Model-based estimation of microscopic anisotropy in macroscopically isotropic substrates using diffusion MRI

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 9123, Issue , 2015, Pages 699-710

  Ianuş, Andrada ^a   Drobnjak, Ivana ^a   Alexander, Daniel C ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPY; DIFFUSION; INTELLIGENT SYSTEMS; MAGNETIC RESONANCE IMAGING; MEDICAL IMAGING; PORE SIZE; POROUS MATERIALS; SIZE DISTRIBUTION; SUBSTRATES;

BIOLOGICAL TISSUES; DIFFERENT PROTOCOLS; DOUBLE PULSED FIELD GRADIENTS; ISOTROPIC SUBSTRATES; MICROSCOPIC ANISOTROPIES; MODEL BASED APPROACH; MODEL-BASED ESTIMATION; PARAMETER ESTIMATE;

MONTE CARLO METHODS;

ALGORITHM; ANISOTROPY; BRAIN; COMPUTER ASSISTED DIAGNOSIS; COMPUTER SIMULATION; CYTOLOGY; DIFFUSION TENSOR IMAGING; HUMAN; IMAGE ENHANCEMENT; MICROSCOPY; MYELINATED NERVE; PROCEDURES; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; STATISTICAL MODEL; ULTRASTRUCTURE;

ALGORITHMS; ANISOTROPY; BRAIN; COMPUTER SIMULATION; DIFFUSION TENSOR IMAGING; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MICROSCOPY; MODELS, STATISTICAL; NERVE FIBERS, MYELINATED; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 84983672060     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-319-19992-4_55     Document Type: Conference Paper

References (23)

1. Panagiotaki, E., Walker-Samuel, S., Siow, B., Johnson, S.P., Rajkumar, V., Pedley, R.B., Lythgoe, M.F., Alexander, D.C.: Noninvasive quantification of solid tumor microstructure using verdict MRI. Cancer Res. 74, 1902–1912 (2014)
2. Savadiev, P., Campbell, J.S.W., Descoteaux, M., Deriche, R., Pike, G.B., Siddiqi, K.: Labeling of ambiguous subvoxel fibre bundle configurations in high angular resolution diffusion MRI. NeuroImage 41, 58–68 (2008)
3. Nilsson, M., Latt, J., Stahlberg, F., van Westen, D., Hagslätt, H.: The importance of axonal undulation in diffusion MR measurements: a monte carlo simulation study. NMR Biomed. 25, 795–805 (2012)
4. Kleinnijenhuis, M., Zerbi, V., Küsters, B., Slump, C.H., Barth, M., van Cappellen vanWalsum, A.: Layer-specific diffusion weighted imaging in human primary visual cortex in vitro. Cortex 49, 2569–2582 (2013)
5. Novikov, M., Jensen, J.H., Helpern, J.A., Fieremans, E.: Revealing mesoscopic structural universality with diffusion. Proc. Nat. Acad. Sci. 11, 5088–5093 (2014)
6. Assaf, Y., Blumenfeld-Katzir, T., Yovel, Y., Basser, P.J.: AxCaliber: a method for measuring axon diameter distribution from diffusion MRI. Magn. Reson. Med. 59, 1347–1354 (2008)
7. Alexander, D.C., Hubbard, P.L., Hall, M.G., Moore, E.A., Ptito, M., Parker, G.J.M., Dyrby, T.B.: Orientationally invariant indices of axon diameter and density from diffusion MRI. NeuroImage 52, 1374–1389 (2010)
8. Ferizi, U., Schneider, T., Panagiotaki, E., Nedjati-Gilani, G., Zhang, H., Wheeler- Kingshott, C., Alexander, D.C.: A ranking of diffusion MRI compartment models with in vivo human brain data. Magn. Reson. Med. 72, 1785–92 (2014)
9. Cory, D.G., Garroway, A.N., Miller, J.B.: Applications of spin transport as a probe of local geometry. Polym. Prepr. 31, 149–150 (1990)
10. Mitra, P.P.:Multiple wave-vector extensions of the NMR pulsed-field-gradient spinecho diffusion measurement. Phys. Rev. B 51(21), 15074–15078 (1995)
11. Lawrenz, M., Koch, M.A., Finsterbusch, J.: A tensor model and measures of microscopic anisotropy for double-wave-vector diffusion-weighting experiments with long mixing times. J. Magn. Reson. 202, 43–56 (2010)
12. Jespersen, S.N., Lundell, H., Sonderby, C.K., Dyrby, T.B.: Orientationally invariant metrics of apparent compartment eccentricity from double pulsed field gradient diffusion experiments. NMR Biomed. 26, 1647–1662 (2013)
13. Lasic, S., Szczepankiewicz, F., Eriksson, S., Nilsson, M., Topgaard, D.: Microanisotropy imaging: quantification of microscopic diffusion anisotropy and orientational order parameter by diffusion MRI with magic-angle spinning of the q-vector. Front. Phys. 2 (2014)
14. Ozarslan, E.: Compartment shape anisotropy (CSA) revealed by double pulsed field gradient MR. J. Magn. Reson. 199, 56–67 (2009)
15. Shemesh, N., Ozarslan, E., Basser, P.J., Cohen, Y.: Accurate noninvasive measurement of cell size and compartment shape anisotropy in yeast cells using doublepulsed field gradient MR. NMR Biomed. 25, 236–246 (2012)
16. Zhang, H., Hubbard, P.L., Parker, G.J.M., Alexander, D.C.: Axon diameter mapping in the presence of orientation dispersion with diffusion MRI. NeuroImage 56, 1301–1315 (2011)
17. Komlosh, M.E., Ozarslan, E., Lizak, M.J., Horkay, F., Schram, V., Shemesh, N., Cohen, Y., Basser, P.J.: Pore diameter mapping using double pulsed-field gradient MRI and its validation using a novel glass capillary array phantom. J. Magn. Reson. 208, 128–135 (2011)
18. Hall, M., Alexander, D.C.: Convergence and parameter choice for Monte-Carlo simulations of diffusion MRI. IEEE Trans. Med. Imaging 28, 1354–1364 (2009)
19. Neuman, C.H.: Spin echo of spins diffusing in a bounded medium. J. Chem. Phys. 60, 4508–4511 (1974)
20. Assaf, Y., Freidlin, R.Z., Rohde, G.K., Basser, P.J.: New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter. Magn. Reson. Med. 52, 965–978 (2004)
21. Stepisnik, J.: Time-dependent self-diffusion by NMR spin echo. Phys. B 183, 343–350 (1993)
22. Dyrby, T.B., Søgaard, L.V., Hall, M.G., Ptito, M., Alexander, D.C.: Contrast and stability of the axon diameter index from microstructure imaging with diffusion MRI. Magn. Reson. Med. 70, 711–721 (2013)
23. Alexander, D.C.: A general framework for experiment design in diffusion MRI and its application in measuring direct tissue-microstructure features. Magn. Reson. Med. 60, 439–448 (2008)