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Volumn 1, Issue , 2016, Pages

Transcriptional interactions suggest niche segregation among microorganisms in the human gut

(23)  Plichta, Damian Rafal a,b   Juncker, Agnieszka Sierakowska a   Bertalan, Marcelo a   Rettedal, Elizabeth c   Gautier, Laurent a   Varela, Encarna d   Manichanh, Chaysavanh d   Fouqueray, Charlène e   Levenez, Florence e,f   Nielsen, Trine g   Doré, Joël f   MacHado, Ana Manuel Dantas c   De Evgrafov, Mari Cristina Rodriguez c   Hansen, Torben g,h   Jørgensen, Torben i,j,k   Bork, Peer l   Guarner, Francisco d   Pedersen, Oluf g,i   Sommer, Morten O A c   Ehrlich, S Dusko f,m   more..


Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; BUTYRIC ACID DERIVATIVE; CARBON DIOXIDE;

EID: 84983688461     PISSN: None     EISSN: 20585276     Source Type: Journal    
DOI: 10.1038/nmicrobiol.2016.152     Document Type: Article
Times cited : (51)

References (32)
  • 1
    • 0036024611 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
    • Hayashi, H., Sakamoto, M. & Benno, Y. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol. Immunol. 46, 535-548 (2002).
    • (2002) Microbiol. Immunol. , vol.46 , pp. 535-548
    • Hayashi, H.1    Sakamoto, M.2    Benno, Y.3
  • 2
    • 84864579031 scopus 로고    scopus 로고
    • Microbial co-occurrence relationships in the human microbiome
    • Faust, K. et al. Microbial co-occurrence relationships in the human microbiome. PLoS Comput. Biol. 8, e1002606 (2012).
    • (2012) PLoS Comput. Biol. , vol.8 , pp. e1002606
    • Faust, K.1
  • 3
    • 84929440325 scopus 로고    scopus 로고
    • Metabolic dependencies drive species co-occurrence in diverse microbial communities
    • Zelezniak, A. et al. Metabolic dependencies drive species co-occurrence in diverse microbial communities. Proc. Natl Acad. Sci. USA 112, 6449-6654 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 6449-6654
    • Zelezniak, A.1
  • 4
    • 84881110826 scopus 로고    scopus 로고
    • Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
    • Levy, R. & Borenstein, E. Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules. Proc. Natl Acad. Sci. USA 110, 12804-12809 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 12804-12809
    • Levy, R.1    Borenstein, E.2
  • 5
    • 84885711264 scopus 로고    scopus 로고
    • Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota
    • Kashyap, P. C. et al. Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota. Proc. Natl Acad. Sci. USA 110, 17059-17064 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 17059-17064
    • Kashyap, P.C.1
  • 6
    • 84892828465 scopus 로고    scopus 로고
    • Diet rapidly and reproducibly alters the human gut microbiome
    • David, L. A. et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563 (2014).
    • (2014) Nature , vol.505 , pp. 559-563
    • David, L.A.1
  • 7
    • 84872535919 scopus 로고    scopus 로고
    • Xenobiotics shape the physiology and gene expression of the active human gut microbiome
    • Maurice, C. F., Haiser, H. J. & Turnbaugh, P. J. Xenobiotics shape the physiology and gene expression of the active human gut microbiome. Cell 152, 39-50 (2013).
    • (2013) Cell , vol.152 , pp. 39-50
    • Maurice, C.F.1    Haiser, H.J.2    Turnbaugh, P.J.3
  • 8
    • 84929300092 scopus 로고    scopus 로고
    • Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism
    • Leone, V. et al. Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism. Cell Host Microbe 17, 681-689 (2015).
    • (2015) Cell Host Microbe , vol.17 , pp. 681-689
    • Leone, V.1
  • 9
    • 84908302963 scopus 로고    scopus 로고
    • Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis
    • Thaiss, C. A. et al. Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis. Cell 159, 514-529 (2014).
    • (2014) Cell , vol.159 , pp. 514-529
    • Thaiss, C.A.1
  • 10
    • 33745163926 scopus 로고    scopus 로고
    • Enhanced biofilm formation and increased resistance to antimicrobial agents and bacterial invasion are caused by synergistic interactions in multispecies biofilms
    • Burmølle, M. et al. Enhanced biofilm formation and increased resistance to antimicrobial agents and bacterial invasion are caused by synergistic interactions in multispecies biofilms. Appl. Environ. Microbiol. 72, 3916-3923 (2006).
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 3916-3923
    • Burmølle, M.1
  • 11
    • 78149469908 scopus 로고    scopus 로고
    • In vitro anaerobic biofilms of human colonic microbiota
    • Sproule-Willoughby, K. M. et al. In vitro anaerobic biofilms of human colonic microbiota. J. Microbiol. Methods 83, 296-301 (2010).
    • (2010) J. Microbiol. Methods , vol.83 , pp. 296-301
    • Sproule-Willoughby, K.M.1
  • 12
    • 33645051439 scopus 로고    scopus 로고
    • H2 and acetate transfers during xylan fermentation between a butyrate-producing xylanolytic species and hydrogenotrophic microorganisms from the human gut
    • Chassard, C. & Bernalier-Donadille, A. H2 and acetate transfers during xylan fermentation between a butyrate-producing xylanolytic species and hydrogenotrophic microorganisms from the human gut. FEMS Microbiol. Lett. 254, 116-122 (2006).
    • (2006) FEMS Microbiol. Lett. , vol.254 , pp. 116-122
    • Chassard, C.1    Bernalier-Donadille, A.2
  • 13
    • 65249149643 scopus 로고    scopus 로고
    • Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
    • Mahowald, M. A. et al. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc. Natl Acad. Sci. USA 106, 5859-5864 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 5859-5864
    • Mahowald, M.A.1
  • 15
    • 84938244327 scopus 로고    scopus 로고
    • Small molecules from the human microbiota
    • Donia, M. S. & Fischbach, M. A. Small molecules from the human microbiota. Science 349, 1254766 (2015).
    • (2015) Science , vol.349 , pp. 1254766
    • Donia, M.S.1    Fischbach, M.A.2
  • 16
    • 34248971890 scopus 로고
    • The competitive exclusion principle
    • Hardin, G. The competitive exclusion principle. Science 131, 1292-1297 (1960).
    • (1960) Science , vol.131 , pp. 1292-1297
    • Hardin, G.1
  • 17
    • 33745610880 scopus 로고    scopus 로고
    • A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism
    • Samuel, B. S. & Gordon, J. I. A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proc. Natl Acad. Sci. USA 103, 10011-10016 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 10011-10016
    • Samuel, B.S.1    Gordon, J.I.2
  • 18
    • 79952401369 scopus 로고    scopus 로고
    • Metatranscriptomic approach to analyze the functional human gut microbiota
    • Gosalbes, M. J. et al. Metatranscriptomic approach to analyze the functional human gut microbiota. PLoS One 6, e17447 (2011).
    • (2011) PLoS One , vol.6 , pp. e17447
    • Gosalbes, M.J.1
  • 19
    • 84901847186 scopus 로고    scopus 로고
    • Relating the metatranscriptome and metagenome of the human gut
    • Franzosa, E. A. et al. Relating the metatranscriptome and metagenome of the human gut. Proc. Natl Acad. Sci. USA 111, E2329-E2338 (2014).
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. E2329-E2338
    • Franzosa, E.A.1
  • 20
    • 84883110880 scopus 로고    scopus 로고
    • Richness of human gut microbiome correlates with metabolic markers
    • Le Chatelier, E. et al. Richness of human gut microbiome correlates with metabolic markers. Nature 500, 541-546 (2013).
    • (2013) Nature , vol.500 , pp. 541-546
    • Le Chatelier, E.1
  • 21
    • 84905730761 scopus 로고    scopus 로고
    • Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
    • Nielsen, H. B. et al. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nat. Biotechnol. 32, 822-828 (2014).
    • (2014) Nat. Biotechnol. , vol.32 , pp. 822-828
    • Nielsen, H.B.1
  • 22
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin, J. et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65 (2010).
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1
  • 23
    • 35448985445 scopus 로고    scopus 로고
    • Bacteroides: The good, the bad, and the nitty-gritty
    • Wexler, H. M. Bacteroides: the good, the bad, and the nitty-gritty. Clin. Microbiol. Rev. 20, 593-621 (2007).
    • (2007) Clin. Microbiol. Rev. , vol.20 , pp. 593-621
    • Wexler, H.M.1
  • 25
    • 77954566982 scopus 로고    scopus 로고
    • Dissecting the in vivo metabolic potential of two human gut acetogens
    • Rey, F. E. et al. Dissecting the in vivo metabolic potential of two human gut acetogens. J. Biol. Chem. 285, 22082-22090 (2010).
    • (2010) J. Biol. Chem. , vol.285 , pp. 22082-22090
    • Rey, F.E.1
  • 26
    • 84922297921 scopus 로고    scopus 로고
    • Bifidobacterium bifidum as an example of a specialized human gut commensal
    • Turroni, F. et al. Bifidobacterium bifidum as an example of a specialized human gut commensal. Front. Microbiol. 5, 437 (2014).
    • (2014) Front. Microbiol. , vol.5 , pp. 437
    • Turroni, F.1
  • 29
    • 0029804257 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthetase gene regulation in Bacillus subtilis
    • Condon, C., Grunberg-Manago, M. & Putzer, H. Aminoacyl-tRNA synthetase gene regulation in Bacillus subtilis. Biochimie 78, 381-389 (1996).
    • (1996) Biochimie , vol.78 , pp. 381-389
    • Condon, C.1    Grunberg-Manago, M.2    Putzer, H.3
  • 30
    • 84927693444 scopus 로고    scopus 로고
    • High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation
    • Ren, D., Madsen, J. S., Sørensen, S. J. & Burmølle, M. High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation. ISME J. 9, 81-89 (2015).
    • (2015) ISME J. , vol.9 , pp. 81-89
    • Ren, D.1    Madsen, J.S.2    Sørensen, S.J.3    Burmølle, M.4
  • 31
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J. D. & Tibshirani, R. Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA 100, 9440-9445 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 32
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504 (2003).
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1


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