메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Transcriptome landscape of Synechococcus elongatus PCC 7942 for nitrogen starvation responses using RNA-seq

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CARBON; NITROGEN;

EID: 84982706240     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep30584     Document Type: Article
Times cited : (36)

References (45)
  • 1
    • 84864236979 scopus 로고    scopus 로고
    • 2 bio-mitigation by genetic engineering of cyanobacteria
    • 2 bio-mitigation by genetic engineering of cyanobacteria. Energy Environ Sci 5, 8318-8327 (2012).
    • (2012) Energy Environ Sci , vol.5 , pp. 8318-8327
    • Chen, P.H.1
  • 3
    • 84943604629 scopus 로고    scopus 로고
    • Systems strategies for developing industrial microbial strains
    • Lee, S. Y. & Kim, H. U. Systems strategies for developing industrial microbial strains. Nat Biotechnol 33, 1061-1072 (2015).
    • (2015) Nat Biotechnol , vol.33 , pp. 1061-1072
    • Lee, S.Y.1    Kim, H.U.2
  • 4
    • 0021813652 scopus 로고
    • Efects of environmental factors on toxicity of a cyanobacterium (Microcystis aeruginosa) under culture conditions
    • Watanabe, M. F. & Oishi, S. Efects of environmental factors on toxicity of a cyanobacterium (Microcystis aeruginosa) under culture conditions. Appl Environ Microbiol 49, 1342-1344 (1985).
    • (1985) Appl Environ Microbiol , vol.49 , pp. 1342-1344
    • Watanabe, M.F.1    Oishi, S.2
  • 6
    • 81455154482 scopus 로고    scopus 로고
    • Production of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) by Ralstonia eutropha in high cell density palm oil fermentations
    • Riedel, S. L. et al. Production of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) by Ralstonia eutropha in high cell density palm oil fermentations. Biotechnol Bioeng 109, 74-83 (2012).
    • (2012) Biotechnol Bioeng , vol.109 , pp. 74-83
    • Riedel, S.L.1
  • 7
    • 84867703155 scopus 로고    scopus 로고
    • Advanced bacterial polyhydroxyalkanoates: Towards a versatile and sustainable platform for unnatural tailor-made polyesters
    • Park, S. J., Kim, T. W., Kim, M. K., Lee, S. Y. & Lim, S. C. Advanced bacterial polyhydroxyalkanoates: towards a versatile and sustainable platform for unnatural tailor-made polyesters. Biotechnol Adv 30, 1196-1206 (2012).
    • (2012) Biotechnol Adv , vol.30 , pp. 1196-1206
    • Park, S.J.1    Kim, T.W.2    Kim, M.K.3    Lee, S.Y.4    Lim, S.C.5
  • 8
    • 44449157244 scopus 로고    scopus 로고
    • Efciency assessment of the one-step production of astaxanthin by the microalga Haematococcus pluvialis
    • Del Rio, E., Acien, F. G., Garcia-Malea, M. C., Rivas, J., Molina-Grima, E. & Guerrero, M. G. Efciency assessment of the one-step production of astaxanthin by the microalga Haematococcus pluvialis. Biotechnol Bioeng 100, 397-402 (2008).
    • (2008) Biotechnol Bioeng , vol.100 , pp. 397-402
    • Del Rio, E.1    Acien, F.G.2    Garcia-Malea, M.C.3    Rivas, J.4    Molina-Grima, E.5    Guerrero, M.G.6
  • 9
    • 33947225848 scopus 로고    scopus 로고
    • Complementary limiting factors of astaxanthin synthesis during photoautotrophic induction of Haematococcus pluvialis: C/N ratio and light intensity
    • Kang, C. D., Lee, J. S., Park, T. H. & Sim, S. J. Complementary limiting factors of astaxanthin synthesis during photoautotrophic induction of Haematococcus pluvialis: C/N ratio and light intensity. Appl Microbiol Biotechnol 74, 987-994 (2007).
    • (2007) Appl Microbiol Biotechnol , vol.74 , pp. 987-994
    • Kang, C.D.1    Lee, J.S.2    Park, T.H.3    Sim, S.J.4
  • 10
    • 84879142653 scopus 로고    scopus 로고
    • High-level production of amorpha-4, 11-diene, a precursor of the antimalarial agent artemisinin, in Escherichia coli
    • Tsuruta, H. et al. High-level production of amorpha-4, 11-diene, a precursor of the antimalarial agent artemisinin, in Escherichia coli. PLoS One 4, e4489 (2009).
    • (2009) PLoS One , vol.4 , pp. e4489
    • Tsuruta, H.1
  • 11
    • 24944447884 scopus 로고    scopus 로고
    • DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum
    • Silberbach, M. et al. DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum. J Biotechnol 119, 357-367 (2005).
    • (2005) J Biotechnol , vol.119 , pp. 357-367
    • Silberbach, M.1
  • 12
    • 84903188814 scopus 로고    scopus 로고
    • Nitrogen stress response and stringent response are coupled in Escherichia coli
    • Brown, D. R., Barton, G., Pan, Z., Buck, M. & Wigneshweraraj, S. Nitrogen stress response and stringent response are coupled in Escherichia coli. Nat Commun 5, 4115 (2014).
    • (2014) Nat Commun , vol.5 , pp. 4115
    • Brown, D.R.1    Barton, G.2    Pan, Z.3    Buck, M.4    Wigneshweraraj, S.5
  • 13
    • 84899968949 scopus 로고    scopus 로고
    • Metabolic and transcriptomic response of the wine yeast Saccharomyces cerevisiae strain EC1118 afer an oxygen impulse under carbon-sufcient, nitrogen-limited fermentative conditions
    • Orellana, M., Aceituno, F. F., Slater, A. W., Almonacid, L. I., Melo, F. & Agosin, E. Metabolic and transcriptomic response of the wine yeast Saccharomyces cerevisiae strain EC1118 afer an oxygen impulse under carbon-sufcient, nitrogen-limited fermentative conditions. FEMS Yeast Res 14, 412-424 (2014).
    • (2014) FEMS Yeast Res , vol.14 , pp. 412-424
    • Orellana, M.1    Aceituno, F.F.2    Slater, A.W.3    Almonacid, L.I.4    Melo, F.5    Agosin, E.6
  • 14
    • 0026703943 scopus 로고
    • Chlorosis induced by nutrient deprivation in Synechococcus sp. Strain PCC 7942: Not all bleaching is the same
    • Collier, J. L. & Grossman, A. R. Chlorosis induced by nutrient deprivation in Synechococcus sp. strain PCC 7942: not all bleaching is the same. J Bacteriol 174, 4718-4726 (1992).
    • (1992) J Bacteriol , vol.174 , pp. 4718-4726
    • Collier, J.L.1    Grossman, A.R.2
  • 15
    • 0034973673 scopus 로고    scopus 로고
    • Nitrogen starvation-induced chlorosis in Synechococcus PCC 7942. Low-level photosynthesis as a mechanism of long-term survival
    • Sauer, J., Schreiber, U., Schmid, R., Volker, U. & Forchhammer, K. Nitrogen starvation-induced chlorosis in Synechococcus PCC 7942. Low-level photosynthesis as a mechanism of long-term survival. Plant Physiol 126, 233-243 (2001).
    • (2001) Plant Physiol , vol.126 , pp. 233-243
    • Sauer, J.1    Schreiber, U.2    Schmid, R.3    Volker, U.4    Forchhammer, K.5
  • 16
    • 0031691486 scopus 로고    scopus 로고
    • Nitrogen-starvation-induced chlorosis in Synechococcus PCC 7942: Adaptation to long-term survival
    • Görl, M., Sauer, J., Baier, T. & Forchhammer, K. Nitrogen-starvation-induced chlorosis in Synechococcus PCC 7942: adaptation to long-term survival. Microbiology 144, 2449-2458 (1998).
    • (1998) Microbiology , vol.144 , pp. 2449-2458
    • Görl, M.1    Sauer, J.2    Baier, T.3    Forchhammer, K.4
  • 17
    • 0028204187 scopus 로고
    • A small polypeptide triggers complete degradation of light-harvesting phycobiliproteins in nutrient-deprived cyanobacteria
    • Collier, J. L. & Grossman, A. R. A small polypeptide triggers complete degradation of light-harvesting phycobiliproteins in nutrient-deprived cyanobacteria. EMBO J 13, 1039-1047 (1994).
    • (1994) EMBO J , vol.13 , pp. 1039-1047
    • Collier, J.L.1    Grossman, A.R.2
  • 18
    • 0035726122 scopus 로고    scopus 로고
    • Convergence of two global transcriptional regulators on nitrogen induction of the stress-acclimation gene nblA in the cyanobacterium Synechococcus sp. PCC 7942
    • Luque, I., Zabulon, G., Contreras, A. & Houmard, J. Convergence of two global transcriptional regulators on nitrogen induction of the stress-acclimation gene nblA in the cyanobacterium Synechococcus sp. PCC 7942. Mol Microbiol 41, 937-947 (2001).
    • (2001) Mol Microbiol , vol.41 , pp. 937-947
    • Luque, I.1    Zabulon, G.2    Contreras, A.3    Houmard, J.4
  • 19
    • 0032888698 scopus 로고    scopus 로고
    • Nitrogen starvation in synechococcus PCC 7942: Involvement of glutamine synthetase and NtcA in phycobiliprotein degradation and survival
    • Sauer, J., Gorl, M. & Forchhammer, K. Nitrogen starvation in synechococcus PCC 7942: involvement of glutamine synthetase and NtcA in phycobiliprotein degradation and survival. Arch Microbiol 172, 247-255 (1999).
    • (1999) Arch Microbiol , vol.172 , pp. 247-255
    • Sauer, J.1    Gorl, M.2    Forchhammer, K.3
  • 20
    • 84902136859 scopus 로고    scopus 로고
    • PipX, the coactivator of NtcA, is a global regulator in cyanobacteria
    • Espinosa, J. et al. PipX, the coactivator of NtcA, is a global regulator in cyanobacteria. Proc Natl Acad Sci USA 111, E2423-E2430 (2014).
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. E2423-E2430
    • Espinosa, J.1
  • 21
    • 33748509737 scopus 로고    scopus 로고
    • Interaction network in cyanobacterial nitrogen regulation: PipX, a protein that interacts in a 2-oxoglutarate dependent manner with PII and NtcA
    • Espinosa, J., Forchhammer, K., Burillo, S. & Contreras, A. Interaction network in cyanobacterial nitrogen regulation: PipX, a protein that interacts in a 2-oxoglutarate dependent manner with PII and NtcA. Mol Microbiol 61, 457-469 (2006).
    • (2006) Mol Microbiol , vol.61 , pp. 457-469
    • Espinosa, J.1    Forchhammer, K.2    Burillo, S.3    Contreras, A.4
  • 22
    • 84861945304 scopus 로고    scopus 로고
    • Time-series resolution of gradual nitrogen starvation and its impact on photosynthesis in the cyanobacterium Synechocystis PCC 6803
    • Krasikov, V., Aguirre von Wobeser, E., Dekker, H. L., Huisman, J. & Matthijs, H. C. Time-series resolution of gradual nitrogen starvation and its impact on photosynthesis in the cyanobacterium Synechocystis PCC 6803. Physiol Plant 145, 426-439 (2012).
    • (2012) Physiol Plant , vol.145 , pp. 426-439
    • Krasikov, V.1    Aguirre Von Wobeser, E.2    Dekker, H.L.3    Huisman, J.4    Matthijs, H.C.5
  • 23
    • 84927126431 scopus 로고    scopus 로고
    • Phosphoproteome of the cyanobacterium Synechocystis sp. PCC 6803 and its dynamics during nitrogen starvation
    • Spät, P., Macek, B. & Forchhammer, K. Phosphoproteome of the cyanobacterium Synechocystis sp. PCC 6803 and its dynamics during nitrogen starvation. Front Microbiol 6, 248 (2015).
    • (2015) Front Microbiol , vol.6 , pp. 248
    • Spät, P.1    MacEk, B.2    Forchhammer, K.3
  • 24
    • 80955173627 scopus 로고    scopus 로고
    • A high resolution map of a cyanobacterial transcriptome
    • Vijayan, V., Jain, I. H. & O'Shea, E. K. A high resolution map of a cyanobacterial transcriptome. Genome Biol 12, R47 (2011).
    • (2011) Genome Biol , vol.12 , pp. R47
    • Vijayan, V.1    Jain, I.H.2    O'Shea, E.K.3
  • 26
    • 0036229440 scopus 로고    scopus 로고
    • Role of rubrerythrin in the oxidative stress response of Porphyromonas gingivalis
    • Sztukowska, M., Bugno, M., Potempa, J., Travis, J. & Kurtz, D. M. Jr. Role of rubrerythrin in the oxidative stress response of Porphyromonas gingivalis. Mol Microbiol 44, 479-488 (2002).
    • (2002) Mol Microbiol , vol.44 , pp. 479-488
    • Sztukowska, M.1    Bugno, M.2    Potempa, J.3    Travis, J.4    Kurtz, D.M.5
  • 28
    • 33846606811 scopus 로고    scopus 로고
    • Involvement of the cynABDS operon and the CO2-concentrating mechanism in the light-dependent transport and metabolism of cyanate by cyanobacteria
    • Espie, G. S., Jalali, F., Tong, T., Zacal, N. J. & So, A. K. Involvement of the cynABDS operon and the CO2-concentrating mechanism in the light-dependent transport and metabolism of cyanate by cyanobacteria. J Bacteriol 189, 1013-1024 (2007).
    • (2007) J Bacteriol , vol.189 , pp. 1013-1024
    • Espie, G.S.1    Jalali, F.2    Tong, T.3    Zacal, N.J.4    So, A.K.5
  • 29
    • 84925372658 scopus 로고    scopus 로고
    • Installing extra bicarbonate transporters in the cyanobacterium Synechocystis sp. PCC6803 enhances biomass production
    • Kamennaya, N. A. et al. Installing extra bicarbonate transporters in the cyanobacterium Synechocystis sp. PCC6803 enhances biomass production. Metab Eng 29, 76-85 (2015).
    • (2015) Metab Eng , vol.29 , pp. 76-85
    • Kamennaya, N.A.1
  • 30
    • 34547805062 scopus 로고    scopus 로고
    • Cyanobacterial NADPH dehydrogenase complexes
    • Ogawa, T. & Mi, H. Cyanobacterial NADPH dehydrogenase complexes. Photosynth Res 93, 69-77 (2007).
    • (2007) Photosynth Res , vol.93 , pp. 69-77
    • Ogawa, T.1    Mi, H.2
  • 31
    • 35748946615 scopus 로고    scopus 로고
    • Analysis of Carboxysomes from Synechococcus PCC7942 Reveals Multiple Rubisco Complexes with Carboxysomal Proteins CcmM and CcaA
    • Long, B. M., Badger, M. R., Whitney, S. M. & Price, G. D. Analysis of Carboxysomes from Synechococcus PCC7942 Reveals Multiple Rubisco Complexes with Carboxysomal Proteins CcmM and CcaA. J Biol Chem 282, 29323-29335 (2007).
    • (2007) J Biol Chem , vol.282 , pp. 29323-29335
    • Long, B.M.1    Badger, M.R.2    Whitney, S.M.3    Price, G.D.4
  • 32
    • 0032518315 scopus 로고    scopus 로고
    • Metabolic compartmentation of plastid prenyllipid biosynthesis
    • Keller, Y., Bouvier, F., d'Harlingue, A. & Camara, B. Metabolic compartmentation of plastid prenyllipid biosynthesis. Eur J Biochem 251, 413-417 (1998).
    • (1998) Eur J Biochem , vol.251 , pp. 413-417
    • Keller, Y.1    Bouvier, F.2    D'Harlingue, A.3    Camara, B.4
  • 34
    • 2642530192 scopus 로고    scopus 로고
    • Global carbon/nitrogen control by PII signal transduction in cyanobacteria: From signals to targets
    • Forchhammer, K. Global carbon/nitrogen control by PII signal transduction in cyanobacteria: from signals to targets. FEMS Microbiol Rev 28, 319-333 (2004).
    • (2004) FEMS Microbiol Rev , vol.28 , pp. 319-333
    • Forchhammer, K.1
  • 35
    • 0028011762 scopus 로고
    • The PII protein in the cyanobacterium Synechococcus sp. Strain PCC 7942 is modifed by serine phosphorylation and signals the cellular N-status
    • Forchhammer, K. & Tandeau de Marsac, N. The PII protein in the cyanobacterium Synechococcus sp. strain PCC 7942 is modifed by serine phosphorylation and signals the cellular N-status. J Bacteriol 176, 84-91 (1994).
    • (1994) J Bacteriol , vol.176 , pp. 84-91
    • Forchhammer, K.1    Tandeau De Marsac, N.2
  • 36
    • 84892786521 scopus 로고    scopus 로고
    • Rre37 stimulates accumulation of 2-oxoglutarate and glycogen under nitrogen starvation in Synechocystis sp. PCC 6803
    • Joseph, A. et al. Rre37 stimulates accumulation of 2-oxoglutarate and glycogen under nitrogen starvation in Synechocystis sp. PCC 6803. FEBS Lett 588, 466-471 (2014).
    • (2014) FEBS Lett , vol.588 , pp. 466-471
    • Joseph, A.1
  • 37
    • 0033429695 scopus 로고    scopus 로고
    • Protein PII regulates both inorganic carbon and nitrate uptake and is modifed by a redox signal in Synechocystis PCC 6803
    • Hisbergues, M., Jeanjean, R., Joset, F., Tandeau de Marsac, N. & Bedu, S. Protein PII regulates both inorganic carbon and nitrate uptake and is modifed by a redox signal in Synechocystis PCC 6803. FEBS Lett 463, 216-220 (1999).
    • (1999) FEBS Lett , vol.463 , pp. 216-220
    • Hisbergues, M.1    Jeanjean, R.2    Joset, F.3    Tandeau De Marsac, N.4    Bedu, S.5
  • 38
    • 0345643316 scopus 로고    scopus 로고
    • The global nitrogen regulator NtcA regulates transcription of the signal transducer PII (GlnB) and infuences its phosphorylation level in response to nitrogen and carbon supplies in the Cyanobacterium Synechococcus sp. Strain PCC 7942
    • Lee, H. M., Vazquez-Bermudez, M. F. & de Marsac, N. T. The global nitrogen regulator NtcA regulates transcription of the signal transducer PII (GlnB) and infuences its phosphorylation level in response to nitrogen and carbon supplies in the Cyanobacterium Synechococcus sp. strain PCC 7942. J Bacteriol 181, 2697-2702 (1999).
    • (1999) J Bacteriol , vol.181 , pp. 2697-2702
    • Lee, H.M.1    Vazquez-Bermudez, M.F.2    De Marsac, N.T.3
  • 39
    • 0028907146 scopus 로고
    • Functional analysis of the phosphoprotein PII (glnB gene product) in the cyanobacterium Synechococcus sp. Strain PCC 7942
    • Forchhammer, K. & Tandeau de Marsac, N. Functional analysis of the phosphoprotein PII (glnB gene product) in the cyanobacterium Synechococcus sp. strain PCC 7942. J Bacteriol 177, 2033-2040 (1995).
    • (1995) J Bacteriol , vol.177 , pp. 2033-2040
    • Forchhammer, K.1    Tandeau De Marsac, N.2
  • 40
    • 79953704007 scopus 로고    scopus 로고
    • Metabolic and transcriptomic phenotyping of inorganic carbon acclimation in the Cyanobacterium Synechococcus elongatus PCC 7942
    • Schwarz, D. et al. Metabolic and transcriptomic phenotyping of inorganic carbon acclimation in the Cyanobacterium Synechococcus elongatus PCC 7942. Plant Physiol 155, 1640-1655 (2011).
    • (2011) Plant Physiol , vol.155 , pp. 1640-1655
    • Schwarz, D.1
  • 41
    • 84864082503 scopus 로고    scopus 로고
    • Regulation of the cyanobacterial CO2-concentrating mechanism involves internal sensing of NADP+ and alpha-ketogutarate levels by transcription factor CcmR
    • Daley, S. M., Kappell, A. D., Carrick, M. J. & Burnap, R. L. Regulation of the cyanobacterial CO2-concentrating mechanism involves internal sensing of NADP+ and alpha-ketogutarate levels by transcription factor CcmR. PLoS One 7, e41286 (2012).
    • (2012) PLoS One , vol.7 , pp. e41286
    • Daley, S.M.1    Kappell, A.D.2    Carrick, M.J.3    Burnap, R.L.4
  • 42
    • 40549142092 scopus 로고    scopus 로고
    • Mechanism of low CO2-induced activation of the cmp bicarbonate transporter operon by a LysR family protein in the cyanobacterium Synechococcus elongatus strain PCC 7942
    • Nishimura, T., Takahashi, Y., Yamaguchi, O., Suzuki, H., Maeda, S. & Omata, T. Mechanism of low CO2-induced activation of the cmp bicarbonate transporter operon by a LysR family protein in the cyanobacterium Synechococcus elongatus strain PCC 7942. Mol Microbiol 68, 98-109 (2008).
    • (2008) Mol Microbiol , vol.68 , pp. 98-109
    • Nishimura, T.1    Takahashi, Y.2    Yamaguchi, O.3    Suzuki, H.4    Maeda, S.5    Omata, T.6
  • 43
    • 83655163675 scopus 로고    scopus 로고
    • Deciphering the transcriptional regulatory logic of amino acid metabolism
    • Cho, B. K., Federowicz, S., Park, Y. S., Zengler, K. & Palsson, B. O. Deciphering the transcriptional regulatory logic of amino acid metabolism. Nat Chem Biol 8, 65-71 (2012).
    • (2012) Nat Chem Biol , vol.8 , pp. 65-71
    • Cho, B.K.1    Federowicz, S.2    Park, Y.S.3    Zengler, K.4    Palsson, B.O.5
  • 44
    • 33748360105 scopus 로고    scopus 로고
    • The cyanobacterial genome core and the origin of photosynthesis
    • Mulkidjanian, A. Y. et al. The cyanobacterial genome core and the origin of photosynthesis. Proc Natl Acad Sci USA 103, 13126-13131 (2006).
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 13126-13131
    • Mulkidjanian, A.Y.1
  • 45
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: Fnd statistically overrepresented Gene Ontologies within a group of genes
    • Beissbarth, T. & Speed, T. P. GOstat: fnd statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 20, 1464-1465 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.