A ranking of diffusion MRI compartment models with in vivo human brain data

Magnetic Resonance in Medicine

Volumn 72, Issue 6, 2014, Pages 1785-1792

  Ferizi, Uran ^a,b   Schneider, Torben ^b   Panagiotaki, Eleftheria ^a   Nedjati Gilani, Gemma ^a   Zhang, Hui ^a   Wheeler Kingshott, Claudia A M ^b   Alexander, Daniel C ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Brain imaging; Diffusion magnetic resonance imaging; Microstructure imaging; White matter

Indexed keywords

BRAIN; BRAIN MAPPING; DIFFUSION; LEARNING TO RANK; MAGNETISM; MICROSTRUCTURE; RESONANCE; TISSUE;

BRAIN IMAGING; CLINICAL SCANNERS; DIFFUSION MAGNETIC RESONANCE IMAGING; HIERARCHICAL STRUCTURES; MICROSTRUCTURE IMAGING; RESTRICTED DIFFUSION; TISSUE MICROSTRUCTURES; WHITE MATTER;

MAGNETIC RESONANCE IMAGING;

ADULT; ARTICLE; BOOTSTRAPPING; COMPARTMENT MODEL; CORPUS CALLOSUM; DIFFUSION; DIFFUSION WEIGHTED IMAGING; HUMAN; HUMAN EXPERIMENT; IN VIVO STUDY; NEUROIMAGING; NORMAL HUMAN; NUCLEAR MAGNETIC RESONANCE SCANNER; REPRODUCIBILITY; WHITE MATTER; ANATOMY AND HISTOLOGY; BIOLOGICAL MODEL; BODY WATER; BRAIN; COMPUTER ASSISTED DIAGNOSIS; COMPUTER SIMULATION; METABOLISM; PROCEDURES; SENSITIVITY AND SPECIFICITY;

BODY WATER; BRAIN; COMPUTER SIMULATION; DIFFUSION; DIFFUSION MAGNETIC RESONANCE IMAGING; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MODELS, NEUROLOGICAL; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 84911986824     PISSN: 07403194     EISSN: 15222594     Source Type: Journal    
DOI: 10.1002/mrm.25080     Document Type: Article

References (24)

1. Basser PJ, Mattiello J, Le Bihan D. Estimation of the effective self-diffusion tensor from the NMR spin echo. J Magn Reson 1994;103:247-254.
2. Sotak CH. The role of diffusion tensor imaging in the evaluation of ischaemic brain injury: a review. NMR Biomed 2002;15:561-569.
3. Stanisz GJ, Szafer A, Wright GA, Henkelman M. An analytical model of restricted diffusion in bovine optic nerve. Magn Reson Med 1997;37:103-111.
4. Behrens TE, Woolrich MW, Jenkinson M, Johansen-Berg H, Nunes RG, Clare S, Matthews PM, Brady JM, Smith SM. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn Reson Med 2003;50:1077-1088.
5. Assaf Y, Freidlin RZ, Rohde GK, Basser PJ. New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter. Magn Reson Med 2004;52:965-978.
6. Assaf Y, Blumenfeld-Katzir T, Yovel Y, Basser PJ. AxCaliber: a method for measuring axon diameter distribution from diffusion MRI. Magn Reson Med 2008;59:1347-1354.
7. Barazany D, Basser PJ, Assaf Y. In vivo measurement of aXon diameter distribution in the corpus callosum of rat brain. Brain 2009;132:1210-1220.
8. Ale Xander DC, Hubbard PL, Hall MG, Moore EA, Ptito M, Parker GJM, Dyrby TB. Orientationally invariant indices of aXon diameter and density from diffusion MRI. Neuroimage 2010;52:1374-1389.
9. Dyrby TB, Soegaard LV, Hall MG, Ptito M, Alexander DC. Contrast and stability of the axon diameter index from microstructure imaging with diffusion MRI. Magn Reson Med 2012;10:1522-2594.
10. Zhang H, Hubbard PL, Parker GJM, Alexander DC. Axon diameter mapping in the presence of orientation dispersion with diffusion MRI. Neuroimage 2011;56:1301-1315.
11. Panagiotaki E, Schneider T, Siow B, Hall MG, Lythgoe MF, Alexander DC. Compartment models of the diffusion MR signal in brain white matter: a taxonomy and comparison. Neuroimage 2012;59:2241-2254.
12. Shepherd TM, Thelwall PE, Stanisz GJ, Blackband SJ. Aldehyde fixative solutions alter the water relaxation and diffusion properties of nervous tissue. Magn Reson Med 2009;62:26-34.
13. Cook PA, Bai Y, Nedjati-Gilani S, Seunarine KK, Hall MG, Parker GJ, Alexander DC. Camino: open-source diffusion-MRI reconstruction and processing. In Proceedings of the 14th Annual Meeting of ISMRM, Seattle, Washington, USA, 2006. p. 2759.
14. Wilm BJ, Svensson J, Henning A, Pruessmann KP, Boesiger P, Kollias SS. Reduced field-of-view MRI using outer volume suppression for spinal cord diffusion imaging. Magn Reson Med 2007;57:625-630.
15. Alexander DC. Modelling, fitting and sampling in diffusion MRI. In: Weichert J, Hagen H, editors. Visualization and processing of tensor fields. Berlin: Springer Verlag, 2009, pp 3-20.
16. Jones DK, Basser PJ. Squashing peanuts and smashing pumpkins: how noise distorts diffusion-weighted MR data. Magn Reson Med 2004;52:979-993.
17. Schwarz G. Estimating the dimension of a model. Ann Stat 1978;6:461-464.
18. Efron B. Bootstrap methods: another look at the jackknife. Ann Stat 1979;7:1-26.
19. Zhang H, Schneider T, Wheeler-Kingshott CA, Alexander DC. NODDI: practical in vivo neurite orientation dispersion and density imaging of the human brain. Neuroimage 2012;61:1000-1016.
20. Nilsson M, Lätt J, Ståhlberg F, Van Westen D, Hagslätt H. The importance of axonal undulation in diffusion MR measurements: a Monte Carlo simulation study. NMR Biomed 2012;25:795-805.
21. Beaulieu C. The basis of anisotropic water diffusion in the nervous system-a technical review. NMR Biomed 2002;15:435-455.
22. Sotiropoulos S, Behrens TE, Jbabdi S. Ball and rackets: inferring fibre fanning from diffusion-weighted MRI. Neuroimage 2012;60:1412-1425.
23. Alexander DC. A general framework for experiment design in diffusion MRI and its application in measuring direct tissuemicrostructure features. Magn Reson Med 2008;60:439-448.
24. Tanner JE, Stejskal EO. Restricted self-diffusion of protons in colloidal systems by pulsed-gradient spin echo method. J Chem Phys 1968;49:1768.