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Volumn 17, Issue 10, 2016, Pages 1216-1225

Plasma cell differentiation is coupled to division-dependent DNA hypomethylation and gene regulation

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; DNA; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; MESSENGER RNA; ORGANIC CATION TRANSPORTER 2; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP 1; TRANSCRIPTION FACTOR IRF; UNCLASSIFIED DRUG; INTERFERON REGULATORY FACTOR; OCTAMER TRANSCRIPTION FACTOR 2;

EID: 84981205620     PISSN: 15292908     EISSN: 15292916     Source Type: Journal    
DOI: 10.1038/ni.3519     Document Type: Article
Times cited : (110)

References (66)
  • 1
    • 20944438218 scopus 로고    scopus 로고
    • B-cell kinetics in humans: Rapid turnover of peripheral blood memory cells
    • Macallan, D.C., et al. B-cell kinetics in humans: rapid turnover of peripheral blood memory cells. Blood 105, 3633-3640 (2005
    • (2005) Blood , vol.105 , pp. 3633-3640
    • Macallan, D.C.1
  • 2
    • 84878315605 scopus 로고    scopus 로고
    • Global regulation of promoter melting in naive lymphocytes
    • Kouzine, F., et al. Global regulation of promoter melting in naive lymphocytes. Cell 153, 988-999 (2013
    • (2013) Cell , vol.153 , pp. 988-999
    • Kouzine, F.1
  • 4
    • 0030037519 scopus 로고    scopus 로고
    • B cell differentiation and isotype switching is related to division cycle number
    • Hodgkin, P.D., Lee, J.H., & Lyons, A.B. B cell differentiation and isotype switching is related to division cycle number. J. Exp. Med. 184, 277-281 (1996
    • (1996) J. Exp. Med , vol.184 , pp. 277-281
    • Hodgkin, P.D.1    Lee, J.H.2    Lyons, A.B.3
  • 5
    • 0347756722 scopus 로고    scopus 로고
    • Evidence from the generation of immunoglobulin G-secreting cells that stochastic mechanisms regulate lymphocyte differentiation
    • Hasbold, J., Corcoran, L.M., Tarlinton, D.M., Tangye, S.G., & Hodgkin, P.D. Evidence from the generation of immunoglobulin G-secreting cells that stochastic mechanisms regulate lymphocyte differentiation. Nat. Immunol. 5, 55-63 (2004
    • (2004) Nat. Immunol , vol.5 , pp. 55-63
    • Hasbold, J.1    Corcoran, L.M.2    Tarlinton, D.M.3    Tangye, S.G.4    Hodgkin, P.D.5
  • 7
    • 84856072934 scopus 로고    scopus 로고
    • Activation-induced B cell fates are selected by intracellular stochastic competition
    • Duffy, K.R., et al. Activation-induced B cell fates are selected by intracellular stochastic competition. Science 335, 338-341 (2012
    • (2012) Science , vol.335 , pp. 338-341
    • Duffy, K.R.1
  • 8
    • 84922949971 scopus 로고    scopus 로고
    • Humoral immunity Apoptosis and antigen affinity limit effector cell differentiation of a single naïve B cell
    • Taylor, J.J., Pape, K.A., Steach, H.R., & Jenkins, M.K. Humoral immunity. Apoptosis and antigen affinity limit effector cell differentiation of a single naïve B cell. Science 347, 784-787 (2015
    • (2015) Science , vol.347 , pp. 784-787
    • Taylor, J.J.1    Pape, K.A.2    Steach, H.R.3    Jenkins, M.K.4
  • 9
    • 0035839057 scopus 로고    scopus 로고
    • The role of DNA methylation in mammalian epigenetics
    • Jones, P.A., & Takai, D. The role of DNA methylation in mammalian epigenetics. Science 293, 1068-1070 (2001
    • (2001) Science , vol.293 , pp. 1068-1070
    • Jones, P.A.1    Takai, D.2
  • 10
    • 2642531973 scopus 로고    scopus 로고
    • Epigenetics in human disease and prospects for epigenetic therapy
    • Egger, G., Liang, G., Aparicio, A., & Jones, P.A. Epigenetics in human disease and prospects for epigenetic therapy. Nature 429, 457-463 (2004
    • (2004) Nature , vol.429 , pp. 457-463
    • Egger, G.1    Liang, G.2    Aparicio, A.3    Jones, P.A.4
  • 11
    • 70350654370 scopus 로고    scopus 로고
    • DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction
    • Bröske, A.-M., et al. DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction. Nat. Genet. 41, 1207-1215 (2009
    • (2009) Nat. Genet , vol.41 , pp. 1207-1215
    • Bröske, A.-M.1
  • 12
    • 80053376487 scopus 로고    scopus 로고
    • DNA methyltransferase 1 and DNA methylation patterning contribute to germinal center B-cell differentiation
    • Shaknovich, R., et al. DNA methyltransferase 1 and DNA methylation patterning contribute to germinal center B-cell differentiation. Blood 118, 3559-3569 (2011
    • (2011) Blood , vol.118 , pp. 3559-3569
    • Shaknovich, R.1
  • 13
    • 84890450749 scopus 로고    scopus 로고
    • DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation
    • Lai, A.Y., et al. DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation. Genome Res. 23, 2030-2041 (2013
    • (2013) Genome Res , vol.23 , pp. 2030-2041
    • Lai, A.Y.1
  • 14
    • 84933278041 scopus 로고    scopus 로고
    • Whole-genome fingerprint of the DNA methylome during human B cell differentiation
    • Kulis, M., et al. Whole-genome fingerprint of the DNA methylome during human B cell differentiation. Nat. Genet. 47, 746-756 (2015
    • (2015) Nat. Genet , vol.47 , pp. 746-756
    • Kulis, M.1
  • 15
    • 7244231012 scopus 로고    scopus 로고
    • Plasma cell ontogeny defined by quantitative changes in blimp-1 expression
    • Kallies, A., et al. Plasma cell ontogeny defined by quantitative changes in blimp-1 expression. J. Exp. Med. 200, 967-977 (2004
    • (2004) J. Exp. Med , vol.200 , pp. 967-977
    • Kallies, A.1
  • 16
    • 84910115884 scopus 로고    scopus 로고
    • Lasting antibody responses are mediated by a combination of newly formed and established bone marrow plasma cells drawn from clonally distinct precursors
    • Chernova, I., et al. Lasting antibody responses are mediated by a combination of newly formed and established bone marrow plasma cells drawn from clonally distinct precursors. J. Immunol. 193, 4971-4979 (2014
    • (2014) J. Immunol , vol.193 , pp. 4971-4979
    • Chernova, I.1
  • 17
    • 0037818485 scopus 로고    scopus 로고
    • Gene expression profiling of plasma cells and plasmablasts: Toward a better understanding of the late stages of B-cell differentiation
    • Tarte, K., Zhan, F., De Vos, J., Klein, B., & Shaughnessy, J. Jr. Gene expression profiling of plasma cells and plasmablasts: toward a better understanding of the late stages of B-cell differentiation. Blood 102, 592-600 (2003
    • (2003) Blood , vol.102 , pp. 592-600
    • Tarte, K.1    Zhan, F.2    De Vos, J.3    Klein, B.4    Shaughnessy, J.5
  • 18
    • 27144500218 scopus 로고    scopus 로고
    • Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis
    • Meissner, A., et al. Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis. Nucleic Acids Res. 33, 5868-5877 (2005
    • (2005) Nucleic Acids Res , vol.33 , pp. 5868-5877
    • Meissner, A.1
  • 19
    • 84899843749 scopus 로고    scopus 로고
    • A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data
    • Feng, H., Conneely, K.N., & Wu, H. A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data. Nucleic Acids Res. 42, e69-e69 (2014
    • (2014) Nucleic Acids Res , vol.42 , pp. e69-e69
    • Feng, H.1    Conneely, K.N.2    Wu, H.3
  • 20
    • 84918559452 scopus 로고    scopus 로고
    • Interleukin-10-producing plasmablasts exert regulatory function in autoimmune inflammation
    • Matsumoto, M., et al. Interleukin-10-producing plasmablasts exert regulatory function in autoimmune inflammation. Immunity 18, 1040-1051 (2014
    • (2014) Immunity , vol.18 , pp. 1040-1051
    • Matsumoto, M.1
  • 21
    • 33745182931 scopus 로고    scopus 로고
    • Transcription factor IRF4 controls plasma cell differentiation and class-switch recombination
    • Klein, U., et al. Transcription factor IRF4 controls plasma cell differentiation and class-switch recombination. Nat. Immunol. 7, 773-782 (2006
    • (2006) Nat. Immunol , vol.7 , pp. 773-782
    • Klein, U.1
  • 22
    • 84878195944 scopus 로고    scopus 로고
    • Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4
    • Ochiai, K., et al Transcriptional Regulation of Germinal Center B and Plasma Cell Fates by Dynamical Control of IRF4. Immunity 38, 918-929 (2013
    • (2013) Immunity , vol.38 , pp. 918-929
    • Ochiai, K.1
  • 23
    • 84929966586 scopus 로고    scopus 로고
    • Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells
    • Shi, W., et al. Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells. Nat. Immunol. 16, 663-673 (2015
    • (2015) Nat. Immunol , vol.16 , pp. 663-673
    • Shi, W.1
  • 24
    • 23044443492 scopus 로고    scopus 로고
    • Mutations in TNFRSF13B encoding TACI are associated with common variable immunodeficiency in humans
    • Salzer, U., et al. Mutations in TNFRSF13B encoding TACI are associated with common variable immunodeficiency in humans. Nat. Genet. 37, 820-828 (2005
    • (2005) Nat. Genet , vol.37 , pp. 820-828
    • Salzer, U.1
  • 25
    • 0030825309 scopus 로고    scopus 로고
    • COBRA: A sensitive and quantitative DNA methylation assay
    • Xiong, Z., & Laird, P.W. COBRA: a sensitive and quantitative DNA methylation assay. Nucleic Acids Res. 25, 2532-2534 (1997
    • (1997) Nucleic Acids Res , vol.25 , pp. 2532-2534
    • Xiong, Z.1    Laird, P.W.2
  • 26
    • 33747133955 scopus 로고    scopus 로고
    • Graded expression of interferon regulatory factor-4 coordinates isotype switching with plasma cell differentiation
    • Sciammas, R., et al. Graded expression of interferon regulatory factor-4 coordinates isotype switching with plasma cell differentiation. Immunity 25, 225-236 (2006
    • (2006) Immunity , vol.25 , pp. 225-236
    • Sciammas, R.1
  • 27
    • 15444346834 scopus 로고    scopus 로고
    • Requirement for the transcription factor LSIRF/IRF4 for mature B and T lymphocyte function
    • Mittrücker, H.-W., et al. Requirement for the transcription factor LSIRF/IRF4 for mature B and T lymphocyte function. Science 275, 540-543 (1997
    • (1997) Science , vol.275 , pp. 540-543
    • Mittrücker, H.-W.1
  • 28
    • 0029610034 scopus 로고
    • The immunoglobulin heavy-chain matrix-Associating regions are bound by Bright: A B cell-specific trans-Activator that describes a new DNA-binding protein family
    • Herrscher, R.F., et al. The immunoglobulin heavy-chain matrix-Associating regions are bound by Bright: a B cell-specific trans-Activator that describes a new DNA-binding protein family. Genes Dev. 9, 3067-3082 (1995
    • (1995) Genes Dev , vol.9 , pp. 3067-3082
    • Herrscher, R.F.1
  • 29
    • 23444459544 scopus 로고
    • Blimp-1 a novel zinc finger-containing protein that can drive the maturation of B lymphocytes into immunoglobulin-secreting cells
    • Turner, C.A. Jr., Mack, D.H., & Davis, M.M. Blimp-1, a novel zinc finger-containing protein that can drive the maturation of B lymphocytes into immunoglobulin-secreting cells. Cell 77, 297-306 (1994
    • (1994) Cell , vol.77 , pp. 297-306
    • Turner, C.A.1    Mack, D.H.2    Davis, M.M.3
  • 30
    • 78650758676 scopus 로고    scopus 로고
    • Histone H3K27ac separates active from poised enhancers and predicts developmental state
    • Creyghton, M.P., et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 107, 21931-21936 (2010
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 21931-21936
    • Creyghton, M.P.1
  • 31
    • 84911462077 scopus 로고    scopus 로고
    • A comparative encyclopedia of DNA elements in the mouse genome
    • Yue, F., et al. A comparative encyclopedia of DNA elements in the mouse genome. Nature 515, 355-364 (2014
    • (2014) Nature , vol.515 , pp. 355-364
    • Yue, F.1
  • 32
    • 84904785973 scopus 로고    scopus 로고
    • Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis
    • Sabò, A., et al. Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis. Nature 511, 488-492 (2014
    • (2014) Nature , vol.511 , pp. 488-492
    • Sabò, A.1
  • 33
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S., et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1
  • 34
    • 0035229734 scopus 로고    scopus 로고
    • B cell development and immunoglobulin gene transcription in the absence of Oct-2 and OBF-1
    • Schubart, K., et al. B cell development and immunoglobulin gene transcription in the absence of Oct-2 and OBF-1. Nat. Immunol. 2, 69-74 (2001
    • (2001) Nat. Immunol , vol.2 , pp. 69-74
    • Schubart, K.1
  • 35
    • 84908249596 scopus 로고    scopus 로고
    • The AP-1 transcription factor Fra1 inhibits follicular B cell differentiation into plasma cells
    • Grötsch, B., et al. The AP-1 transcription factor Fra1 inhibits follicular B cell differentiation into plasma cells. J. Exp. Med. 211, 2199-2212 (2014
    • (2014) J. Exp. Med , vol.211 , pp. 2199-2212
    • Grötsch, B.1
  • 36
    • 33744989924 scopus 로고    scopus 로고
    • Canonical NF-kappaB activity, dispensable for B cell development, replaces BAFF-receptor signals and promotes B cell proliferation upon activation
    • Sasaki, Y., et al. Canonical NF-kappaB activity, dispensable for B cell development, replaces BAFF-receptor signals and promotes B cell proliferation upon activation. Immunity 24, 729-739 (2006
    • (2006) Immunity , vol.24 , pp. 729-739
    • Sasaki, Y.1
  • 37
    • 84865433317 scopus 로고    scopus 로고
    • ZBTB32 is an early repressor of the CIITA and MHC class II gene expression during B cell differentiation to plasma cells
    • Yoon, H.S., et al. ZBTB32 is an early repressor of the CIITA and MHC class II gene expression during B cell differentiation to plasma cells. J. Immunol. 189, 2393-2403 (2012
    • (2012) J. Immunol , vol.189 , pp. 2393-2403
    • Yoon, H.S.1
  • 38
    • 0025852445 scopus 로고
    • A B cell-deficient mouse by targeted disruption of the membrane exon of the immunoglobulin? Chain gene
    • Kitamura, D., Roes, J., K?hn, R., & Rajewsky, K. A B cell-deficient mouse by targeted disruption of the membrane exon of the immunoglobulin ? chain gene. Nature 350, 423-426 (1991
    • (1991) Nature , vol.350 , pp. 423-426
    • Kitamura, D.1    Roes, J.2    Kühn, R.3    Rajewsky, K.4
  • 39
    • 84880081465 scopus 로고    scopus 로고
    • P32 protein levels are integral to mitochondrial and endoplasmic reticulum morphology cell metabolism and survival
    • Hu, M., et al. p32 protein levels are integral to mitochondrial and endoplasmic reticulum morphology, cell metabolism and survival. Biochem. J. 453, 381-391 (2013
    • (2013) Biochem. J. , vol.453 , pp. 381-391
    • Hu, M.1
  • 41
    • 0032033127 scopus 로고    scopus 로고
    • Humoral immunity due to long-lived plasma cells
    • Slifka, M.K., Antia, R., Whitmire, J.K., & Ahmed, R. Humoral immunity due to long-lived plasma cells. Immunity 8, 363-372 (1998
    • (1998) Immunity , vol.8 , pp. 363-372
    • Slifka, M.K.1    Antia, R.2    Whitmire, J.K.3    Ahmed, R.4
  • 42
    • 1842405362 scopus 로고    scopus 로고
    • Lifetime of plasma cells in the bone marrow
    • Manz, R.A., Thiel, A., & Radbruch, A. Lifetime of plasma cells in the bone marrow. Nature 388, 133-134 (1997
    • (1997) Nature , vol.388 , pp. 133-134
    • Manz, R.A.1    Thiel, A.2    Radbruch, A.3
  • 43
    • 39549120410 scopus 로고    scopus 로고
    • Oct2 enhances antibody-secreting cell differentiation through regulation of IL-5 receptor α chain expression on activated B cells
    • Emslie, D., et al. Oct2 enhances antibody-secreting cell differentiation through regulation of IL-5 receptor α chain expression on activated B cells. J. Exp. Med. 205, 409-421 (2008
    • (2008) J. Exp. Med , vol.205 , pp. 409-421
    • Emslie, D.1
  • 44
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
    • Tahiliani, M., et al Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324, 930-935 (2009
    • (2009) Science , vol.324 , pp. 930-935
    • Tahiliani, M.1
  • 45
    • 79959937861 scopus 로고    scopus 로고
    • Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair
    • Cortellino, S., et al. Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell 146, 67-79 (2011
    • (2011) Cell , vol.146 , pp. 67-79
    • Cortellino, S.1
  • 46
    • 84355163093 scopus 로고    scopus 로고
    • DNA-binding factors shape the mouse methylome at distal regulatory regions
    • Stadler, M.B., et al. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480, 490-495 (2011
    • (2011) Nature , vol.480 , pp. 490-495
    • Stadler, M.B.1
  • 47
    • 33947730608 scopus 로고    scopus 로고
    • Asymmetric T lymphocyte division in the initiation of adaptive immune responses
    • Chang, J.T., et al. Asymmetric T lymphocyte division in the initiation of adaptive immune responses. Science 315, 1687-1691 (2007
    • (2007) Science , vol.315 , pp. 1687-1691
    • Chang, J.T.1
  • 48
    • 65949097067 scopus 로고    scopus 로고
    • FlowCore: A Bioconductor package for high throughput flow cytometry
    • Hahne, F., et al. flowCore: a Bioconductor package for high throughput flow cytometry. BMC Bioinformatics 10, 106 (2009
    • (2009) BMC Bioinformatics , vol.10 , pp. 106
    • Hahne, F.1
  • 49
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M., & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 50
    • 33646133653 scopus 로고    scopus 로고
    • The ucsc known genes
    • Hsu, F., et al. The UCSC Known Genes. Bioinformatics 22, 1036-1046 (2006
    • (2006) Bioinformatics , vol.22 , pp. 1036-1046
    • Hsu, F.1
  • 51
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman, R.C., et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80 (2004
    • (2004) Genome Biol , vol.5 , pp. R80
    • Gentleman, R.C.1
  • 52
    • 84988471199 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300 (1995
    • (1995) J. R. Stat. Soc , vol.B57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 53
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D., et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013
    • (2013) Genome Biol , vol.14 , pp. R36
    • Kim, D.1
  • 54
    • 84883368195 scopus 로고    scopus 로고
    • Software for computing and annotating genomic ranges
    • Lawrence, M., et al. Software for computing and annotating genomic ranges. PLoS Comput. Biol. 9, e1003118 (2013
    • (2013) PLoS Comput. Biol , vol.9 , pp. e1003118
    • Lawrence, M.1
  • 55
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D., McCarthy, D.J., & Smyth, G.K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26 139-140 (2009
    • (2009) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 56
    • 33846689706 scopus 로고    scopus 로고
    • Using GOstats to test gene lists for GO term association
    • Falcon, S., & Gentleman, R. Using GOstats to test gene lists for GO term association. Bioinformatics 23, 257-258 (2007
    • (2007) Bioinformatics , vol.23 , pp. 257-258
    • Falcon, S.1    Gentleman, R.2
  • 57
    • 84880018266 scopus 로고    scopus 로고
    • Multiplexed Illumina sequencing libraries from picogram quantities of DNA
    • Bowman, S.K., et al. Multiplexed Illumina sequencing libraries from picogram quantities of DNA. BMC Genomics 14, 466 (2013
    • (2013) BMC Genomics , vol.14 , pp. 466
    • Bowman, S.K.1
  • 58
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
    • Krueger, F., & Andrews, S.R. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27, 1571-1572 (2011
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 59
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B., & Salzberg, S.L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 60
    • 84969921042 scopus 로고    scopus 로고
    • Differential methylation analysis for BS-seq data under general experimental design
    • Park, Y., & Wu, H. Differential methylation analysis for BS-seq data under general experimental design. Bioinformatics 32, 1446-1453 (2016
    • (2016) Bioinformatics , vol.32 , pp. 1446-1453
    • Park, Y.1    Wu, H.2
  • 61
    • 0002386913 scopus 로고
    • On the interpretation of x(2) from contingency tables, and the calculation of P
    • Fisher, R.A. On the interpretation of x(2) from contingency tables, and the calculation of P. J.R. Stat. Soc. 85, 87-94 (1922
    • (1922) J.R. Stat. Soc , vol.85 , pp. 87-94
    • Fisher, R.A.1
  • 62
    • 84970044605 scopus 로고    scopus 로고
    • TFBSTools: An R/bioconductor package for transcription factor binding site analysis
    • Tan, G., & Lenhard, B. TFBSTools: an R/bioconductor package for transcription factor binding site analysis. Bioinformatics 32, 1555-1556 (2016
    • (2016) Bioinformatics , vol.32 , pp. 1555-1556
    • Tan, G.1    Lenhard, B.2
  • 63
    • 84883796667 scopus 로고    scopus 로고
    • The aurora B kinase and the polycomb protein ring1B combine to regulate active promoters in quiescent lymphocytes
    • Frangini, A., et al. The aurora B kinase and the polycomb protein ring1B combine to regulate active promoters in quiescent lymphocytes. Mol. Cell 51, 647-661 (2013
    • (2013) Mol. Cell , vol.51 , pp. 647-661
    • Frangini, A.1
  • 64
    • 84864147148 scopus 로고    scopus 로고
    • The B-cell identity factor Pax5 regulates distinct transcriptional programmes in early and late B lymphopoiesis
    • Revilla-I-Domingo, R., et al. The B-cell identity factor Pax5 regulates distinct transcriptional programmes in early and late B lymphopoiesis. EMBO J. 31, 3130-3146 (2012
    • (2012) EMBO J. , vol.31 , pp. 3130-3146
    • Revilla-I-Domingo, R.1
  • 65
    • 52649132425 scopus 로고    scopus 로고
    • Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data
    • Jothi, R., Cuddapah, S., Barski, A., Cui, K., & Zhao, K. Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. Nucleic Acids Res. 36, 5221-5231 (2008
    • (2008) Nucleic Acids Res , vol.36 , pp. 5221-5231
    • Jothi, R.1    Cuddapah, S.2    Barski, A.3    Cui, K.4    Zhao, K.5
  • 66
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of chip-seq (macs
    • Zhang, Y., et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008
    • (2008) Genome Biol , vol.9 , pp. R137
    • Zhang, Y.1


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