Genome sequence of the pathogenic bacterium Vibrio vulnificus biotype 3

Genome Announcements

Volumn 1, Issue 2, 2013, Pages

  Danin Poleg, Yael ^a   Elgavish, Sharona ^a   Raz, Nili ^a   Efimov, Vera ^a   Kashi, Yechezkel ^a  

^a TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84979707160     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00136-13     Document Type: Article

References (16)

1. Jones MK, Oliver JD. 2009. Vibrio vulnificus: disease and pathogenesis. Infect. Immun. 77:1723-1733.
2. Oliver JD. 2006. Vibrio vulnificus, p 349-366. In Thompson FL, Austin B, Swings J (ed), The biology of vibrios. ASM Press, Washington, DC.
3. Oliver JD, Warner RA, Cleland DR. 1982. Distribution and ecology of Vibrio vulnificus and other lactose-fermenting marine vibrios in coastal waters of the southeastern United States. Appl. Environ. Microbiol. 44: 1404-1414.
4. Strom MS, Paranjpye RN. 2000. Epidemiology and pathogenesis of Vibrio vulnificus. Microbes Infect. 2:177-188.
5. Bisharat N, Agmon V, Finkelstein R, Raz R, Ben-Dror G, Lerner L, Soboh S, Colodner R, Cameron DN, Wykstra DL, Swerdlow DL, Farmer JJ, and the Israel Vibrio Study Group. 1999. Clinical, epidemiological, and microbiological features of Vibrio vulnificus biogroup 3 causing outbreaks ofwound infection and bacteraemia in Israel. Lancet 354:1421-1424.
6. Bisharat N, Amaro C, Fouz B, Llorens A, Cohen DI. 2007. Serological and molecular characteristics of Vibrio vulnificus biotype 3: evidence for high clonality. Microbiology 153:847-856.
7. Broza YY, Danin-Poleg Y, Lerner L, Broza M, Kashi Y. 2007. Vibrio vulnificus typing based on simple sequence repeats: insights into the biotype 3 group. J. Clin. Microbiol. 45:2951-2959.
8. Broza YY, Raz N, Lerner L, Danin-Poleg Y, Kashi Y. 2012. Genetic diversity of the human pathogen Vibrio vulnificus: a new phylogroup. Int. J. Food Microbiol. 153:436-443.
9. Broza YY, Danin-Poleg Y, Lerner L, Valinsky L, Broza M, Kashi Y. 2009. Epidemiologic study of Vibrio vulnificus infections by using variable number tandem repeats. Emerg. Infect. Dis. 15:1282-1285.
10. Kim HU, Kim SY, Jeong H, Kim TY, Kim JJ, Choy HE, Yi KY, Rhee JH, Lee SY. 2011. Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery. Mol. Syst. Biol. 7:460.
11. Quirke AM, Reen FJ, Claesson MJ, Boyd EF. 2006. Genomic island identification in Vibrio vulnificus reveals significant genome plasticity in this human pathogen. Bioinformatics 22:905-910.
12. Urbanczyk H, Ast JC, Kaeding AJ, Oliver JD, Dunlap PV. 2008. Phylogenetic analysis of the incidence of lux gene horizontal transfer in Vibrionaceae. J. Bacteriol. 190:3494-3504.
13. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
14. Assefa S, Keane TM, Otto TD, Newbold C, Berriman M. 2009. ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics 25:1968-1969.
15. Chen CY, Wu KM, Chang YC, Chang CH, Tsai HC, Liao TL, Liu YM, Chen HJ, Shen AB, Li JC, Su TL, Shao CP, Lee CT, Hor LI, Tsai SF. 2003. Comparative genome analysis of Vibrio vulnificus, a marine pathogen. Genome Res. 13:2577-2587.
16. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, Mcneil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.