent, A. Peters, S.R. Raidal, Virology 460, 72–82 (2014)
35. T. Stenzel, T. Piasecki, K. Chrzastek, L. Julian, B.M. Muhire, M. Golden, D.P. Martin, A. Varsani, J. Gen. Virol. 95, 1338–1351 (2014)
36. M.A. Larkin, G. Blackshields, N.P. Brown, R. Chenna, P.A. McGettigan, H. McWilliam, F. Valentin, I.M. Wallace, A. Wilm, R. Lopez, J.D. Thompson, T.J. Gibson, D.G. Higgins, Bioinformatics 23, 2947–2948 (2007)
37. S. Guindon, J.F. Dufayard, V. Lefort, M. Anisimova, M. Hordijk, O. Gascuel, Syst. Biol. 59, 307–321 (2010)
38. S. Guindon, O. Gascuel, Syst. Biol. 52, 696–704 (2003)
39. M. Anisimova, O. Gascuel, Syst. Biol. 55, 539–552 (2006)