EST and microarray analysis of tobacco BY-2 cells

Biotechnology in Agriculture and Forestry

Volumn 58, Issue , 2006, Pages 293-311

  Matsuoka, K ^b   Galis, I ^a  

^a RIKEN Center for Sustainable Resource Science   (Japan)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84983058824     PISSN: 0934943X     EISSN: None     Source Type: Book Series    
DOI: 10.1007/3-540-32674-X_19     Document Type: Article

References (38)

1. Blokhina O, Virolainen E, Fagerstedt KV (2003) Antioxidants, oxidative damage and oxygen deprivation stress: a review. Ann Bot 91:179–194.
2. Creelman RA, Mullet JE (1997) Biosynthesis and action of jasmonates in plants. Annu Rev Plant Physiol Plant Molec Biol 48:355–381.
3. de Bruxelles GL, Roberts MR (2001) Signals regulating multiple responses to wounding and herbivores. Crit Rev Plant Sci 20:487–521.
4. Devoto A, Turner JG (2005) Jasmonate-regulated Arabidopsis stress signalling network. Physiol Plant 123:161–172.
5. Endt DV, Kijne JW, Memelink J (2002) Transcription factors controlling plant secondary metabolism: what regulates the regulators? Phytochemistry 61:107–114.
6. Galis I, Simek P, Narisawa T, Sasaki M, Horiguchi T, Fukuda H, Matsuoka K (2006) A novel R2R3 MYB transcription factor NtMYBJS1 is a methyl jasmonate-dependent regulator of phenylpropanoid-conjugate biosynthesis in tobacco. Plant J, 46:573–592.
7. Goossens A, Hakkinen ST, Laakso I, Seppanen-Laakso T, Biondi S, De Sutter V, Lammertyn F, Nuutila AM, Soderlund H, Zabeau M, Inze D, Oksman-Caldentey KM (2003) A functional genomics approach toward the understanding of secondary metabolism in plant cells. Proc Natl Acad Sci USA 100:8595–8600.
8. Hakkinen ST, Oksman-Caldentey KM (2004) Regulation of secondary metabolism in tobacco cell cultures. In: Nagata T, Hasezawa S, Inze D (eds) Tobacco BY-2 cells. Biotechnology in Agriculture and Forestry, vol. 53. Springer, Berlin Heidelberg New York, pp 231–249.
9. Hakkinen ST, Rischer H, Laakso I, Maaheimo H, Seppanen-Laakso T, Oksman-Cladentey KM (2004) Anatalline and other methyl jasmonate-inducible nicotine alkaloids from Nicotiana tabacum cv. BY-2 cell cultures. Planta Med 70:936–941.
10. Henstrand JM, McCue KF, Brink K, Handa AK, Herrmann KM, Conn EE (1992) Light and fungal elicitor induce 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase messenger-RNA in suspension cultured-cells of parsley (Petroselinum-crispum L). Plant Physiol 98:761–763.
11. Hudgins JW, Franceschi VR (2004) Methyl jasmonate-induced ethylene production is responsible for conifer phloemdefense responses and reprogramming of stemcambial zone for traumatic resin duct formation. Plant Physiol 135:2134–2149.
12. Jin HL, Martin C (1999) Multifunctionality and diversity within the plant MYB-gene family. Plant Molec Biol 41:577–585.
13. Jones JD, Henstrand JM, Handa AK, Herrmann KM, Weller SC (1995) Impaired wound induction of 3-deoxy-d-arabino-heptulosonate-7-phosphate (DAHP) synthase and altered stem development in transgenic potato plants expressing a DAHP synthase antisense construct. Plant Physiol 108:1413–1421.
14. Keinanen M, Oldham NJ, Baldwin IT (2001) Rapid HPLC screening of jasmonate-induced increases in tobacco alkaloids, phenolics, and diterpene glycosides in Nicotiana attenuata. J Agric Food Chem 49:3553–3558.
15. Keith B, Dong XN, Ausubel FM, Fink GR (1991) Differential induction of 3-deoxy-d-arabinoheptulosonate 7-phosphate synthase genes in Arabidopsis-thaliana by wounding and pathogenic attack. Proc Natl Acad Sci USA 88:8821–8825.
16. Kim YS, Choi D, Lee MM, Lee SH, Kim WT (1998) Biotic and abiotic stress-related expression of 1-aminocyclopropane-1-carboxylate oxidase gene family in Nicotiana glutinosa L. Plant Cell Physiol 39:565–573.
17. Kubigsteltig, II, Weiler EW (2003) Arabidopsis mutants affected in the transcriptional control of allene oxide synthase, the enzyme catalyzing the entrance step in octadecanoid biosynthesis. Planta 217:748–757.
18. Kunkel BN, Brooks DM (2002) Cross talk between signaling pathways in pathogen defense. Curr Opin Plant Biol 5:325–331.
19. Matsuoka K (2004) Protein sorting and protein modification along the secretory pathway in BY-2 cells. In: Nagata T, Hasezawa S, Inze D (eds) Tobacco BY-2 cells. Biotechnology in Agriculture and Forestry, vol. 53. Springer, Berlin Heidelberg New York, pp 283–301.
20. Matsuoka K, Demura T, Galis I, Horiguchi T, Sasaki M, Tashiro G, Fukuda H (2004) A comprehensive gene expression analysis toward the understanding of growth and differentiation of tobacco BY-2 cells. Plant Cell Physiol 45:1280–1289.
21. Nagata T, Hasezawa S, Inze D (eds) (2004) Tobacco BY-2 cells. Biotechnology in Agriculture and Forestry, vol. 53. Springer, Berlin Heidelberg New York.
22. Oksman-Caldentey KM, Inze D (2004) Plant cell factories in the post-genomic era: new ways to produce designer secondary metabolites. Trends Plant Sci 9:433–440.
23. Oksman-Caldentey KM, Saito K (2005) Integrating genomics and metabolomics for engineering plant metabolic pathways. Curr Opin Biotechnol 16:174–179.
24. Ren CM, Pan JW, Peng W, Genschik P, Hobbie L, Hellmann H, Estelle M, Gao B, Peng JR, Sun CQ, Xie DX (2005) Point mutations in Arabidopsis Cullin1 reveal its essential role in jasmonate response. Plant J 42:514–524.
25. Rogers Y-H, Venter CJ (2005) Genomics: massively parallel sequencing. Nature 437:326–327.
26. Sakai A, Miyazawa Y, Kuroiwa T (2004) Studies on dynamic changes of organelles using tobacco BY-2 as the model plant cell line. In: Nagata T, Hasezawa S, Inze D (eds) Tobacco BY-2 cells. Biotechnology in Agriculture and Forestry, vol. 53. Springer, Berlin Heidelberg New York, pp 192–213.
27. Salzman RA, Brady JA, Finlayson SA, Buchanan CD, Summer EJ, Sun F, Klein PE, Klein RR, Pratt LH, Cordonnier-Pratt MM, Mullet JE (2005) Transcriptional profiling of sorghum induced by methyl jasmonate, salicylic acid, and aminocyclopropane carboxylic acid reveals cooperative regulation and novel gene responses. Plant Physiol 138:352–368.
28. Strack D (1997) Phenolic metabolism. In: Dey PM, Harborne JB (eds) Plant biochemistry. Academic Press, San Diego, pp 387–416.
29. Stracke R, Werber M, Weisshaar B (2001) The R2R3-MYB gene family in Arabidopsis thaliana. Curr Opin Plant Biol 4:447–456.
30. Suzuki H, Reddy MSS, Naoumkina M, Aziz N, May GD, Huhman DV, Sumner LW, Blount JW, Mendes P, Dixon RA (2005) Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Planta 220:696–707.
31. Suzuki K, Fukuda Y, Shinshi H (1995) Studies onelicitor-signal transductionleading todifferential expression of defense genes in cultured tobacco cells. Plant Cell Physiol 36:281–289.
32. Swiatek A, Lenjou M, Van Bockstaele D, Inze D, Van Onckelen H (2002) Differential effect of jasmonic acid and abscisic acid on cell cycle progression in tobacco BY-2 cells. Plant Physiol 128:201–211.
33. Swiatek A, Van Dongen W, Esmans EL, Van Onckelen H (2004) Metabolic fate of jasmonates in tobacco bright yellow-2 cells. Plant Physiol 135:161–172.
34. Takeda S, Sugimoto K, Otsuki H, Hirochika H (1998) Transcriptional activation of the tobacco retrotransposon Tto1 by wounding and methyl jasmonate. Plant Molec Biol 36:365–376.
35. Takeda S, Sugimoto K, Otsuki H, Hirochika H (1999) A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors. Plant J 18:383–393.
36. Xie DX, Feys BF, James S, Nieto-Rostro M, Turner JG (1998) COI1: an Arabidopsis gene required for jasmonate-regulated defense and fertility. Science 280:1091–1094.
37. Xu BF, Sheehan MJ, Timko MP (2004) Differential induction of ornithine decarboxylase (ODC) gene family members in transgenic tobacco (Nicotiana tabacum L. cv. Bright Yellow 2) cell suspensions by methyl-jasmonate treatment. Plant Growth Regul 44:101–116.
38. Xu LH, Liu FQ, Lechner E, Genschik P, Crosby WL, Ma H, Peng W, Huang DF, Xie DX (2002) The SCFCOl1 ubiquitin-ligase complexes are required for jasmonate response in Arabidopsis. Plant Cell 14:1919–1935.