Evolution of hepatitis B virus in an acute hepatitis B patient co-infected with genotypes B and C

Journal of General Virology

Volumn 87, Issue 1, 2006, Pages 39-49

  Chen, Bing Fang ^a   Liu, Chun Jen ^b   Jow, Guey Mei ^a   Chen, Pei Jer ^b   Kao, Jia Horng ^b   Chen, Ding Shinn ^b  

^a FU JEN CATHOLIC UNIVERSITY   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY HOSPITAL   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

HEPATITIS B SURFACE ANTIGEN; HEPATITIS B(E) ANTIBODY; HEPATITIS E ANTIGEN; NUCLEOCAPSID PROTEIN; VIRUS DNA; VIRUS ENVELOPE PROTEIN;

ACUTE HEPATITIS; ADULT; AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CASE REPORT; CONTROLLED STUDY; FEMALE; GENE DELETION; GENETIC DISTANCE; GENOTYPE; HEPATITIS B; HEPATITIS B VIRUS; HEPATITIS C; HEPATITIS NON B NON C; HUMAN; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN BINDING; SEQUENCE ANALYSIS; SEROCONVERSION; START CODON; VIRUS MUTANT; VIRUS RECOMBINANT; VIRUS RECOMBINATION; VIRUS STRAIN;

DNA VIRUSES; HEPATITIS B VIRUS; HEPATITIS C VIRUS;

EID: 84984552691     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.81357-0     Document Type: Article

References (52)

1. Akuta, N., Suzuki, F., Kobayashi, M. & 9 other authors (2003). The influence of hepatitis B virus genotype on the development of lamivudine resistance during long-term treatment. J Hepatol 38, 315-321.
2. Arauz-Ruiz, P., Norder, H., Robertson, B. H. & Magnius, L. O. (2002). Genotype H: a new Amerindian genotype of hepatitis B virus revealed in Central America. J Gen Virol 83, 2059-2073.
3. Bahn, A., Gerner, P., Martiné, U., Bortolotti, F. & Wirth, S. (1997). Detection of different viral strains of hepatitis B virus in chronically infected children after seroconversion from HBsAg to anti-HBs indicating viral persistence. J Hepatol 27, 973-978.
4. Barnes, W. M. (1992). The fidelity of Taq polymerase catalyzing PCR is improved by an N-terminal deletion. Gene 112, 29-35.
5. Bock, C.-T., Kubicka, S., Manns, M. P. & Trautwein, C. (1999). Two control elements in the hepatitis B virus S-promoter are important for full promoter activity mediated by CCAAT-binding factor. Hepatology 29, 1236-1247.
6. Bollyky, P. L., Rambaut, A., Harvey, P. H. & Holmes, E. C. (1996). Recombination between sequences of hepatitis B virus from different genotypes. J Mol Evol 42, 97-102.
7. Bowyer, S. M. & Sim, J. G. M. (2000). Relationships within and between genotypes of hepatitis B virus at points across the genome: footprints of recombination in certain isolates. J Gen Virol 81, 379-392.
8. Buckwold, V. E., Xu, Z., Chen, M., Yen, T. S. B. & Ou, J.-H. (1996). Effects of a naturally occurring mutation in the hepatitis B virus basal core promoter on precore gene expression and viral replication. J Virol 70, 5845-5851.
9. Carman, W. F., Jacyna, M. R., Hadziyannis, S., Karayiannis, P., McGarvey, M. J., Makris, A. & Thomas, H. C. (1989). Mutation preventing formation of hepatitis B e antigen in patients with chronic hepatitis B infection. Lancet ii, 588-591.
10. Chan, H. L. Y., Hussain, M. & Lok, A. S. F. (1999). Different hepatitis B virus genotypes are associated with different mutations in the core promoter and precore regions during hepatitis B e antigen seroconversion. Hepatology 29, 976-984.
11. Chan, H. L. Y., Tsui, S. K. W., Tse, C.-H. & 8 other authors (2005). Epidemiological and virological characteristics of 2 subgroups of hepatitis B virus genotype C. J Infect Dis 191, 2022-2032.
12. Chen, B.-F., Kao, J.-H., Liu, C.-J., Chen, D.-S. & Chen, P.-J. (2004a). Genotypic dominance and novel recombinations in HBV genotype B and C co-infected intravenous drug users. J Med Virol 73, 13-22.
13. Chen, B.-F., Chen, P.-J., Jow, G.-M., Sablon, E., Liu, C.-J., Chen, D.-S. & Kao, J.-H. (2004b). High prevalence of mixed genotype infections in hepatitis B virus infected intravenous drug users. J Med Virol 74, 536-542.
14. Georgi-Geisberger, P., Berns, H., Loncarevic, I. F., Yu, Z. Y., Tang, Z. Y., Zentgraf, H. & Schroder, C. H. (1992). Mutations on free and integrated hepatitis B virus DNA in a hepatocellular carcinoma: footprints of homologous recombination. Oncology 49, 386-395.
15. Gerner, P. R., Friedt, M., Oettinger, R., Lausch, E. & Wirth, S. (1998). The hepatitis B virus seroconversion to anti-HBe is frequently associated with HBV genotype changes and selection of preS2-defective particles in chronically infected children. Virology 245, 163-172.
16. Hannoun, C., Norder, H. & Lindh, M. (2000). An aberrant genotype revealed in recombinant hepatitis B virus strains from Vietnam. J Gen Virol 81, 2267-2272.
17. Hou, J., Schilling, R., Janssen, H. L. A., Heijtink, R. A., Williams, R., Schalm, S. W. & Naoumov, N. V. (2001). Molecular characteristics of hepatitis B virus genotype A confer a higher response rate to interferon treatment. J Hepatol 34 (Suppl. 1), 15-16.
18. Huy, T. T.-T., Ushijima, H., Quang, V. X., Win, K. M., Luengrojanakul, P., Kikuchi, K., Sata, T. & Abe, K. (2004). Genotype C of hepatitis B virus can be classified into at least two subgroups. J Gen Virol 85, 283-292.
19. Imamura, T., Yokosuka, O., Kurihara, T., Kanda, T., Fukai, K., Imazeki, F. & Saisho, H. (2003). Distribution of hepatitis B viral genotypes and mutations in the core promoter and precore regions in acute forms of liver disease in patients from Chiba, Japan. Gut 52, 1630-1637.
20. Kao, J.-H. & Chen, D.-S. (2002). Global control of hepatitis B virus infection. Lancet Infect Dis 2, 395-403.
21. Kao, J.-H., Chen, P.-J., Lai, M.-Y. & Chen, D.-S. (2000a). Hepatitis B genotypes correlate with clinical outcomes in patients with chronic hepatitis B. Gastroenterology 118, 554-559.
22. Kao, J.-H., Wu, N.-H., Chen, P.-J., Lai, M.-Y. & Chen, D.-S. (2000b). Hepatitis B genotypes and the response to interferon therapy. J Hepatol 33, 998-1002.
23. Kao, J.-H., Chen, P.-J., Lai, M.-Y. & Chen, D.-S. (2001). Acute exacerbations of chronic hepatitis B are rarely associated with superinfection of hepatitis B virus. Hepatology 34, 817-823.
24. Kao, J.-H., Chen, P.-J., Lai, M.-Y. & Chen, D.-S. (2002). Clinical and virological aspects of blood donors infected with hepatitis B virus genotypes B and C. J Clin Microbiol 40, 22-25.
25. Kao, J.-H., Chen, P.-J., Lai, M.-Y. & Chen, D.-S. (2003). Basal core promoter mutations of hepatitis B virus increase the risk of hepatocellular carcinoma in hepatitis B carriers. Gastroenterology 124, 327-334.
26. Kato, H., Orito, E., Gish, R. G. & 7 other authors (2002). Hepatitis B e antigen in sera from individuals infected with hepatitis B virus of genotype G. Hepatology 35, 922-929.
27. Kimbi, G. C., Kramvis, A. & Kew, M. C. (2004). Distinctive sequence characteristics of subgenotype A1 isolates of hepatitis B virus from South Africa. J Gen Virol 85, 1211-1220.
28. Kobayashi, M., Arase, Y., Ikeda, K. & 12 other authors (2004). Wild-type precore and core promoter sequences in patients with acute self-limited or chronic hepatitis B. Scand J Gastroenterol 39, 53-59.
29. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
30. Kwok, S. & Higuchi, R. (1989). Avoiding false positives with PCR. Nature 339, 237-238.
31. Le Seyec, J., Chouteau, P., Cannie, I., Guguen-Guillouzo, C. & Gripon, P. (1998). Role of the pre-S2 domain of the large envelope protein in hepatitis B virus assembly in infectivity. J Virol 72, 5573-5578.
32. Li, J.-S., Tong, S.-P., Wen, Y.-M., Vitvitski, L., Zhang, Q. & Trepo, C. (1993). Hepatitis B virus genotype A rarely circulates as an HBe-minus mutant: possible contribution of a single nucleotide in the precore region. J Virol 67, 5402-5410.
33. Lole, K. S., Bollinger, R. C., Paranjape, R. S., Gadkari, D., Kulkarni, S. S., Novak, N. G., Ingersoll, R., Sheppard, H. W. & Ray, S. C. (1999). Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73, 152-160.
34. 2 immunogen. J Immunol 144, 3544-3551.
35. Morozov, V., Pisareva, M. & Groudinin, M. (2000). Homologous recombination between different genotypes of hepatitis B virus. Gene 260, 55-65.
36. Norder, H., Couroucé, A.-M. & Magnius, L. O. (1994). Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 198, 489-503.
37. sAg subtypes. Intervirology 47, 289-309.
38. Orito, E., Mizokami, M., Sakugawa, H., Michitaka, K., Ishikawa, K., Ichida, T., Okanoue, T., Yotsuyanagi, H. & Iino, S. (2001). A case-control study for clinical and molecular biological differences between hepatitis B viruses of genotypes B and C. Hepatology 33, 218-223.
39. Owiredu, W. K. B. A., Kramvis, A. & Kew, M. C. (2001). Hepatitis B virus DNA in serum of healthy black African adults positive for hepatitis B surface antibody alone: possible association with recombination between genotypes A and D. J Med Virol 64, 441-454.
40. Poisson, F., Severac, A., Hourioux, C., Goudeau, A. & Roingeard, P. (1997). Both pre-S1 and S domains of hepatitis B virus envelope proteins interact with the core particle. Virology 228, 115-120.
41. Pollicino, T., Zanetti, A. R., Cacciola, I. & 8 other authors (1997). Pre-S defective hepatitis B virus infection in patients with fulminant hepatitis. Hepatology 26, 495-499.
42. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
43. Sánchez-Tapias, J. M., Costa, J., Mas, A., Bruguera, M. & Rodés, J. (2002). Influence of hepatitis B virus genotype on the long-term outcome of chronic hepatitis B in western patients. Gastroenterology 123, 1848-1856.
44. Seeger, C. & Mason, W. S. (2000). Hepatitis B virus biology. Microbiol Mol Biol Rev 64, 51-68.
45. Sobotta, D., Sominskaya, I., Jansons, J., Meisel, H., Schmitt, S., Heermann, K.-H., Kaluza, G., Pumpens, P. & Gerlich, W. H. (2000). Mapping of immunodominant B-cell epitopes and the human serum albumin-binding site in natural hepatitis B virus surface antigen of defined genosubtype. J Gen Virol 81, 369-378.
46. Stuyver, L., De Gendt, S., Van Geyt, C., Zoulim, F., Fried, M., Schinazi, R. F. & Rossau, R. (2000). A new genotype of hepatitis B virus: complete genome and phylogenetic relatedness. J Gen Virol 81, 67-74.
47. Sugauchi, F., Orito, E., Ichida, T. & 9 other authors (2002). Hepatitis B virus of genotype B with or without recombination with genotype C over the precore region plus the core gene. J Virol 76, 5985-5992.
48. Sugauchi, F., Orito, E., Ichida, T. & 10 other authors (2003). Epidemiologic and virologic characteristics of hepatitis B virus genotype B having the recombination with genotype C. Gastroenterology 124, 925-932.
49. Thakur, V., Guptan, R. C., Kazim, S. N., Malhotra, V. & Sarin, S. K. (2002). Profile, spectrum and significance of HBV genotypes in chronic liver disease patients in the Indian subcontinent. J Gastroenterol Hepatol 17, 165-170.
50. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
51. Whalley, S. A., Brown, D., Webster, G. J. M., Jacobs, R., Reignat, S., Bertoletti, A., Teo, C.-G., Emery, V. & Dusheiko, G. M. (2004). Evolution of hepatitis B virus during primary infection in humans: transient generation of cytotoxic T-cell mutants. Gastroenterology 127, 1131-1138.
52. Yeh, S.-H., Tsai, C.-Y., Kao, J.-H. & 8 other authors (2004). Quantification and genotyping of hepatitis B virus in a single reaction by real-time PCR and melting curve analysis. J Hepatol 41, 659-666.