Placement of the rediscovered Myotis planiceps (Chiroptera: Vespertilionidae) within the Myotis phylogeny

Journal of Mammalogy

Volumn 97, Issue 3, 2016, Pages 701-712

  Haynie, Michelle L ^{a,b,c,d,e,f,g}   Tsuchiya, Mirian T N ^{a,b,c,d,e,f,g}   Ospina Garcés, Sandra Milena ^{a,b,c,d,e,f,g}   Arroyo Cabrales, Joaquín ^{a,b,c,d,e,f,g}   Medellín, Rodrigo A ^{a,b,c,d,e,f,g}   Polaco, Oscar J ^{a,b,c,d,e,f,g}   Maldonado, Jesús E ^{a,b,c,d,e,f,g}  

^a SMITHSONIAN CONSERVATION BIOLOGY INSTITUTE   (United States)

^b DEPARTMENT OF PALEOBIOLOGY   (United States)

^c GEORGE MASON UNIVERSITY   (United States)

^d UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^e INSTITUTO NACIONAL DE ANTROPOLOGÍA E HISTORIA   (Mexico)

^f INSTITUTO DE ECOLOGÍA   (Mexico)

^g UNIVERSITY OF CENTRAL OKLAHOMA   (United States)

Author keywords

cytochrome b gene; Myotis; Myotis planiceps; Myotis volans; phylogenetics; Recombination Activating Gene 2

Indexed keywords

ADAPTATION; BAT; DIVERGENCE; ENDANGERED SPECIES; EXTINCTION; GENETIC ANALYSIS; MITOCHONDRIAL DNA; MORPHOLOGY; PHYLOGENETICS; PHYLOGENY;

COAHUILA; MEXICO [NORTH AMERICA]; NUEVO LEON; ZACATECAS;

CHIROPTERA; MYOTIS; MYOTIS EVOTIS; MYOTIS LUCIFUGUS; MYOTIS PLANICEPS; MYOTIS SODALIS; MYOTIS THYSANODES; MYOTIS VOLANS; VESPERTILIONIDAE;

EID: 84983329116     PISSN: 00222372     EISSN: 15451542     Source Type: Journal    
DOI: 10.1093/jmammal/gyv216     Document Type: Article

References (59)

1. Altekar, G., S. Dwarkadas, J. P. Huelsenbeck, and F. Ronquist. 2004. Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20:407-415.
2. Arbog ast, B. S., and J. B. Slowinski. 1998. Pleistocene speciation and the mitochondrial DNA clock. Science 282:1955.
3. Arroyo-Cabrales, J., et al. 2005. Rediscovery of the Mexican flat-headed bat Myotis planiceps (Vespertilionidae). Acta Chiropterologica 7:309-318.
4. Baillie, J., and B. Groombridge. 1996. IUCN red list of threatened animals. The IUCN Special Survival Commission. IUCN, Gland, Switzerland, 341.
5. Baker, R. H. 1955. A new species of bat (genus Myotis) from Coahuila, México. Proceedings of the Biological Society of Washington 68:165-166.
6. Bandelt, H.-J., P. Forster, and A. Röhl. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16:37-48.
7. Bickham, J. W., J. C. Patto n, D. A. Schlitter, I. L. Rautenbach, and R. L. Honeycutt. 2004. Molecular phylogenetics, karyotypic diversity, and partition of the genus Myotis (Chiroptera: Vespertilionidae). Molecular Phylogenetics and Evolution 33:333-338.
8. Bickham, J. W., C. C. Woo d, and J. C. Patton. 1995. Biogeographic implications of cytochrome b sequences and allozymes in sockeye (Oncorhynchus nerka). Journal of Heredity 86:140-144.
9. Bradley, R. D., and R. J. Baker. 2001. A test of the genetic species concept: cytochrome-b sequences and mammals. Journal of Mammalogy 82:960-973.
10. Chenna, R., et al. 2003. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Research 31:3497-3500.
11. den Tex, R.-J., J. E. Maldonado, R. W. Thoringto n, and J. A. Leonard. 2010. Nuclear copies of mitochondrial genes: another problem for ancient DNA. Genetica 138:979-984.
12. Drummo nd, A. J., S. Y. W. Ho, M. J. Phillips, and A. Rambaut. 2006. Relaxed phylogenetics and dating with confidence. PLoS Biology 4:e88.
13. Drummo nd, A. J., M. A. Suchard, D. Xie, and A. Rambaut. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29:1969-1973.
14. Dumo nt, E. 2004. Patterns of diversity in cranial shape. Acta Chiropterologica 6:59-74.
15. Esteva, M., F. A. Cervantes, S. V. Brant, and J. A. Coo k. 2010. Molecular phylogeny of long-tailed shrews (genus Sorex) from México and Guatemala. Zootaxa 2615:47-65.
16. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
17. Fluxus Technology. 2012. Free phylogenetic network software. http://www.fluxus-engineering.com/sharenet.htm. Accessed 9 December 2013.
18. Goloboff, P., J. Farris, and K. Nixon. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24:774-786.
19. Heled, J., and A. J. Drummo nd. 2012. Calibrated tree priors for relaxed phylogenetics and divergence time estimation. Systematic Biology 61:138-149.
20. Hewitt, G. M. 1996. Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society 58:247-276.
21. Huelsenbeck, J. P., and F. R. Ronquist. 2001. MrBayes: Bayesian inference for phylogeny. Biometrics 17:754-756.
22. IUCN. 2008. The IUCN red list of threatened species. http://www. redlist.org/search/details.php?species=14191. Accessed 30 April 2011.
23. Jimenez, G. A. 1968. Nuevos registros de murciélagos para Nuevo León, México. Anales del Instituto de Biologia, Universidad Nacional Autonoma de Mexico, Serie Zoologia 39:133-144.
24. Kays, R. W., and D. E. Wilson. 2009. Mammals of North America. 2nd ed. Princeton University Press, Princeton, New Jersey.
25. Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
26. Kocher, T. D., et al. 1989. Dynamics of mitochondrial DNA evolution in mammals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences 86:6196-6200.
27. Lanfear, R., B. Calcott, S. Y. W. Ho, and S. Guindon. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29:1695-1701.
28. Larsen, R. J., et al. 2012. Genetic diversity of Neotropical Myotis (Chiroptera: Vespertilionidae) with an emphasis on South American species. PLoS One 7:e46578.
29. Matson, J. O. 1975. Myotis planiceps. Mammalian Species 60:1-2.
30. Matson, J. O., and D. R. Patto n. 1975. Notes on some bats from the state of Zacatecas, México. Contributions to Science, Los Angeles County Museum of Natural History 263:1-12.
31. Miller, M. A., W. Pfeiff er, and T. Schwartz. 2010. The CIPRES Science Gateway V. 3.3. www.phylo.org. Acesssed 1 September 2013.
32. Nixon, K. C. 1999. The Parsimony Ratchet, a new method for rapid parsimony analysis. Cladistics 15:407-414.
33. Nog ueira, R. M., L. Monteiro, A. L. Peracchi, and A. F. B. de Araújo. 2005. Ecomorphological analysis of the masticatory apparatus in the seed-eating bats, genus Chiroderma (Chiroptera: Phyllostomidae). Journal of Zoology (London) 266:355-364.
34. NOM-059-2010. 2010. NORMA Oficial Mexicana NOM-059-SEMARNAT-2010, Protección ambiental-Especies nativas de México de flora y fauna silvestres-Categorías de riesgo y especificaciones para su inclusión, exclusión o cambio-Lista de especies en riesgo. Diario Oficial de la Federación, México, México City, Distrito Federal, 78.
35. Orr, M. R., and T. B. Smith. 1998. Ecology and speciation. Trends in Ecology and Evolution 13:502-506.
36. Ortega, J., and H. T. Arita. 1998. Neotropical-Nearctic limits in Middle America as determined by the distributions of bats. Journal of Mammalogy 79:772-783.
37. Petit, R. J., et al. 2003. Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300:1563-1565.
38. Piagg io, A. J., E. W. Valdez, M. A. Bog an, and G. S. Spicer. 2002. Systematics of Myotis occultus (Chiroptera: Vespertilionidae) inferred from sequences of two mitochondrial genes. Journal of Mammalogy 83:386-395.
39. Posada, D. 2008. Jmodeltest: phylogenetic model averaging. Molecular Biology and Evolution 25:1253-1256.
40. Rambaut, A., M. A. Suchard, D. Xie, and A. J. Drummo nd. 2014. Tracer v1.6. http://beast.bio.ed.ac.uk/Tracer. Accessed 1 October 2015.
41. Rodriguez, R. M., and L. K. Amm erman. 2004. Mitochondrial DNA divergence does not reflect morphological difference between Myotis californicus and Myotis ciliolabrum. Journal of Mammalogy 85:842-851.
42. Rohlf, F. J. 2008. tpsDig software, ver. 2.12. http://life.bio.sunysb. edu/morph/. Accessed 2 October 2014.
43. Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
44. Ruedi, M., and F. Mayer. 2001. Molecular systematic of bats of the genus Myotis (Vespertilionidae) suggests deterministic ecomorphological convergences. Molecular Phylogenetics and Evolution 21:436-448.
45. Ruedi, M., et al. 2013. Molecular phylogenetic reconstructions identify East Asia as the cradle for the evolution of the cosmopolitan genus Myotis (Mammalia, Chiroptera). Molecular Phylogenetics and Evolution 69:437-449.
46. Sikes, R. S., W. L. Gannon, and the Animal Care and Use Comm itt ee of the American Society of Mamm alog ists. 2011. Guidelines of the American Society of Mammalogists for the use of wild mammals in research. Journal of Mammalogy 92:235-253.
47. Simmons, N. B. 2005. Order Chiroptera. Pp. 312-529 in Mammal species of the world: a taxonomic and geographic reference (D. E. Wilson and D. M. Reeder, eds.). Johns Hopkins University Press, Baltimore, Maryland.
48. Sota, T., and M. Sasabe. 2006. Utility of nuclear allele networks for the analysis of closely related species in the genus Carabus, subgenus Ohomopterus. Systematic Biology 55:329-344.
49. Stadelmann, B., L. G. Herrera, J. Arroyo-Cabrales, and J. J. Flores-Martínez. 2004a. Molecular systematics of the fishing bat Myotis (Pizonyx) vivesi. Journal of Mammalogy 85:133-139.
50. Stadelmann, B., D. S. Jacobs, C. Schoeman, and M. Ruedi. 2004b. Phylogeny of African Myotis (Chiroptera, Vespertilionidae) inferred from cytochrome b sequences. Acta Chiropterologica 6:177-192.
51. Stadelmann, B., L.-K. Lin, T. H. Kunz, and M. Ruedi. 2007. Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes. Molecular Phylogenetics and Evolution 43:32-48.
52. StatSoft Inc. 2011. STATISTICA (data analysis software system), version 10. http://www.statsoft.com/Products/STATISTICAFeatures/Version-10. Accessed 26 August 2015.
53. Stephens, M., and P. Donnelly. 2003. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. American Journal of Human Genetics 73:1162-1169.
54. Stephens, M., N. Smith, and P. Donnelly. 2001. A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics 68:978-989.
55. Swartz, S. M., P. Freeman, and E. F. Sto ckwell. 2003. Ecomorphology of bats: comparative and experimental approaches relating structural design to ecology. Pp. 257-300 in Bat ecology (T. H. Kunz and B. Fenton, eds.). The University of Chicago Press, Chicago, Illinois.
56. Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28:2731-2739.
57. Webb, T., III, and P. J. Bartlein. 1992. Global changes during the last 3 million years: climatic controls and biotic responses. Annual Review of Ecology and Systematics 23:141-73.
58. Zink, R. M. 2002. A new perspective on the evolutionary history of Darwin's finches. The Auk 119:864-871.
59. Zwickl, D. J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin, Austin, Texas.