Comparison of microbial communities during the anaerobic digestion of Gracilaria under mesophilic and thermophilic conditions

World Journal of Microbiology and Biotechnology

Volumn 32, Issue 10, 2016, Pages

  Azizi, Aqil ^a,b   Kim, Wonduck ^a,b   Lee, Jung Hyun ^a,b  

^a Korea Research Institute of Ships and Ocean Engineering   (South Korea)

^b University of Science and Technology (UST)   (South Korea)

Author keywords

Anaerobic digestion; Gracilaria; Mesophilic; Microbial community; Thermophilic

Indexed keywords

METHANE; MICROORGANISMS; SUBMARINE GEOLOGY; VOLATILE FATTY ACIDS;

GRACILARIA; MESOPHILIC; MICROBIAL COMMUNITIES; MICROBIAL DIVERSITY; OPERATIONAL STABILITY; THERMOPHILIC; THERMOPHILIC ANAEROBIC DIGESTER; THERMOPHILIC CONDITIONS;

ANAEROBIC DIGESTION;

METHANE; VOLATILE FATTY ACID; WASTE WATER;

ANAEROBIC GROWTH; BACTERIUM; BATCH CELL CULTURE; BIODIVERSITY; BIOREACTOR; CLASSIFICATION; COMPARATIVE STUDY; EURYARCHAEOTA; GRACILARIA; HYDROLYSIS; ISOLATION AND PURIFICATION; MICROBIAL CONSORTIUM; MICROBIOLOGY; PH; SEDIMENT; TEMPERATURE; WASTE WATER;

ANAEROBIOSIS; BACTERIA; BATCH CELL CULTURE TECHNIQUES; BIODIVERSITY; BIOREACTORS; EURYARCHAEOTA; FATTY ACIDS, VOLATILE; GEOLOGIC SEDIMENTS; GRACILARIA; HYDROGEN-ION CONCENTRATION; HYDROLYSIS; METHANE; MICROBIAL CONSORTIA; TEMPERATURE; WASTE WATER;

EID: 84983628571     PISSN: 09593993     EISSN: 15730972     Source Type: Journal    
DOI: 10.1007/s11274-016-2112-6     Document Type: Article

References (53)

1. Adekunle KF, Okolie JA (2015) A review of biochemical process of anaerobic digestion. Adv Biosci Biotechnol 6:205–212
2. Akuzawa M, Hori T, Haruta S, Ueno Y, Ishii M, Igarashi Y (2011) Distinctive responses of metabolically active microbiota to acidification in a thermophilic anaerobic digester. Microbial Ecol 61:595–605
3. Amani T, Nosrati M, Sreekrishnan TR (2010) Anaerobic digestion from the viewpoint of microbiological, chemical, and operational aspects: a review. Environ Rev 18:255–278
4. APHA (1995) Standard methods for the examination of water and wastewater, 18th edn. American Public Health Association, Washington
5. Baena S, Fardeau ML, Labat M, Ollivier B, Garcia JL, Patel BKC (2000) Aminobacterium mobile sp. nov., a new anaerobic amino-acid-degrading bacterium. Int J Syst Evol Microbiol 50:259–264
6. Balch WE, Fox CE, Magrum LJ, Woese CR, Wolfe RS (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296
7. Borrel G, Harris HMB, Parisot N, Gaci N, Tottey W, Mihajlovski A, Deane J, Gribaldo S, Bardot O, Peyretaillade E, Peyret P, O’Toole PW, Brugère J-F (2013) Genome sequence of “Candidatus Methanomassiliicoccus intestinalis” Issoire-Mx1, a third Thermoplasmatales-related methanogenic archaeon from human feces. Genome Announc 1:e00453-13. doi:10.1128/genomeA.00453-13
8. Borrel G, Parisot N, Harris HMB, Peyretaillade E, Gaci N, Tottey W, Bardot O, Raymann K, Gribaldo S, Peyret P, O’Toole PW, Brugère JF (2014) Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine. BMC Genomics BioMed Central 15(1):679
9. Cai S, Dong X (2010) Cellulosilyticum ruminicola gen. nov., sp. nov., isolated from the rumen of yak, and reclassification of Clostridium lentocellum as Cellulosilyticum lentocellum comb. nov. Int J Syst Evol Microbiol 60:845–849
10. Cantrell KB, Ducey T, Ro KS, Hunt PG (2008) Livestock waste–to- bioenergy generation opportunities. Bioresour Technol 99:7941–7953
11. Chen M (1983) Adaptation of mesophilic anaerobic sewage fermentor populations to thermophilic temperatures. Appl Environ Microbiol 45:1271–1276
12. Chynoweth DP, Owens JM, Legrand R (2001) Renewable methane from anaerobic digestion of biomass. Renew Energy 22:1–8
13. DeLong EF (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685–5689
14. Desvaux M (2005) Clostridium cellulolyticum: model organism of mesophilic cellulolytic clostridia. FEMS Microbiol Rev 29(4):741–764
15. Eddy SR (2011) Accelerated profile HMM searches. PLoS Comput Biol 7(10):e1002195
16. Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27(16):2194–2200
17. Felsenstein J (1985) Phylogenies and the comparative method. Am Nat 125:1–15
18. Franke-Whittle IH, Walter A, Ebner C, Insam H (2014) Investigation into the effect of high concentrations of volatile fatty acids in anaerobic digestion on methanogenic communities. Waste Manag 34(11):2080–2089
19. Garcia LS, Jangid K, Whitman WB, Das KC (2011) Transition of microbial communities during the adaption to anaerobic digestion of carrot waste. Bioresour Technol 102:7249–7256
20. Green RH (1989) Power analysis and practical strategies for environmental monitoring. Environ Res 50:195–205
21. Hattori S, Kamagata Y, Hanada S, Shoun H (2000) Thermacetogeniumphaeum gen. nov., sp. nov., a strictly anaerobic, thermophilic, syntrophic acetate-oxidizing bacterium. Int J Syst Evol Microbiol 50:1601–1609
22. Honda T, Fujita T, Tonouchi A (2013) Aminivibrio pyruvatiphilus gen. nov., sp. nov., an anaerobic, amino-acid-degrading bacterium from soil of a Japanese rice field. Int J Syst Evol Microbiol 63:3679–3686
23. Hughes AD, Kelly MS, Black KD, Stanley MS (2012) Biogas from macroalgae: is it time to revisit the idea? Biotechnol Biofuels 5:86
24. Jeon YS, Chun J, Kim BS (2013) Identification of household bacterial community and analysis of species shared with human microbiome. Curr Microbiol 67(5):557–563
25. Jukes TH, Cantor CR (1969) Evolution of protein molecules. Academic Press, New York, pp 21–132
26. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, Chichester, pp 115–175
27. Li WW, Yu HQ (2011) Biohydrogen production with high-rate bioreactors. In: Pandey A et al (eds) Biofuels alternative feedstocks and conversion processes. Elsevier, San Diego
28. Li YF, Nelson MC, Chen PH, Graf J, Li Y, Yu Z (2015) Comparison of the microbial communities in solid-state anaerobic digestion (SS-AD) reactors operated at mesophilic and thermophilic temperatures. Appl Microbiol Biotechnol 99(2):969–980
29. Liu Y, Qiao JT, Yuan XZ, Guo RB, Qiu YL (2014) Hydrogenispora ethanolica gen. nov., sp. nov., an anaerobic carbohydrate-fermenting bacterium from anaerobic sludge. Int J Syst Evol Microbiol 64:1756–1762
30. Mhuantong W, Charoensawan V, Kanokratana P, Tangphatsornruang S, Champreda V (2015) Comparative analysis of sugarcane bagasse metagenome reveals unique and conserved biomass-degrading enzymes among lignocellulolytic microbial communities. Biotechnol Biofuels 8:16
31. Migliore G, Alisi C, Sprocati AR, Massi E, Ciccoli R, Lenzi M, Wang A, Cremisini C (2012) Anaerobic digestion of macroalgal biomass and sediments sourced from the Orbetello lagoon, Italy. Biomass Bioenergy 42:69–77
32. Miura T, Kita A, Okamura Y, Aki T, Matsumura Y, Tajima T, Kato J, Nakashimada Y (2014) Evaluation of marine sediments as microbial sources for methane production from brown algae under high salinity. Bioresour Technol 169:362–366
33. Nesbø CL, Bradnan DM, Adebusuyi A, Dlutek M, Petrus AK, Foght J, Doolittle WF, Noll KM (2012) Mesotoga prima gen. nov., spnov., the first described mesophilic species of the Thermotogales. Extremophiles 16:387–393
34. Oren A, Garrity GM (2013) List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 63:3931–3934
35. Pelletier E, Kreimeyer A, Bocs S, Rouy Z, Gyapay G, Chouari R, Rivière D, Ganesan A, Daegelen P, Sghir A (2008) ‘‘Candidatus Cloacamonas acidaminovorans’’: genome sequence reconstruction provides a first glimpse of a new bacterial division. J Bacteriol 190(7):2572–2579
36. Pope PB, Vivekanand V, Eijsink VGH, Horn SJ (2013) Microbial community structure in a biogas digester utilizing the marine energy crop Saccharina latissimi. Biotech 3:407–414
37. 2)-utilizing species Eubacterium limosum and pectin-fermenting Lachnospiramultiparus during growth in a pectin medium. Appl Environ Microbiol 42:20–22
38. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406–425
39. Sasaki K, Morita M, Sasaki D, Nagaoka J, Matsumoto N, Ohmura N, Shinozaki H (2011) Syntrophic degradation of proteinaceous materials by the thermophilic strains Coprothermobacter proteolyticus and Methanothermobacter thermautotrophicus. J Biosci Bioeng 112:469–472
40. Schink B, Zeikus J (1980) Microbial methanol formation: a major end product of pectin metabolism. Curr Microbiol 4:387–389
41. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75(23):7537–7541
42. Schramm W, Lehnberg W (1984) Mass culture of brackish-water-adapted seaweeds in sewage-enriched seawater II. Fermentation for biogas production. Hydrobiologia 116–117(1):276–281
43. Shi J, Wang Z, Stiverson JA, Yu Z, Li Y (2013) Reactor performance and microbial community dynamics during solid-state anaerobic digestion of corn stover at mesophilic and thermophilic conditions. Bioresour Technol 136:574–581
44. Snelling TJ, Genc B, McKain N, Watson M, Waters SM, Creevey CJ, Wallace RJ (2014) Diversity and community composition of methanogenic archaea in the rumen of Scottish upland sheep assessed by different methods. PLoS ONE 9(9):e106491
45. Su XL, Tian Q, Zhang J, Yuan XZ, Shi XS, Guo RB, Qiu YL (2014) Acetobacteroides hydrogenigenes gen. nov., sp. nov., an anaerobic hydrogen-producing bacterium in the family Rikenellaceae isolated from a reed swamp. Int J Syst Evol Microbiol 64(9):2986–2991
46. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882
47. Vanegas CH, Bartlett J (2012) Anaerobic digestion of Laminaria digitata: the effect of temperature on biogas production and composition. Waste Biomass Valor 4:509–515. doi:10.1007/s12649-012-9181-z
48. Vanegas CH, Bartlett J (2013) Green energy from marine algae: biogas production and composition from the anaerobic digestion of Irish seaweed species. Environ Technol 34(15):2277–2283
49. Wang Y, Zhang Y, Wang J, Meng L (2009) Effects of volatile fatty acid concentrations on methane yield and methanogenic bacteria. Biomass Bioenergy 33(5):848–885
50. Wang X, Sharp CE, Jones GM, Grasby SE, Brady AL, Dunfield PF (2015) Stable-isotope-probing identifies uncultured Planctomycetes as primary degraders of a complex heteropolysaccharide in soil. Appl Environ Microbiol 81:4607–4615
51. Wei N, Quarterman J, Jin YS (2013) Marine macroalgae: an untapped resource for producing fuels and chemicals. Trends Biotechnol 31:70–77
52. Westerholm M, Roosand S, Schnürer A (2011) Tepidanaerobacter acetatoxydans sp. nov., an anaerobic, syntrophic acetate-oxidizing bacterium isolated from two ammonium-enriched mesophilic methanogenic processes. Syst Appl Microbiol 34:260–266
53. Yokoyama H, Wagner ID, Wiegel J (2010) Caldicoprobacter oshimai gen. nov., sp. nov., an anaerobic, xylanolytic, extremely thermophilic bacterium isolated from sheep faeces, and proposal of Caldicoprobacteraceae fam. nov. Int J Syst Evol Microbiol 60:67–71