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Volumn 43, Issue , 2016, Pages 213-221

Sixteen years of evolution of human respiratory syncytial virus subgroup A in Buenos Aires, Argentina: GA2 the prevalent genotype through the years

Author keywords

Circulation patterns; Genotypes; HRSV; ON1 genetic lineage; Phylogeography

Indexed keywords

GLYCOPROTEIN; G GLYCOPROTEIN, RESPIRATORY SYNCYTIAL VIRUS; RESPIRATORY SYNCYTIAL VIRUS VACCINE; VIRUS FUSION PROTEIN;

EID: 84979735721     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2016.04.034     Document Type: Article
Times cited : (15)

References (40)
  • 1
    • 84901020212 scopus 로고    scopus 로고
    • Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya
    • Agoti, C.N., Otieno, J.R., Gitahi, C.W., Cane, P.A., Nokes, D.J., Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya. Emerg. Infect. Dis. 20 (2014), 950–959, 10.3201/eid2006.131438.
    • (2014) Emerg. Infect. Dis. , vol.20 , pp. 950-959
    • Agoti, C.N.1    Otieno, J.R.2    Gitahi, C.W.3    Cane, P.A.4    Nokes, D.J.5
  • 2
    • 84924767320 scopus 로고    scopus 로고
    • Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing
    • Agoti, C.N., Otieno, J.R., Munywoki, P.K., Mwihuri, A.G., Cane, P.A., Nokes, D.J., Kellam, P., Cotten, M., Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing. J. Virol. 89 (2015), 3444–3454, 10.1128/JVI.03391-14.
    • (2015) J. Virol. , vol.89 , pp. 3444-3454
    • Agoti, C.N.1    Otieno, J.R.2    Munywoki, P.K.3    Mwihuri, A.G.4    Cane, P.A.5    Nokes, D.J.6    Kellam, P.7    Cotten, M.8
  • 3
    • 84922438562 scopus 로고    scopus 로고
    • Infection with novel respiratory syncytial virus genotype Ontario (ON1) in adult hematopoietic cell transplant recipients, Texas, 2011–2013
    • Avadhanula, V., Chemaly, R.F., Shah, D.P., Ghantoji, S.S., Azzi, J.M., Aideyan, L.O., Mei, M., Piedra, P.A., Infection with novel respiratory syncytial virus genotype Ontario (ON1) in adult hematopoietic cell transplant recipients, Texas, 2011–2013. J. Infect. Dis. 211 (2015), 582–589, 10.1093/infdis/jiu473.
    • (2015) J. Infect. Dis. , vol.211 , pp. 582-589
    • Avadhanula, V.1    Chemaly, R.F.2    Shah, D.P.3    Ghantoji, S.S.4    Azzi, J.M.5    Aideyan, L.O.6    Mei, M.7    Piedra, P.A.8
  • 4
    • 80053959139 scopus 로고    scopus 로고
    • SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics
    • Bielejec, F., Rambaut, A., Suchard, M.A., Lemey, P., SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinforma. Oxf. Engl. 27 (2011), 2910–2912, 10.1093/bioinformatics/btr481.
    • (2011) Bioinforma. Oxf. Engl. , vol.27 , pp. 2910-2912
    • Bielejec, F.1    Rambaut, A.2    Suchard, M.A.3    Lemey, P.4
  • 5
    • 15244357684 scopus 로고    scopus 로고
    • Genotypes of respiratory syncytial virus group B identified in Uruguay
    • Blanc, A., Delfraro, A., Frabasile, S., Arbiza, J., Genotypes of respiratory syncytial virus group B identified in Uruguay. Arch. Virol. 150 (2005), 603–609, 10.1007/s00705-004-0412-x.
    • (2005) Arch. Virol. , vol.150 , pp. 603-609
    • Blanc, A.1    Delfraro, A.2    Frabasile, S.3    Arbiza, J.4
  • 7
    • 0013887462 scopus 로고
    • An antigenic analysis of respiratory syncytial virus isolates by a plaque reduction neutralization test
    • Coates, H.V., Alling, D.W., Chanock, R.M., An antigenic analysis of respiratory syncytial virus isolates by a plaque reduction neutralization test. Am. J. Epidemiol. 83 (1966), 299–313.
    • (1966) Am. J. Epidemiol. , vol.83 , pp. 299-313
    • Coates, H.V.1    Alling, D.W.2    Chanock, R.M.3
  • 8
    • 84974648219 scopus 로고    scopus 로고
    • Respiratory syncytial virus and metapneumovirus
    • D. Knipe P. Howley LWW Philadelphia, USA
    • Collins, P.L., Karron, R., Respiratory syncytial virus and metapneumovirus. Knipe, D., Howley, P., (eds.) Fields Virology, 2013, LWW, Philadelphia, USA, 1086–1123.
    • (2013) Fields Virology , pp. 1086-1123
    • Collins, P.L.1    Karron, R.2
  • 9
    • 84884267366 scopus 로고    scopus 로고
    • Genetic variation in attachment glycoprotein genes of human respiratory syncytial virus subgroups A and B in children in recent five consecutive years
    • Cui, G., Zhu, R., Qian, Y., Deng, J., Zhao, L., Sun, Y., Wang, F., Genetic variation in attachment glycoprotein genes of human respiratory syncytial virus subgroups A and B in children in recent five consecutive years. PLoS One, 8, 2013, e75020, 10.1371/journal.pone.0075020.
    • (2013) PLoS One , vol.8 , pp. e75020
    • Cui, G.1    Zhu, R.2    Qian, Y.3    Deng, J.4    Zhao, L.5    Sun, Y.6    Wang, F.7
  • 11
    • 84864453108 scopus 로고    scopus 로고
    • jModelTest 2: more models, new heuristics and parallel computing
    • Darriba, D., Taboada, G.L., Doallo, R., Posada, D., jModelTest 2: more models, new heuristics and parallel computing. Nat. Methods, 9, 2012, 772, 10.1038/nmeth.2109.
    • (2012) Nat. Methods , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 12
    • 84864530626 scopus 로고    scopus 로고
    • Bayesian phylogenetics with BEAUti and the BEAST 1.7
    • Drummond, A.J., Suchard, M.A., Xie, D., Rambaut, A., Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29 (2012), 1969–1973, 10.1093/molbev/mss075.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1969-1973
    • Drummond, A.J.1    Suchard, M.A.2    Xie, D.3    Rambaut, A.4
  • 13
    • 84942845387 scopus 로고    scopus 로고
    • Genetic diversity and evolutionary insights of respiratory syncytial virus A ON1 genotype: global and local transmission dynamics
    • Duvvuri, V.R., Granados, A., Rosenfeld, P., Bahl, J., Eshaghi, A., Gubbay, J.B., Genetic diversity and evolutionary insights of respiratory syncytial virus A ON1 genotype: global and local transmission dynamics. Sci. Rep., 5, 2015, 10.1038/srep14268.
    • (2015) Sci. Rep. , vol.5
    • Duvvuri, V.R.1    Granados, A.2    Rosenfeld, P.3    Bahl, J.4    Eshaghi, A.5    Gubbay, J.B.6
  • 14
    • 84859024155 scopus 로고    scopus 로고
    • Genetic variability of human respiratory syncytial virus a strains circulating in Ontario: a novel genotype with a 72 nucleotide G gene duplication
    • Eshaghi, A., Duvvuri, V.R., Lai, R., Nadarajah, J.T., Li, A., Patel, S.N., Low, D.E., Gubbay, J.B., Genetic variability of human respiratory syncytial virus a strains circulating in Ontario: a novel genotype with a 72 nucleotide G gene duplication. PLoS One, 7, 2012, 10.1371/journal.pone.0032807.
    • (2012) PLoS One , vol.7
    • Eshaghi, A.1    Duvvuri, V.R.2    Lai, R.3    Nadarajah, J.T.4    Li, A.5    Patel, S.N.6    Low, D.E.7    Gubbay, J.B.8
  • 15
    • 0014419908 scopus 로고
    • Viral diagnosis by immunofluorescence
    • Gardner, P.S., McQuilin, J., Viral diagnosis by immunofluorescence. Lancet 1 (1968), 597–598.
    • (1968) Lancet , vol.1 , pp. 597-598
    • Gardner, P.S.1    McQuilin, J.2
  • 16
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., Gascuel, O., New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59 (2010), 307–321, 10.1093/sysbio/syq010.
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 17
    • 53849133821 scopus 로고    scopus 로고
    • Evolutionary history and phylogeography of human viruses
    • Holmes, E.C., Evolutionary history and phylogeography of human viruses. Annu. Rev. Microbiol. 62 (2008), 307–328, 10.1146/annurev.micro.62.081307.162912.
    • (2008) Annu. Rev. Microbiol. , vol.62 , pp. 307-328
    • Holmes, E.C.1
  • 18
    • 84938099465 scopus 로고    scopus 로고
    • Functional analysis of the 60-nucleotide duplication in the respiratory syncytial virus Buenos Aires strain attachment glycoprotein
    • Hotard, A.L., Laikhter, E., Brooks, K., Hartert, T.V., Moore, M.L., Functional analysis of the 60-nucleotide duplication in the respiratory syncytial virus Buenos Aires strain attachment glycoprotein. J. Virol. 89 (2015), 8258–8266, 10.1128/JVI.01045-15.
    • (2015) J. Virol. , vol.89 , pp. 8258-8266
    • Hotard, A.L.1    Laikhter, E.2    Brooks, K.3    Hartert, T.V.4    Moore, M.L.5
  • 19
    • 84892767243 scopus 로고    scopus 로고
    • Live-attenuated respiratory syncytial virus vaccines
    • Karron, R.A., Buchholz, U.J., Collins, P.L., Live-attenuated respiratory syncytial virus vaccines. Curr. Top. Microbiol. Immunol. 372 (2013), 259–284, 10.1007/978-3-642-38919-1_13.
    • (2013) Curr. Top. Microbiol. Immunol. , vol.372 , pp. 259-284
    • Karron, R.A.1    Buchholz, U.J.2    Collins, P.L.3
  • 20
    • 84947247579 scopus 로고    scopus 로고
    • A gene deletion that up-regulates viral gene expression yields an attenuated RSV vaccine with improved antibody responses in children
    • Karron, R.A., Luongo, C., Thumar, B., Loehr, K.M., Englund, J.A., Collins, P.L., Buchholz, U.J., A gene deletion that up-regulates viral gene expression yields an attenuated RSV vaccine with improved antibody responses in children. Sci. Transl. Med., 7, 2015, 312ra175, 10.1126/scitranslmed.aac8463.
    • (2015) Sci. Transl. Med. , vol.7 , pp. 312ra175
    • Karron, R.A.1    Luongo, C.2    Thumar, B.3    Loehr, K.M.4    Englund, J.A.5    Collins, P.L.6    Buchholz, U.J.7
  • 21
    • 84867567503 scopus 로고    scopus 로고
    • Phylodynamics and dispersal of HRSV entails its permanence in the general population in between yearly outbreaks in children
    • Katzov-Eckert, H., Botosso, V.F., Neto, E.A., Zanotto, P.M. de A., VGND Consortium, Phylodynamics and dispersal of HRSV entails its permanence in the general population in between yearly outbreaks in children. PLoS One, 7, 2012, e41953, 10.1371/journal.pone.0041953.
    • (2012) PLoS One , vol.7 , pp. e41953
    • Katzov-Eckert, H.1    Botosso, V.F.2    Neto, E.A.3    Zanotto, P.M.D.A.4    VGND Consortium5
  • 24
    • 0031670085 scopus 로고    scopus 로고
    • Circulation patterns of genetically distinct group A and B strains of human respiratory syncytial virus in a community
    • Peret, T.C., Hall, C.B., Schnabel, K.C., Golub, J.A., Anderson, L.J., Circulation patterns of genetically distinct group A and B strains of human respiratory syncytial virus in a community. J. Gen. Virol. 79:Pt 9 (1998), 2221–2229, 10.1099/0022-1317-79-9-2221.
    • (1998) J. Gen. Virol. , vol.79 , pp. 2221-2229
    • Peret, T.C.1    Hall, C.B.2    Schnabel, K.C.3    Golub, J.A.4    Anderson, L.J.5
  • 25
    • 0034049002 scopus 로고    scopus 로고
    • Circulation patterns of group A and B human respiratory syncytial virus genotypes in 5 communities in North America
    • Peret, T.C., Hall, C.B., Hammond, G.W., Piedra, P.A., Storch, G.A., Sullender, W.M., Tsou, C., Anderson, L.J., Circulation patterns of group A and B human respiratory syncytial virus genotypes in 5 communities in North America. J. Infect. Dis. 181 (2000), 1891–1896, 10.1086/315508.
    • (2000) J. Infect. Dis. , vol.181 , pp. 1891-1896
    • Peret, T.C.1    Hall, C.B.2    Hammond, G.W.3    Piedra, P.A.4    Storch, G.A.5    Sullender, W.M.6    Tsou, C.7    Anderson, L.J.8
  • 26
    • 84893491956 scopus 로고    scopus 로고
    • Replacement and positive evolution of subtype A and B respiratory syncytial virus G-protein genotypes from 1997–2012 in South Africa
    • Pretorius, M.A., van Niekerk, S., Tempia, S., Moyes, J., Cohen, C., Madhi, S.A., Venter, M., Surveillance Group, S.A.R.I., Replacement and positive evolution of subtype A and B respiratory syncytial virus G-protein genotypes from 1997–2012 in South Africa. J. Infect. Dis. 208:Suppl. 3 (2013), S227–S237, 10.1093/infdis/jit477.
    • (2013) J. Infect. Dis. , vol.208 , pp. S227-S237
    • Pretorius, M.A.1    van Niekerk, S.2    Tempia, S.3    Moyes, J.4    Cohen, C.5    Madhi, S.A.6    Venter, M.7    Surveillance Group, S.A.R.I.8
  • 27
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F., Huelsenbeck, J.P., MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinforma. Oxf. Engl. 19 (2003), 1572–1574.
    • (2003) Bioinforma. Oxf. Engl. , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 29
    • 0031684905 scopus 로고    scopus 로고
    • Multiplex PCR for typing and subtyping influenza and respiratory syncytial viruses
    • Stockton, J., Ellis, J.S., Saville, M., Clewley, J.P., Zambon, M.C., Multiplex PCR for typing and subtyping influenza and respiratory syncytial viruses. J. Clin. Microbiol. 36 (1998), 2990–2995.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 2990-2995
    • Stockton, J.1    Ellis, J.S.2    Saville, M.3    Clewley, J.P.4    Zambon, M.C.5
  • 30
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular Evolutionary Genetics Analysis version 6.0
    • Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S., MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 30 (2013), 2725–2729, 10.1093/molbev/mst197.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 31
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., Gibson, T.J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994), 4673–4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 32
    • 0242383304 scopus 로고    scopus 로고
    • Major changes in the G protein of human respiratory syncytial virus isolates introduced by a duplication of 60 nucleotides
    • Trento, A., Galiano, M., Videla, C., Carballal, G., García-Barreno, B., Melero, J.A., Palomo, C., Major changes in the G protein of human respiratory syncytial virus isolates introduced by a duplication of 60 nucleotides. J. Gen. Virol. 84 (2003), 3115–3120, 10.1099/vir.0.19357-0.
    • (2003) J. Gen. Virol. , vol.84 , pp. 3115-3120
    • Trento, A.1    Galiano, M.2    Videla, C.3    Carballal, G.4    García-Barreno, B.5    Melero, J.A.6    Palomo, C.7
  • 33
    • 30344436375 scopus 로고    scopus 로고
    • Natural history of human respiratory syncytial virus inferred from phylogenetic analysis of the attachment (G) glycoprotein with a 60-nucleotide duplication
    • Trento, A., Viegas, M., Galiano, M., Videla, C., Carballal, G., Mistchenko, A.S., Melero, J.A., Natural history of human respiratory syncytial virus inferred from phylogenetic analysis of the attachment (G) glycoprotein with a 60-nucleotide duplication. J. Virol. 80 (2006), 975–984, 10.1128/JVI.80.2.975-984.2006.
    • (2006) J. Virol. , vol.80 , pp. 975-984
    • Trento, A.1    Viegas, M.2    Galiano, M.3    Videla, C.4    Carballal, G.5    Mistchenko, A.S.6    Melero, J.A.7
  • 34
    • 77954530543 scopus 로고    scopus 로고
    • Ten years of global evolution of the human respiratory syncytial virus BA genotype with a 60-nucleotide duplication in the G protein gene
    • Trento, A., Casas, I., Calderón, A., Garcia-Garcia, M.L., Calvo, C., Perez-Breña, P., Melero, J.A., Ten years of global evolution of the human respiratory syncytial virus BA genotype with a 60-nucleotide duplication in the G protein gene. J. Virol. 84 (2010), 7500–7512, 10.1128/JVI.00345-10.
    • (2010) J. Virol. , vol.84 , pp. 7500-7512
    • Trento, A.1    Casas, I.2    Calderón, A.3    Garcia-Garcia, M.L.4    Calvo, C.5    Perez-Breña, P.6    Melero, J.A.7
  • 35
    • 84937691842 scopus 로고    scopus 로고
    • Conservation of G-protein epitopes in respiratory syncytial virus (group A) despite broad genetic diversity: is antibody selection involved in virus evolution?
    • Trento, A., Ábrego, L., Rodriguez-Fernandez, R., González-Sánchez, M.I., González-Martínez, F., Delfraro, A., Pascale, J.M., Arbiza, J., Melero, J.A., Conservation of G-protein epitopes in respiratory syncytial virus (group A) despite broad genetic diversity: is antibody selection involved in virus evolution?. J. Virol. 89 (2015), 7776–7785, 10.1128/JVI.00467-15.
    • (2015) J. Virol. , vol.89 , pp. 7776-7785
    • Trento, A.1    Ábrego, L.2    Rodriguez-Fernandez, R.3    González-Sánchez, M.I.4    González-Martínez, F.5    Delfraro, A.6    Pascale, J.M.7    Arbiza, J.8    Melero, J.A.9
  • 36
    • 0034852582 scopus 로고    scopus 로고
    • Genetic diversity and molecular epidemiology of respiratory syncytial virus over four consecutive seasons in South Africa: identification of new subgroup A and B genotypes
    • Venter, M., Madhi, S.A., Tiemessen, C.T., Schoub, B.D., Genetic diversity and molecular epidemiology of respiratory syncytial virus over four consecutive seasons in South Africa: identification of new subgroup A and B genotypes. J. Gen. Virol. 82 (2001), 2117–2124.
    • (2001) J. Gen. Virol. , vol.82 , pp. 2117-2124
    • Venter, M.1    Madhi, S.A.2    Tiemessen, C.T.3    Schoub, B.D.4
  • 37
    • 0031804525 scopus 로고    scopus 로고
    • Acute lower respiratory infections due to respiratory syncytial virus and adenovirus among hospitalized children from Argentina
    • Videla, C., Carballal, G., Misirlian, A., Aguilar, M., Acute lower respiratory infections due to respiratory syncytial virus and adenovirus among hospitalized children from Argentina. Clin. Diagn. Virol. 10 (1998), 17–23.
    • (1998) Clin. Diagn. Virol. , vol.10 , pp. 17-23
    • Videla, C.1    Carballal, G.2    Misirlian, A.3    Aguilar, M.4
  • 38
    • 24644517949 scopus 로고    scopus 로고
    • Molecular epidemiology of human respiratory syncytial virus subgroup A over a six-year period (1999–2004) in Argentina
    • Viegas, M., Mistchenko, A.S., Molecular epidemiology of human respiratory syncytial virus subgroup A over a six-year period (1999–2004) in Argentina. J. Med. Virol. 77 (2005), 302–310, 10.1002/jmv.20457.
    • (2005) J. Med. Virol. , vol.77 , pp. 302-310
    • Viegas, M.1    Mistchenko, A.S.2
  • 39
    • 4444275695 scopus 로고    scopus 로고
    • Respiratory viruses seasonality in children under five years of age in Buenos Aires, Argentina: a five-year analysis
    • Viegas, M., Barrero, P.R., Maffey, A.F., Mistchenko, A.S., Respiratory viruses seasonality in children under five years of age in Buenos Aires, Argentina: a five-year analysis. J. Infect. 49 (2004), 222–228, 10.1016/j.jinf.2003.10.006.
    • (2004) J. Infect. , vol.49 , pp. 222-228
    • Viegas, M.1    Barrero, P.R.2    Maffey, A.F.3    Mistchenko, A.S.4


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